Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS05960 and RPSI07_RS05965 are separated by 41 nucleotides RPSI07_RS05965 and RPSI07_RS24540 are separated by 234 nucleotides RPSI07_RS24540 and RPSI07_RS24545 are separated by 58 nucleotides RPSI07_RS24545 and RPSI07_RS24550 are separated by 378 nucleotides
RPSI07_RS05960: RPSI07_RS05960 - membrane protein, at 1,621,175 to 1,622,209
_RS05960
RPSI07_RS05965: RPSI07_RS05965 - DUF350 domain-containing protein, at 1,622,251 to 1,622,649
_RS05965
RPSI07_RS24540: RPSI07_RS24540 - hypothetical protein, at 1,622,884 to 1,623,114
_RS24540
RPSI07_RS24545: RPSI07_RS24545 - hypothetical protein, at 1,623,173 to 1,623,532
_RS24545
RPSI07_RS24550: RPSI07_RS24550 - hypothetical protein, at 1,623,911 to 1,625,209
_RS24550
Position (kb) 1623
1624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1622.245 kb on - strand at 1622.245 kb on - strand at 1622.546 kb on + strand, within RPSI07_RS05965 at 1622.564 kb on + strand, within RPSI07_RS05965 at 1622.564 kb on + strand, within RPSI07_RS05965 at 1622.565 kb on - strand, within RPSI07_RS05965 at 1622.565 kb on - strand, within RPSI07_RS05965 at 1622.565 kb on - strand, within RPSI07_RS05965 at 1622.618 kb on + strand at 1622.618 kb on + strand at 1622.619 kb on - strand at 1622.619 kb on - strand at 1622.619 kb on - strand at 1622.619 kb on - strand at 1622.619 kb on - strand at 1622.619 kb on - strand at 1622.619 kb on - strand at 1622.687 kb on + strand at 1622.687 kb on + strand at 1622.687 kb on + strand at 1622.687 kb on + strand at 1622.687 kb on + strand at 1622.688 kb on - strand at 1622.689 kb on + strand at 1622.689 kb on + strand at 1622.690 kb on - strand at 1622.690 kb on - strand at 1622.712 kb on + strand at 1622.777 kb on + strand at 1622.777 kb on + strand at 1622.778 kb on - strand at 1622.778 kb on - strand at 1622.885 kb on + strand at 1622.893 kb on + strand at 1622.893 kb on + strand at 1622.893 kb on + strand at 1622.894 kb on - strand at 1622.894 kb on - strand at 1622.894 kb on - strand at 1622.894 kb on - strand at 1622.894 kb on - strand at 1622.894 kb on - strand at 1622.894 kb on - strand at 1622.894 kb on - strand at 1622.894 kb on - strand at 1622.894 kb on - strand at 1623.035 kb on - strand, within RPSI07_RS24540 at 1623.103 kb on + strand at 1623.103 kb on + strand at 1623.103 kb on + strand at 1623.103 kb on + strand at 1623.104 kb on - strand at 1623.104 kb on - strand at 1623.104 kb on - strand at 1623.105 kb on - strand at 1623.126 kb on + strand at 1623.126 kb on + strand at 1623.126 kb on + strand at 1623.220 kb on + strand, within RPSI07_RS24545 at 1623.220 kb on + strand, within RPSI07_RS24545 at 1623.220 kb on + strand, within RPSI07_RS24545 at 1623.221 kb on - strand, within RPSI07_RS24545 at 1623.224 kb on + strand, within RPSI07_RS24545 at 1623.224 kb on + strand, within RPSI07_RS24545 at 1623.225 kb on - strand, within RPSI07_RS24545 at 1623.245 kb on + strand, within RPSI07_RS24545 at 1623.245 kb on + strand, within RPSI07_RS24545 at 1623.362 kb on - strand, within RPSI07_RS24545 at 1623.466 kb on - strand, within RPSI07_RS24545 at 1623.514 kb on + strand at 1623.514 kb on + strand at 1623.530 kb on + strand at 1623.530 kb on + strand at 1623.603 kb on + strand at 1623.779 kb on + strand at 1623.793 kb on - strand at 1623.975 kb on + strand at 1623.991 kb on + strand at 1623.992 kb on - strand at 1623.996 kb on + strand at 1623.996 kb on + strand at 1623.996 kb on + strand at 1624.049 kb on + strand, within RPSI07_RS24550 at 1624.049 kb on + strand, within RPSI07_RS24550 at 1624.050 kb on - strand, within RPSI07_RS24550 at 1624.050 kb on - strand, within RPSI07_RS24550 at 1624.050 kb on - strand, within RPSI07_RS24550 at 1624.055 kb on - strand, within RPSI07_RS24550 at 1624.055 kb on - strand, within RPSI07_RS24550 at 1624.056 kb on - strand, within RPSI07_RS24550 at 1624.056 kb on - strand, within RPSI07_RS24550 at 1624.106 kb on + strand, within RPSI07_RS24550 at 1624.106 kb on + strand, within RPSI07_RS24550 at 1624.106 kb on + strand, within RPSI07_RS24550 at 1624.106 kb on + strand, within RPSI07_RS24550 at 1624.106 kb on + strand, within RPSI07_RS24550 at 1624.106 kb on + strand, within RPSI07_RS24550 at 1624.107 kb on - strand, within RPSI07_RS24550 at 1624.107 kb on - strand, within RPSI07_RS24550 at 1624.107 kb on - strand, within RPSI07_RS24550 at 1624.107 kb on - strand, within RPSI07_RS24550 at 1624.107 kb on - strand, within RPSI07_RS24550 at 1624.107 kb on - strand, within RPSI07_RS24550 at 1624.107 kb on - strand, within RPSI07_RS24550 at 1624.107 kb on - strand, within RPSI07_RS24550 at 1624.107 kb on - strand, within RPSI07_RS24550 at 1624.114 kb on + strand, within RPSI07_RS24550 at 1624.175 kb on - strand, within RPSI07_RS24550 at 1624.175 kb on - strand, within RPSI07_RS24550 at 1624.175 kb on - strand, within RPSI07_RS24550 at 1624.198 kb on + strand, within RPSI07_RS24550 at 1624.216 kb on - strand, within RPSI07_RS24550 at 1624.226 kb on + strand, within RPSI07_RS24550 at 1624.226 kb on + strand, within RPSI07_RS24550 at 1624.226 kb on + strand, within RPSI07_RS24550 at 1624.226 kb on + strand, within RPSI07_RS24550 at 1624.227 kb on - strand, within RPSI07_RS24550 at 1624.227 kb on - strand, within RPSI07_RS24550 at 1624.227 kb on - strand, within RPSI07_RS24550 at 1624.228 kb on + strand, within RPSI07_RS24550 at 1624.228 kb on + strand, within RPSI07_RS24550 at 1624.228 kb on + strand, within RPSI07_RS24550 at 1624.228 kb on + strand, within RPSI07_RS24550 at 1624.228 kb on + strand, within RPSI07_RS24550 at 1624.228 kb on + strand, within RPSI07_RS24550 at 1624.229 kb on - strand, within RPSI07_RS24550 at 1624.229 kb on - strand, within RPSI07_RS24550 at 1624.229 kb on - strand, within RPSI07_RS24550 at 1624.229 kb on - strand, within RPSI07_RS24550 at 1624.229 kb on - strand, within RPSI07_RS24550 at 1624.229 kb on - strand, within RPSI07_RS24550 at 1624.265 kb on + strand, within RPSI07_RS24550 at 1624.266 kb on - strand, within RPSI07_RS24550 at 1624.266 kb on - strand, within RPSI07_RS24550 at 1624.266 kb on - strand, within RPSI07_RS24550 at 1624.266 kb on - strand, within RPSI07_RS24550 at 1624.266 kb on - strand, within RPSI07_RS24550 at 1624.266 kb on - strand, within RPSI07_RS24550 at 1624.303 kb on + strand, within RPSI07_RS24550 at 1624.304 kb on - strand, within RPSI07_RS24550 at 1624.304 kb on - strand, within RPSI07_RS24550 at 1624.304 kb on - strand, within RPSI07_RS24550 at 1624.304 kb on - strand, within RPSI07_RS24550 at 1624.304 kb on - strand, within RPSI07_RS24550 at 1624.304 kb on - strand, within RPSI07_RS24550 at 1624.327 kb on + strand, within RPSI07_RS24550 at 1624.328 kb on + strand, within RPSI07_RS24550 at 1624.328 kb on + strand, within RPSI07_RS24550 at 1624.328 kb on + strand, within RPSI07_RS24550 at 1624.328 kb on + strand, within RPSI07_RS24550 at 1624.328 kb on + strand, within RPSI07_RS24550 at 1624.329 kb on - strand, within RPSI07_RS24550 at 1624.329 kb on - strand, within RPSI07_RS24550 at 1624.329 kb on - strand, within RPSI07_RS24550 at 1624.329 kb on - strand, within RPSI07_RS24550 at 1624.329 kb on - strand, within RPSI07_RS24550 at 1624.362 kb on + strand, within RPSI07_RS24550 at 1624.362 kb on + strand, within RPSI07_RS24550 at 1624.363 kb on - strand, within RPSI07_RS24550 at 1624.396 kb on + strand, within RPSI07_RS24550 at 1624.396 kb on + strand, within RPSI07_RS24550 at 1624.396 kb on + strand, within RPSI07_RS24550 at 1624.397 kb on - strand, within RPSI07_RS24550 at 1624.397 kb on - strand, within RPSI07_RS24550 at 1624.397 kb on - strand, within RPSI07_RS24550 at 1624.510 kb on + strand, within RPSI07_RS24550 at 1624.510 kb on + strand, within RPSI07_RS24550 at 1624.511 kb on - strand, within RPSI07_RS24550 at 1624.511 kb on - strand, within RPSI07_RS24550 at 1624.511 kb on - strand, within RPSI07_RS24550 at 1624.514 kb on + strand, within RPSI07_RS24550 at 1624.515 kb on - strand, within RPSI07_RS24550 at 1624.515 kb on - strand, within RPSI07_RS24550 at 1624.515 kb on - strand, within RPSI07_RS24550 at 1624.515 kb on - strand, within RPSI07_RS24550 at 1624.515 kb on - strand, within RPSI07_RS24550 at 1624.515 kb on - strand, within RPSI07_RS24550 at 1624.515 kb on - strand, within RPSI07_RS24550
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 1,622,245 - -0.2 1,622,245 - -1.0 1,622,546 + RPSI07_RS05965 0.74 +0.3 1,622,564 + RPSI07_RS05965 0.78 -1.3 1,622,564 + RPSI07_RS05965 0.78 -1.3 1,622,565 - RPSI07_RS05965 0.79 +2.4 1,622,565 - RPSI07_RS05965 0.79 +0.3 1,622,565 - RPSI07_RS05965 0.79 -0.9 1,622,618 + +0.4 1,622,618 + -0.3 1,622,619 - +2.2 1,622,619 - -1.7 1,622,619 - +1.2 1,622,619 - -0.6 1,622,619 - -1.1 1,622,619 - -1.8 1,622,619 - +0.5 1,622,687 + -0.2 1,622,687 + -1.2 1,622,687 + +0.1 1,622,687 + -1.3 1,622,687 + -0.6 1,622,688 - -0.9 1,622,689 + +1.3 1,622,689 + -0.8 1,622,690 - -0.5 1,622,690 - -1.9 1,622,712 + -0.8 1,622,777 + -2.8 1,622,777 + -1.0 1,622,778 - -0.9 1,622,778 - +0.1 1,622,885 + +1.0 1,622,893 + -0.1 1,622,893 + -1.8 1,622,893 + +1.9 1,622,894 - +0.4 1,622,894 - -1.4 1,622,894 - -0.5 1,622,894 - -1.0 1,622,894 - +0.7 1,622,894 - -1.7 1,622,894 - -2.1 1,622,894 - -2.2 1,622,894 - -0.5 1,622,894 - +2.0 1,623,035 - RPSI07_RS24540 0.65 +3.9 1,623,103 + -2.6 1,623,103 + -0.6 1,623,103 + -0.3 1,623,103 + -2.2 1,623,104 - +0.3 1,623,104 - -0.1 1,623,104 - -0.0 1,623,105 - -1.0 1,623,126 + +2.2 1,623,126 + -1.9 1,623,126 + -0.4 1,623,220 + RPSI07_RS24545 0.13 -0.1 1,623,220 + RPSI07_RS24545 0.13 +2.6 1,623,220 + RPSI07_RS24545 0.13 +0.1 1,623,221 - RPSI07_RS24545 0.13 -1.1 1,623,224 + RPSI07_RS24545 0.14 -0.7 1,623,224 + RPSI07_RS24545 0.14 +0.0 1,623,225 - RPSI07_RS24545 0.14 -1.2 1,623,245 + RPSI07_RS24545 0.20 -0.7 1,623,245 + RPSI07_RS24545 0.20 +0.7 1,623,362 - RPSI07_RS24545 0.53 -0.7 1,623,466 - RPSI07_RS24545 0.81 +0.2 1,623,514 + +0.3 1,623,514 + -0.8 1,623,530 + -1.2 1,623,530 + -1.5 1,623,603 + +0.0 1,623,779 + +0.3 1,623,793 - -0.9 1,623,975 + -0.4 1,623,991 + -0.6 1,623,992 - +0.2 1,623,996 + +0.8 1,623,996 + +1.3 1,623,996 + +0.6 1,624,049 + RPSI07_RS24550 0.11 -1.2 1,624,049 + RPSI07_RS24550 0.11 +0.5 1,624,050 - RPSI07_RS24550 0.11 -1.0 1,624,050 - RPSI07_RS24550 0.11 +0.3 1,624,050 - RPSI07_RS24550 0.11 -2.1 1,624,055 - RPSI07_RS24550 0.11 -0.6 1,624,055 - RPSI07_RS24550 0.11 -0.0 1,624,056 - RPSI07_RS24550 0.11 -1.8 1,624,056 - RPSI07_RS24550 0.11 -2.9 1,624,106 + RPSI07_RS24550 0.15 -0.6 1,624,106 + RPSI07_RS24550 0.15 +2.1 1,624,106 + RPSI07_RS24550 0.15 -2.8 1,624,106 + RPSI07_RS24550 0.15 +0.0 1,624,106 + RPSI07_RS24550 0.15 +0.4 1,624,106 + RPSI07_RS24550 0.15 -0.6 1,624,107 - RPSI07_RS24550 0.15 +0.6 1,624,107 - RPSI07_RS24550 0.15 -0.4 1,624,107 - RPSI07_RS24550 0.15 +1.9 1,624,107 - RPSI07_RS24550 0.15 +1.4 1,624,107 - RPSI07_RS24550 0.15 +0.7 1,624,107 - RPSI07_RS24550 0.15 -2.7 1,624,107 - RPSI07_RS24550 0.15 +1.4 1,624,107 - RPSI07_RS24550 0.15 -0.4 1,624,107 - RPSI07_RS24550 0.15 -1.0 1,624,114 + RPSI07_RS24550 0.16 -0.2 1,624,175 - RPSI07_RS24550 0.20 +1.9 1,624,175 - RPSI07_RS24550 0.20 +0.7 1,624,175 - RPSI07_RS24550 0.20 +0.1 1,624,198 + RPSI07_RS24550 0.22 -1.1 1,624,216 - RPSI07_RS24550 0.23 +0.1 1,624,226 + RPSI07_RS24550 0.24 -1.6 1,624,226 + RPSI07_RS24550 0.24 -1.0 1,624,226 + RPSI07_RS24550 0.24 -0.9 1,624,226 + RPSI07_RS24550 0.24 -3.0 1,624,227 - RPSI07_RS24550 0.24 -0.5 1,624,227 - RPSI07_RS24550 0.24 -0.5 1,624,227 - RPSI07_RS24550 0.24 -0.1 1,624,228 + RPSI07_RS24550 0.24 -1.9 1,624,228 + RPSI07_RS24550 0.24 -2.0 1,624,228 + RPSI07_RS24550 0.24 +0.7 1,624,228 + RPSI07_RS24550 0.24 -0.2 1,624,228 + RPSI07_RS24550 0.24 +0.2 1,624,228 + RPSI07_RS24550 0.24 -0.2 1,624,229 - RPSI07_RS24550 0.24 +3.0 1,624,229 - RPSI07_RS24550 0.24 +1.0 1,624,229 - RPSI07_RS24550 0.24 +0.6 1,624,229 - RPSI07_RS24550 0.24 -1.6 1,624,229 - RPSI07_RS24550 0.24 -1.7 1,624,229 - RPSI07_RS24550 0.24 -1.9 1,624,265 + RPSI07_RS24550 0.27 +0.0 1,624,266 - RPSI07_RS24550 0.27 +0.1 1,624,266 - RPSI07_RS24550 0.27 +0.4 1,624,266 - RPSI07_RS24550 0.27 -1.1 1,624,266 - RPSI07_RS24550 0.27 +0.6 1,624,266 - RPSI07_RS24550 0.27 -1.5 1,624,266 - RPSI07_RS24550 0.27 +0.1 1,624,303 + RPSI07_RS24550 0.30 -2.5 1,624,304 - RPSI07_RS24550 0.30 +1.0 1,624,304 - RPSI07_RS24550 0.30 +1.9 1,624,304 - RPSI07_RS24550 0.30 -0.9 1,624,304 - RPSI07_RS24550 0.30 +1.4 1,624,304 - RPSI07_RS24550 0.30 -1.0 1,624,304 - RPSI07_RS24550 0.30 -1.3 1,624,327 + RPSI07_RS24550 0.32 -0.8 1,624,328 + RPSI07_RS24550 0.32 -1.0 1,624,328 + RPSI07_RS24550 0.32 +2.8 1,624,328 + RPSI07_RS24550 0.32 -0.6 1,624,328 + RPSI07_RS24550 0.32 -0.7 1,624,328 + RPSI07_RS24550 0.32 +1.3 1,624,329 - RPSI07_RS24550 0.32 -0.9 1,624,329 - RPSI07_RS24550 0.32 +0.8 1,624,329 - RPSI07_RS24550 0.32 -1.3 1,624,329 - RPSI07_RS24550 0.32 +0.1 1,624,329 - RPSI07_RS24550 0.32 -2.6 1,624,362 + RPSI07_RS24550 0.35 +0.3 1,624,362 + RPSI07_RS24550 0.35 -1.3 1,624,363 - RPSI07_RS24550 0.35 +1.6 1,624,396 + RPSI07_RS24550 0.37 +1.6 1,624,396 + RPSI07_RS24550 0.37 -0.5 1,624,396 + RPSI07_RS24550 0.37 -1.9 1,624,397 - RPSI07_RS24550 0.37 -1.5 1,624,397 - RPSI07_RS24550 0.37 -1.7 1,624,397 - RPSI07_RS24550 0.37 +0.2 1,624,510 + RPSI07_RS24550 0.46 +0.3 1,624,510 + RPSI07_RS24550 0.46 -1.6 1,624,511 - RPSI07_RS24550 0.46 -2.4 1,624,511 - RPSI07_RS24550 0.46 -2.5 1,624,511 - RPSI07_RS24550 0.46 -1.5 1,624,514 + RPSI07_RS24550 0.46 +0.6 1,624,515 - RPSI07_RS24550 0.46 -0.6 1,624,515 - RPSI07_RS24550 0.46 -0.1 1,624,515 - RPSI07_RS24550 0.46 +0.0 1,624,515 - RPSI07_RS24550 0.46 +2.9 1,624,515 - RPSI07_RS24550 0.46 -1.3 1,624,515 - RPSI07_RS24550 0.46 -1.3 1,624,515 - RPSI07_RS24550 0.46 -1.1
Or see this region's nucleotide sequence