Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS13585 and RPSI07_RS13590 are separated by 59 nucleotides RPSI07_RS13590 and RPSI07_RS13595 are separated by 107 nucleotides RPSI07_RS13595 and RPSI07_RS13600 are separated by 90 nucleotides
RPSI07_RS13585: RPSI07_RS13585 - tRNA glutamyl-Q(34) synthetase GluQRS, at 1,238,958 to 1,239,905
_RS13585
RPSI07_RS13590: RPSI07_RS13590 - LysR family transcriptional regulator, at 1,239,965 to 1,240,867
_RS13590
RPSI07_RS13595: RPSI07_RS13595 - pirin family protein, at 1,240,975 to 1,241,673
_RS13595
RPSI07_RS13600: RPSI07_RS13600 - flavodoxin family protein, at 1,241,764 to 1,242,336
_RS13600
Position (kb) 1239
1240
1241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1239.017 kb on - strand at 1239.173 kb on - strand, within RPSI07_RS13585 at 1239.208 kb on + strand, within RPSI07_RS13585 at 1239.209 kb on - strand, within RPSI07_RS13585 at 1239.209 kb on - strand, within RPSI07_RS13585 at 1239.302 kb on - strand, within RPSI07_RS13585 at 1239.372 kb on - strand, within RPSI07_RS13585 at 1239.945 kb on - strand at 1239.945 kb on - strand at 1239.967 kb on - strand at 1239.967 kb on - strand at 1240.026 kb on - strand at 1240.267 kb on + strand, within RPSI07_RS13590 at 1240.267 kb on + strand, within RPSI07_RS13590 at 1240.268 kb on - strand, within RPSI07_RS13590 at 1240.268 kb on - strand, within RPSI07_RS13590 at 1240.521 kb on + strand, within RPSI07_RS13590 at 1240.521 kb on + strand, within RPSI07_RS13590 at 1240.521 kb on + strand, within RPSI07_RS13590 at 1240.522 kb on - strand, within RPSI07_RS13590 at 1240.761 kb on + strand, within RPSI07_RS13590 at 1240.761 kb on + strand, within RPSI07_RS13590 at 1240.761 kb on + strand, within RPSI07_RS13590 at 1240.762 kb on - strand, within RPSI07_RS13590 at 1240.762 kb on - strand, within RPSI07_RS13590 at 1240.762 kb on - strand, within RPSI07_RS13590 at 1241.008 kb on + strand at 1241.008 kb on + strand at 1241.035 kb on + strand at 1241.036 kb on - strand at 1241.059 kb on + strand, within RPSI07_RS13595 at 1241.059 kb on + strand, within RPSI07_RS13595 at 1241.059 kb on + strand, within RPSI07_RS13595 at 1241.059 kb on + strand, within RPSI07_RS13595 at 1241.060 kb on - strand, within RPSI07_RS13595 at 1241.060 kb on - strand, within RPSI07_RS13595 at 1241.060 kb on - strand, within RPSI07_RS13595 at 1241.173 kb on + strand, within RPSI07_RS13595 at 1241.173 kb on + strand, within RPSI07_RS13595 at 1241.174 kb on - strand, within RPSI07_RS13595 at 1241.286 kb on + strand, within RPSI07_RS13595 at 1241.363 kb on - strand, within RPSI07_RS13595 at 1241.470 kb on + strand, within RPSI07_RS13595 at 1241.533 kb on + strand, within RPSI07_RS13595 at 1241.533 kb on + strand, within RPSI07_RS13595 at 1241.533 kb on + strand, within RPSI07_RS13595 at 1241.785 kb on + strand at 1241.785 kb on + strand at 1241.786 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 1,239,017 - -2.3 1,239,173 - RPSI07_RS13585 0.23 +0.7 1,239,208 + RPSI07_RS13585 0.26 +1.6 1,239,209 - RPSI07_RS13585 0.26 -0.3 1,239,209 - RPSI07_RS13585 0.26 +1.6 1,239,302 - RPSI07_RS13585 0.36 +1.8 1,239,372 - RPSI07_RS13585 0.44 -2.7 1,239,945 - -2.4 1,239,945 - -0.1 1,239,967 - -1.7 1,239,967 - -1.9 1,240,026 - -0.9 1,240,267 + RPSI07_RS13590 0.33 +0.6 1,240,267 + RPSI07_RS13590 0.33 -0.2 1,240,268 - RPSI07_RS13590 0.34 -2.3 1,240,268 - RPSI07_RS13590 0.34 +0.9 1,240,521 + RPSI07_RS13590 0.62 -0.2 1,240,521 + RPSI07_RS13590 0.62 +0.6 1,240,521 + RPSI07_RS13590 0.62 +1.3 1,240,522 - RPSI07_RS13590 0.62 -0.3 1,240,761 + RPSI07_RS13590 0.88 +1.2 1,240,761 + RPSI07_RS13590 0.88 -1.0 1,240,761 + RPSI07_RS13590 0.88 -0.9 1,240,762 - RPSI07_RS13590 0.88 -1.2 1,240,762 - RPSI07_RS13590 0.88 +0.3 1,240,762 - RPSI07_RS13590 0.88 -2.2 1,241,008 + -2.5 1,241,008 + -2.0 1,241,035 + +0.1 1,241,036 - +1.7 1,241,059 + RPSI07_RS13595 0.12 -1.7 1,241,059 + RPSI07_RS13595 0.12 +1.6 1,241,059 + RPSI07_RS13595 0.12 +1.0 1,241,059 + RPSI07_RS13595 0.12 -0.9 1,241,060 - RPSI07_RS13595 0.12 -0.2 1,241,060 - RPSI07_RS13595 0.12 +1.0 1,241,060 - RPSI07_RS13595 0.12 -0.5 1,241,173 + RPSI07_RS13595 0.28 +0.6 1,241,173 + RPSI07_RS13595 0.28 -2.9 1,241,174 - RPSI07_RS13595 0.28 +1.3 1,241,286 + RPSI07_RS13595 0.44 -0.7 1,241,363 - RPSI07_RS13595 0.56 -1.3 1,241,470 + RPSI07_RS13595 0.71 -0.4 1,241,533 + RPSI07_RS13595 0.80 -0.1 1,241,533 + RPSI07_RS13595 0.80 -0.4 1,241,533 + RPSI07_RS13595 0.80 +1.6 1,241,785 + +0.8 1,241,785 + -0.9 1,241,786 - -1.2
Or see this region's nucleotide sequence