Strain Fitness in Escherichia coli BW25113 around b2925

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmscS and fbaA are separated by 357 nucleotidesfbaA and pgk are separated by 214 nucleotides b2924: mscS - mechanosensitive channel (NCBI), at 3,066,969 to 3,067,829 mscS b2925: fbaA - fructose-bisphosphate aldolase (NCBI), at 3,068,187 to 3,069,266 fbaA b2926: pgk - phosphoglycerate kinase (NCBI), at 3,069,481 to 3,070,644 pgk Position (kb) 3068 3069 3070Strain fitness (log2 ratio) -1 0 1at 3067.218 kb on + strand, within mscSat 3067.218 kb on + strand, within mscSat 3067.220 kb on - strand, within mscSat 3067.223 kb on + strand, within mscSat 3067.223 kb on + strand, within mscSat 3067.223 kb on + strand, within mscSat 3067.223 kb on + strand, within mscSat 3067.225 kb on - strand, within mscSat 3067.225 kb on - strand, within mscSat 3067.245 kb on - strand, within mscSat 3067.253 kb on - strand, within mscSat 3067.253 kb on - strand, within mscSat 3067.253 kb on - strand, within mscSat 3067.253 kb on - strand, within mscSat 3067.352 kb on + strand, within mscSat 3067.363 kb on - strand, within mscSat 3067.373 kb on - strand, within mscSat 3067.389 kb on + strand, within mscSat 3067.397 kb on - strand, within mscSat 3067.397 kb on - strand, within mscSat 3067.399 kb on + strand, within mscSat 3067.399 kb on + strand, within mscSat 3067.399 kb on + strand, within mscSat 3067.399 kb on + strand, within mscSat 3067.407 kb on - strand, within mscSat 3067.416 kb on - strand, within mscSat 3067.511 kb on + strand, within mscSat 3067.519 kb on - strand, within mscSat 3067.519 kb on - strand, within mscSat 3067.530 kb on + strand, within mscSat 3067.552 kb on + strand, within mscSat 3067.670 kb on - strand, within mscSat 3067.745 kb on + strandat 3067.745 kb on + strandat 3067.753 kb on + strandat 3067.788 kb on - strandat 3067.862 kb on + strandat 3067.908 kb on - strandat 3067.908 kb on - strandat 3069.297 kb on - strandat 3069.440 kb on - strandat 3069.440 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
3,067,218 + mscS b2924 0.29 -0.2
3,067,218 + mscS b2924 0.29 +1.3
3,067,220 - mscS b2924 0.29 +0.2
3,067,223 + mscS b2924 0.30 +0.6
3,067,223 + mscS b2924 0.30 +0.0
3,067,223 + mscS b2924 0.30 -0.2
3,067,223 + mscS b2924 0.30 +1.4
3,067,225 - mscS b2924 0.30 +0.9
3,067,225 - mscS b2924 0.30 +0.3
3,067,245 - mscS b2924 0.32 -0.1
3,067,253 - mscS b2924 0.33 -1.3
3,067,253 - mscS b2924 0.33 +0.1
3,067,253 - mscS b2924 0.33 +1.3
3,067,253 - mscS b2924 0.33 -0.4
3,067,352 + mscS b2924 0.44 -0.1
3,067,363 - mscS b2924 0.46 -0.1
3,067,373 - mscS b2924 0.47 +1.5
3,067,389 + mscS b2924 0.49 +0.3
3,067,397 - mscS b2924 0.50 -0.7
3,067,397 - mscS b2924 0.50 +0.0
3,067,399 + mscS b2924 0.50 -0.1
3,067,399 + mscS b2924 0.50 +0.6
3,067,399 + mscS b2924 0.50 +0.2
3,067,399 + mscS b2924 0.50 +0.5
3,067,407 - mscS b2924 0.51 -0.1
3,067,416 - mscS b2924 0.52 +0.4
3,067,511 + mscS b2924 0.63 +0.1
3,067,519 - mscS b2924 0.64 +0.1
3,067,519 - mscS b2924 0.64 +1.2
3,067,530 + mscS b2924 0.65 -0.1
3,067,552 + mscS b2924 0.68 -0.1
3,067,670 - mscS b2924 0.81 -0.5
3,067,745 + -0.3
3,067,745 + +1.4
3,067,753 + -0.4
3,067,788 - -0.1
3,067,862 + +0.6
3,067,908 - -0.1
3,067,908 - +0.4
3,069,297 - +0.9
3,069,440 - -0.9
3,069,440 - -0.1

Or see this region's nucleotide sequence