Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1112

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1110 and PfGW456L13_1111 are separated by 54 nucleotidesPfGW456L13_1111 and PfGW456L13_1112 are separated by 30 nucleotidesPfGW456L13_1112 and PfGW456L13_1113 are separated by 129 nucleotides PfGW456L13_1110 - GbcA Glycine betaine demethylase subunit A, at 1,232,339 to 1,233,634 _1110 PfGW456L13_1111 - GbcA Glycine betaine demethylase subunit A, at 1,233,689 to 1,233,886 _1111 PfGW456L13_1112 - GbcB Glycine betaine demethylase subunit B, at 1,233,917 to 1,235,017 _1112 PfGW456L13_1113 - Probable short-chain dehydrogenase, at 1,235,147 to 1,235,971 _1113 Position (kb) 1233 1234 1235 1236Strain fitness (log2 ratio) -2 -1 0 1 2at 1232.988 kb on + strand, within PfGW456L13_1110at 1232.989 kb on - strand, within PfGW456L13_1110at 1233.079 kb on - strand, within PfGW456L13_1110at 1233.090 kb on + strand, within PfGW456L13_1110at 1233.090 kb on + strand, within PfGW456L13_1110at 1233.090 kb on + strand, within PfGW456L13_1110at 1233.090 kb on + strand, within PfGW456L13_1110at 1233.090 kb on + strand, within PfGW456L13_1110at 1233.090 kb on + strand, within PfGW456L13_1110at 1233.090 kb on + strand, within PfGW456L13_1110at 1233.091 kb on - strand, within PfGW456L13_1110at 1233.091 kb on - strand, within PfGW456L13_1110at 1233.091 kb on - strand, within PfGW456L13_1110at 1233.156 kb on + strand, within PfGW456L13_1110at 1233.156 kb on + strand, within PfGW456L13_1110at 1233.156 kb on + strand, within PfGW456L13_1110at 1233.157 kb on - strand, within PfGW456L13_1110at 1233.157 kb on - strand, within PfGW456L13_1110at 1233.157 kb on - strand, within PfGW456L13_1110at 1233.261 kb on + strand, within PfGW456L13_1110at 1233.261 kb on + strand, within PfGW456L13_1110at 1233.261 kb on + strand, within PfGW456L13_1110at 1233.261 kb on + strand, within PfGW456L13_1110at 1233.262 kb on - strand, within PfGW456L13_1110at 1233.262 kb on - strand, within PfGW456L13_1110at 1233.277 kb on - strand, within PfGW456L13_1110at 1233.423 kb on + strand, within PfGW456L13_1110at 1233.423 kb on + strand, within PfGW456L13_1110at 1233.424 kb on - strand, within PfGW456L13_1110at 1233.424 kb on - strand, within PfGW456L13_1110at 1233.424 kb on - strand, within PfGW456L13_1110at 1233.424 kb on - strand, within PfGW456L13_1110at 1233.424 kb on - strand, within PfGW456L13_1110at 1233.437 kb on - strand, within PfGW456L13_1110at 1233.523 kb on - strandat 1233.619 kb on + strandat 1233.619 kb on + strandat 1233.619 kb on + strandat 1233.622 kb on + strandat 1233.622 kb on + strandat 1233.622 kb on + strandat 1233.622 kb on + strandat 1233.623 kb on - strandat 1233.623 kb on - strandat 1233.623 kb on - strandat 1233.639 kb on + strandat 1233.640 kb on - strandat 1233.640 kb on - strandat 1233.640 kb on - strandat 1233.640 kb on - strandat 1233.640 kb on - strandat 1233.640 kb on - strandat 1233.690 kb on + strandat 1233.690 kb on + strandat 1233.691 kb on - strandat 1233.691 kb on - strandat 1233.701 kb on + strandat 1233.701 kb on + strandat 1233.702 kb on - strandat 1233.719 kb on - strand, within PfGW456L13_1111at 1233.844 kb on + strand, within PfGW456L13_1111at 1233.844 kb on + strand, within PfGW456L13_1111at 1233.845 kb on - strand, within PfGW456L13_1111at 1233.848 kb on + strand, within PfGW456L13_1111at 1233.848 kb on + strand, within PfGW456L13_1111at 1233.848 kb on + strand, within PfGW456L13_1111at 1233.849 kb on - strand, within PfGW456L13_1111at 1233.849 kb on - strand, within PfGW456L13_1111at 1233.849 kb on - strand, within PfGW456L13_1111at 1233.868 kb on + strandat 1233.925 kb on + strandat 1233.925 kb on + strandat 1233.925 kb on + strandat 1233.926 kb on - strandat 1233.926 kb on - strandat 1234.121 kb on + strand, within PfGW456L13_1112at 1234.121 kb on + strand, within PfGW456L13_1112at 1234.122 kb on - strand, within PfGW456L13_1112at 1234.298 kb on + strand, within PfGW456L13_1112at 1234.298 kb on + strand, within PfGW456L13_1112at 1234.299 kb on - strand, within PfGW456L13_1112at 1234.318 kb on + strand, within PfGW456L13_1112at 1234.352 kb on + strand, within PfGW456L13_1112at 1234.353 kb on - strand, within PfGW456L13_1112at 1234.384 kb on + strand, within PfGW456L13_1112at 1234.385 kb on - strand, within PfGW456L13_1112at 1234.418 kb on + strand, within PfGW456L13_1112at 1234.418 kb on + strand, within PfGW456L13_1112at 1234.419 kb on - strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.601 kb on + strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.602 kb on - strand, within PfGW456L13_1112at 1234.603 kb on + strand, within PfGW456L13_1112at 1234.603 kb on + strand, within PfGW456L13_1112at 1234.603 kb on + strand, within PfGW456L13_1112at 1234.603 kb on + strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.604 kb on - strand, within PfGW456L13_1112at 1234.873 kb on + strand, within PfGW456L13_1112at 1234.874 kb on - strand, within PfGW456L13_1112at 1234.991 kb on - strandat 1235.015 kb on + strandat 1235.029 kb on + strandat 1235.030 kb on - strandat 1235.039 kb on - strandat 1235.072 kb on + strandat 1235.472 kb on + strand, within PfGW456L13_1113at 1235.486 kb on - strand, within PfGW456L13_1113at 1235.486 kb on - strand, within PfGW456L13_1113at 1235.486 kb on - strand, within PfGW456L13_1113at 1235.487 kb on + strand, within PfGW456L13_1113at 1235.487 kb on + strand, within PfGW456L13_1113at 1235.488 kb on - strand, within PfGW456L13_1113at 1235.488 kb on - strand, within PfGW456L13_1113at 1235.488 kb on - strand, within PfGW456L13_1113at 1235.496 kb on + strand, within PfGW456L13_1113at 1235.496 kb on + strand, within PfGW456L13_1113at 1235.497 kb on - strand, within PfGW456L13_1113at 1235.497 kb on - strand, within PfGW456L13_1113at 1235.497 kb on - strand, within PfGW456L13_1113at 1235.497 kb on - strand, within PfGW456L13_1113at 1235.600 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.702 kb on + strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.703 kb on - strand, within PfGW456L13_1113at 1235.975 kb on + strandat 1235.975 kb on + strandat 1235.975 kb on + strandat 1235.975 kb on + strandat 1235.975 kb on + strandat 1235.975 kb on + strandat 1235.975 kb on + strandat 1235.976 kb on - strandat 1235.976 kb on - strandat 1235.987 kb on + strandat 1235.988 kb on - strandat 1235.988 kb on - strandat 1235.988 kb on - strandat 1235.988 kb on - strandat 1235.993 kb on + strandat 1235.993 kb on + strandat 1235.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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1,232,988 + PfGW456L13_1110 0.50 +0.5
1,232,989 - PfGW456L13_1110 0.50 -0.2
1,233,079 - PfGW456L13_1110 0.57 +0.2
1,233,090 + PfGW456L13_1110 0.58 -0.5
1,233,090 + PfGW456L13_1110 0.58 -0.5
1,233,090 + PfGW456L13_1110 0.58 -0.7
1,233,090 + PfGW456L13_1110 0.58 -0.7
1,233,090 + PfGW456L13_1110 0.58 +0.3
1,233,090 + PfGW456L13_1110 0.58 +2.2
1,233,090 + PfGW456L13_1110 0.58 -0.3
1,233,091 - PfGW456L13_1110 0.58 -0.1
1,233,091 - PfGW456L13_1110 0.58 +0.1
1,233,091 - PfGW456L13_1110 0.58 +1.3
1,233,156 + PfGW456L13_1110 0.63 +0.1
1,233,156 + PfGW456L13_1110 0.63 -0.0
1,233,156 + PfGW456L13_1110 0.63 +0.7
1,233,157 - PfGW456L13_1110 0.63 +0.6
1,233,157 - PfGW456L13_1110 0.63 +0.3
1,233,157 - PfGW456L13_1110 0.63 +0.4
1,233,261 + PfGW456L13_1110 0.71 -0.3
1,233,261 + PfGW456L13_1110 0.71 +0.1
1,233,261 + PfGW456L13_1110 0.71 +0.4
1,233,261 + PfGW456L13_1110 0.71 -0.2
1,233,262 - PfGW456L13_1110 0.71 -0.1
1,233,262 - PfGW456L13_1110 0.71 -0.2
1,233,277 - PfGW456L13_1110 0.72 +0.6
1,233,423 + PfGW456L13_1110 0.84 -1.2
1,233,423 + PfGW456L13_1110 0.84 +1.3
1,233,424 - PfGW456L13_1110 0.84 -0.9
1,233,424 - PfGW456L13_1110 0.84 +0.1
1,233,424 - PfGW456L13_1110 0.84 -1.0
1,233,424 - PfGW456L13_1110 0.84 -0.8
1,233,424 - PfGW456L13_1110 0.84 +0.1
1,233,437 - PfGW456L13_1110 0.85 +0.9
1,233,523 - -1.7
1,233,619 + +0.5
1,233,619 + -0.3
1,233,619 + -1.0
1,233,622 + +0.8
1,233,622 + +0.7
1,233,622 + -0.4
1,233,622 + -0.4
1,233,623 - +0.4
1,233,623 - -0.1
1,233,623 - +0.6
1,233,639 + -0.2
1,233,640 - +0.2
1,233,640 - +0.5
1,233,640 - -0.0
1,233,640 - +0.0
1,233,640 - -0.7
1,233,640 - +0.6
1,233,690 + +0.4
1,233,690 + -0.2
1,233,691 - -0.8
1,233,691 - +0.6
1,233,701 + -1.6
1,233,701 + +0.3
1,233,702 - +0.6
1,233,719 - PfGW456L13_1111 0.15 -1.2
1,233,844 + PfGW456L13_1111 0.78 -0.7
1,233,844 + PfGW456L13_1111 0.78 +0.4
1,233,845 - PfGW456L13_1111 0.79 -0.8
1,233,848 + PfGW456L13_1111 0.80 +0.2
1,233,848 + PfGW456L13_1111 0.80 -0.1
1,233,848 + PfGW456L13_1111 0.80 -0.7
1,233,849 - PfGW456L13_1111 0.81 -0.1
1,233,849 - PfGW456L13_1111 0.81 -0.8
1,233,849 - PfGW456L13_1111 0.81 -0.3
1,233,868 + -0.0
1,233,925 + +1.2
1,233,925 + +1.0
1,233,925 + -0.3
1,233,926 - +0.3
1,233,926 - -0.6
1,234,121 + PfGW456L13_1112 0.19 -0.5
1,234,121 + PfGW456L13_1112 0.19 -0.8
1,234,122 - PfGW456L13_1112 0.19 +0.3
1,234,298 + PfGW456L13_1112 0.35 -0.7
1,234,298 + PfGW456L13_1112 0.35 -0.1
1,234,299 - PfGW456L13_1112 0.35 +0.2
1,234,318 + PfGW456L13_1112 0.36 +0.4
1,234,352 + PfGW456L13_1112 0.40 +1.1
1,234,353 - PfGW456L13_1112 0.40 +0.8
1,234,384 + PfGW456L13_1112 0.42 +0.4
1,234,385 - PfGW456L13_1112 0.43 -1.6
1,234,418 + PfGW456L13_1112 0.46 -0.3
1,234,418 + PfGW456L13_1112 0.46 +0.3
1,234,419 - PfGW456L13_1112 0.46 -0.2
1,234,601 + PfGW456L13_1112 0.62 -0.4
1,234,601 + PfGW456L13_1112 0.62 +1.0
1,234,601 + PfGW456L13_1112 0.62 +0.1
1,234,601 + PfGW456L13_1112 0.62 -0.1
1,234,601 + PfGW456L13_1112 0.62 -0.6
1,234,601 + PfGW456L13_1112 0.62 -1.0
1,234,601 + PfGW456L13_1112 0.62 +1.1
1,234,601 + PfGW456L13_1112 0.62 +0.8
1,234,601 + PfGW456L13_1112 0.62 +0.3
1,234,601 + PfGW456L13_1112 0.62 +0.3
1,234,601 + PfGW456L13_1112 0.62 -1.0
1,234,601 + PfGW456L13_1112 0.62 -0.5
1,234,602 - PfGW456L13_1112 0.62 -0.0
1,234,602 - PfGW456L13_1112 0.62 -0.1
1,234,602 - PfGW456L13_1112 0.62 +0.5
1,234,602 - PfGW456L13_1112 0.62 -1.3
1,234,602 - PfGW456L13_1112 0.62 -0.2
1,234,602 - PfGW456L13_1112 0.62 -0.0
1,234,602 - PfGW456L13_1112 0.62 +0.1
1,234,602 - PfGW456L13_1112 0.62 -0.1
1,234,602 - PfGW456L13_1112 0.62 +0.6
1,234,602 - PfGW456L13_1112 0.62 -0.5
1,234,603 + PfGW456L13_1112 0.62 +0.2
1,234,603 + PfGW456L13_1112 0.62 -1.2
1,234,603 + PfGW456L13_1112 0.62 -1.4
1,234,603 + PfGW456L13_1112 0.62 -0.8
1,234,604 - PfGW456L13_1112 0.62 -0.2
1,234,604 - PfGW456L13_1112 0.62 -0.4
1,234,604 - PfGW456L13_1112 0.62 +0.2
1,234,604 - PfGW456L13_1112 0.62 +0.4
1,234,604 - PfGW456L13_1112 0.62 +0.0
1,234,604 - PfGW456L13_1112 0.62 -0.7
1,234,604 - PfGW456L13_1112 0.62 -1.0
1,234,604 - PfGW456L13_1112 0.62 -0.7
1,234,604 - PfGW456L13_1112 0.62 -0.5
1,234,604 - PfGW456L13_1112 0.62 -0.1
1,234,604 - PfGW456L13_1112 0.62 +0.1
1,234,873 + PfGW456L13_1112 0.87 -0.1
1,234,874 - PfGW456L13_1112 0.87 -0.5
1,234,991 - +0.6
1,235,015 + -0.2
1,235,029 + +2.0
1,235,030 - +0.5
1,235,039 - +0.2
1,235,072 + +0.9
1,235,472 + PfGW456L13_1113 0.39 +0.6
1,235,486 - PfGW456L13_1113 0.41 -0.1
1,235,486 - PfGW456L13_1113 0.41 -0.2
1,235,486 - PfGW456L13_1113 0.41 +0.0
1,235,487 + PfGW456L13_1113 0.41 +0.2
1,235,487 + PfGW456L13_1113 0.41 +0.5
1,235,488 - PfGW456L13_1113 0.41 +0.6
1,235,488 - PfGW456L13_1113 0.41 -0.0
1,235,488 - PfGW456L13_1113 0.41 -1.8
1,235,496 + PfGW456L13_1113 0.42 +1.4
1,235,496 + PfGW456L13_1113 0.42 -1.0
1,235,497 - PfGW456L13_1113 0.42 +0.3
1,235,497 - PfGW456L13_1113 0.42 -0.0
1,235,497 - PfGW456L13_1113 0.42 +1.4
1,235,497 - PfGW456L13_1113 0.42 -0.2
1,235,600 + PfGW456L13_1113 0.55 +0.4
1,235,702 + PfGW456L13_1113 0.67 +0.0
1,235,702 + PfGW456L13_1113 0.67 -0.1
1,235,702 + PfGW456L13_1113 0.67 +0.3
1,235,702 + PfGW456L13_1113 0.67 -0.4
1,235,702 + PfGW456L13_1113 0.67 +1.1
1,235,702 + PfGW456L13_1113 0.67 -0.7
1,235,702 + PfGW456L13_1113 0.67 -0.0
1,235,702 + PfGW456L13_1113 0.67 +0.8
1,235,702 + PfGW456L13_1113 0.67 +0.1
1,235,702 + PfGW456L13_1113 0.67 -0.4
1,235,703 - PfGW456L13_1113 0.67 -0.2
1,235,703 - PfGW456L13_1113 0.67 -0.7
1,235,703 - PfGW456L13_1113 0.67 -0.4
1,235,703 - PfGW456L13_1113 0.67 -0.8
1,235,703 - PfGW456L13_1113 0.67 +0.9
1,235,703 - PfGW456L13_1113 0.67 +0.7
1,235,703 - PfGW456L13_1113 0.67 -0.5
1,235,703 - PfGW456L13_1113 0.67 +0.1
1,235,703 - PfGW456L13_1113 0.67 +0.6
1,235,703 - PfGW456L13_1113 0.67 +0.7
1,235,703 - PfGW456L13_1113 0.67 +1.6
1,235,975 + -0.0
1,235,975 + +0.1
1,235,975 + +0.5
1,235,975 + -0.5
1,235,975 + +0.3
1,235,975 + -1.0
1,235,975 + -0.8
1,235,976 - -0.2
1,235,976 - +0.2
1,235,987 + -0.6
1,235,988 - +0.9
1,235,988 - +0.6
1,235,988 - +0.6
1,235,988 - -0.5
1,235,993 + -0.2
1,235,993 + -0.7
1,235,994 - +0.2

Or see this region's nucleotide sequence