Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS23280

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
3,367,713	-				-1.7
3,367,713	-				+1.7
3,368,101	+		RPSI07_RS23275	0.51	-0.2
3,368,101	+		RPSI07_RS23275	0.51	+0.9
3,368,215	+		RPSI07_RS23275	0.72	-0.7
3,368,215	+		RPSI07_RS23275	0.72	-2.0
3,368,215	+		RPSI07_RS23275	0.72	+0.7
3,368,215	+		RPSI07_RS23275	0.72	-0.1
3,368,215	+		RPSI07_RS23275	0.72	+0.3
3,368,216	-		RPSI07_RS23275	0.72	+0.1
3,368,216	-		RPSI07_RS23275	0.72	-1.5
3,368,216	-				+0.9
3,368,216	-		RPSI07_RS23275	0.72	+0.4
3,368,218	+		RPSI07_RS23275	0.73	-0.4
3,368,218	+		RPSI07_RS23275	0.73	+0.4
3,368,219	-		RPSI07_RS23275	0.73	+0.2
3,368,219	-		RPSI07_RS23275	0.73	-1.7
3,368,256	+		RPSI07_RS23275	0.80	-1.4
3,368,256	+		RPSI07_RS23275	0.80	-0.4
3,368,256	+		RPSI07_RS23275	0.80	-2.1
3,368,256	+		RPSI07_RS23275	0.80	+0.4
3,368,256	+		RPSI07_RS23275	0.80	+0.9
3,368,256	+		RPSI07_RS23275	0.80	-0.4
3,368,256	+		RPSI07_RS23275	0.80	-0.7
3,368,256	+		RPSI07_RS23275	0.80	+1.3
3,368,256	+		RPSI07_RS23275	0.80	-0.4
3,368,256	+		RPSI07_RS23275	0.80	-0.7
3,368,256	+		RPSI07_RS23275	0.80	+0.1
3,368,256	+		RPSI07_RS23275	0.80	+0.3
3,368,257	-		RPSI07_RS23275	0.80	-0.9
3,368,257	-		RPSI07_RS23275	0.80	+2.3
3,368,257	-		RPSI07_RS23275	0.80	-0.2
3,368,257	-		RPSI07_RS23275	0.80	-1.1
3,368,257	-		RPSI07_RS23275	0.80	-2.1
3,368,257	-		RPSI07_RS23275	0.80	-1.7
3,368,257	-		RPSI07_RS23275	0.80	-0.9
3,368,257	-		RPSI07_RS23275	0.80	-0.2
3,368,257	-		RPSI07_RS23275	0.80	+0.9
3,368,257	-		RPSI07_RS23275	0.80	-2.2
3,368,302	+		RPSI07_RS23275	0.88	-2.0
3,368,302	+		RPSI07_RS23275	0.88	+0.7
3,368,303	-		RPSI07_RS23275	0.89	+1.3
3,368,303	-		RPSI07_RS23275	0.89	-1.8
3,368,303	-		RPSI07_RS23275	0.89	-0.0
3,368,340	+				+1.7
3,368,340	+				+1.2
3,368,341	-				-1.8
3,368,341	-				-0.9
3,368,341	-				+0.6
3,368,341	-				-1.7
3,368,342	-				+2.1
3,368,457	+				+0.6
3,368,489	+				+0.5
3,368,496	+				+1.0
3,368,496	+				+0.2
3,368,496	+				+0.4
3,368,496	+				+1.0
3,368,496	+				-1.3
3,368,497	-				+1.9
3,368,497	-				-1.4
3,368,497	-				-0.8
3,368,497	-				+1.3
3,368,504	-				-0.6
3,368,558	+				-0.6
3,368,558	+				-2.0
3,368,558	+				-2.2
3,368,558	+				-0.8
3,368,558	+				-0.1
3,368,559	-				-2.1
3,368,559	-				-0.5
3,368,559	-				-1.3
3,368,559	-				-0.8
3,368,559	-				-0.3
3,368,881	+		RPSI07_RS23280	0.30	-1.5
3,368,882	-		RPSI07_RS23280	0.30	-1.6
3,368,884	+		RPSI07_RS23280	0.31	+2.6
3,368,884	+		RPSI07_RS23280	0.31	-2.2
3,368,884	+		RPSI07_RS23280	0.31	-3.3
3,368,885	-		RPSI07_RS23280	0.31	+0.5
3,368,893	+		RPSI07_RS23280	0.31	+1.4
3,369,112	+		RPSI07_RS23280	0.53	-1.3
3,369,143	+		RPSI07_RS23280	0.56	+0.5
3,369,144	-		RPSI07_RS23280	0.56	-1.5
3,369,145	+		RPSI07_RS23280	0.56	-1.0
3,369,175	+		RPSI07_RS23280	0.59	-1.6
3,369,314	-		RPSI07_RS23280	0.73	-0.8
3,369,314	-		RPSI07_RS23280	0.73	-0.2
3,369,526	+				+1.8
3,369,526	+				-1.5
3,369,526	+				+0.8
3,369,527	-				-0.5
3,369,527	-				+0.5
3,369,527	-				+0.5
3,369,527	-				-0.4
3,369,600	-				-1.0
3,369,602	+				-0.3
3,369,602	+				-1.7
3,369,603	-				-1.0
3,369,603	-				-0.1
3,369,603	-				+1.2
3,369,658	+				-0.7
3,369,889	+		RPSI07_RS23285	0.33	+0.7
3,369,890	-		RPSI07_RS23285	0.34	-1.5
3,369,938	-		RPSI07_RS23285	0.43	-0.5
3,369,994	+		RPSI07_RS23285	0.54	+0.7
3,369,994	+		RPSI07_RS23285	0.54	+0.6
3,369,994	+		RPSI07_RS23285	0.54	+0.6
3,369,995	-		RPSI07_RS23285	0.55	+1.6
3,369,995	-		RPSI07_RS23285	0.55	-1.5
3,369,997	+		RPSI07_RS23285	0.55	-1.2
3,369,997	+		RPSI07_RS23285	0.55	-0.1
3,369,998	-		RPSI07_RS23285	0.55	-2.3
3,369,998	-		RPSI07_RS23285	0.55	+1.1
3,369,998	-		RPSI07_RS23285	0.55	-0.7
3,370,073	-		RPSI07_RS23285	0.70	+0.2
3,370,090	+		RPSI07_RS23285	0.74	-1.0
3,370,090	+		RPSI07_RS23285	0.74	+1.7
3,370,091	-		RPSI07_RS23285	0.74	+1.0
3,370,091	-		RPSI07_RS23285	0.74	+1.0
3,370,091	-		RPSI07_RS23285	0.74	-0.8
3,370,091	-		RPSI07_RS23285	0.74	-0.8
3,370,091	-		RPSI07_RS23285	0.74	+0.1
3,370,091	-		RPSI07_RS23285	0.74	-1.0
3,370,091	-		RPSI07_RS23285	0.74	-1.1
3,370,091	-		RPSI07_RS23285	0.74	-2.1
3,370,091	-		RPSI07_RS23285	0.74	-0.3
3,370,093	+		RPSI07_RS23285	0.74	-0.8
3,370,094	-		RPSI07_RS23285	0.74	+0.9
3,370,221	-				+0.4
3,370,221	-				-0.2
3,370,221	-				-2.5
3,370,245	-				-2.4
3,370,245	-				-0.7
3,370,263	+				-0.9
3,370,263	+				-0.3
3,370,264	-				+0.9
3,370,264	-				-0.8
3,370,362	+				-1.4
3,370,362	+				-1.3
3,370,363	-				+0.5
3,370,383	+				-2.0
3,370,509	+		RPSI07_RS23290	0.19	+2.7
3,370,510	-		RPSI07_RS23290	0.19	-0.7
3,370,510	-		RPSI07_RS23290	0.19	+1.0
3,370,510	-		RPSI07_RS23290	0.19	-1.5
3,370,539	+		RPSI07_RS23290	0.23	-2.2
3,370,539	+		RPSI07_RS23290	0.23	-0.1
3,370,539	+		RPSI07_RS23290	0.23	-0.5
3,370,539	+		RPSI07_RS23290	0.23	+0.5
3,370,539	+		RPSI07_RS23290	0.23	-0.1
3,370,540	-		RPSI07_RS23290	0.23	+0.1
3,370,540	-		RPSI07_RS23290	0.23	-0.3
3,370,540	-		RPSI07_RS23290	0.23	-0.6
3,370,540	-		RPSI07_RS23290	0.23	-0.4
3,370,540	-		RPSI07_RS23290	0.23	-1.6
3,370,540	-		RPSI07_RS23290	0.23	-2.9
3,370,582	-		RPSI07_RS23290	0.28	-0.4