Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS30895

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
4,156,737	+		PFLU_RS18325	0.29	-0.7
4,156,738	-		PFLU_RS18325	0.29	-0.6
4,156,858	+		PFLU_RS18325	0.42	+0.4
4,156,858	+		PFLU_RS18325	0.42	-1.2
4,156,858	+		PFLU_RS18325	0.42	-0.9
4,156,858	+		PFLU_RS18325	0.42	-0.8
4,156,858	+		PFLU_RS18325	0.42	-0.6
4,156,859	-		PFLU_RS18325	0.42	+1.6
4,156,859	-		PFLU_RS18325	0.42	-0.2
4,156,859	-		PFLU_RS18325	0.42	+0.0
4,156,859	-		PFLU_RS18325	0.42	+0.5
4,156,859	-		PFLU_RS18325	0.42	-1.0
4,156,859	-		PFLU_RS18325	0.42	+1.0
4,156,859	-		PFLU_RS18325	0.42	-0.3
4,156,859	-		PFLU_RS18325	0.42	+0.1
4,157,179	+		PFLU_RS18325	0.79	-1.4
4,157,180	-		PFLU_RS18325	0.79	-0.2
4,157,180	-		PFLU_RS18325	0.79	-1.6
4,157,285	+				-0.3
4,157,286	-				-1.1
4,157,286	-				-0.8
4,157,286	-				+0.3
4,157,317	-				+0.1
4,157,317	-				-3.0
4,157,359	-				-0.1
4,157,392	-				+0.4
4,157,392	-				+0.4
4,157,392	-				+0.3
4,157,482	+				-0.1
4,157,483	-				-0.7
4,157,483	-				+0.1
4,157,483	-				-0.8
4,157,483	-				+1.3
4,157,495	-				+0.2
4,157,604	+				-0.7
4,157,604	+				+1.3
4,157,604	+				-1.6
4,157,604	+				-0.7
4,157,605	-				+0.0
4,157,641	-				-0.5
4,157,641	-				-0.3
4,157,656	+				+0.4
4,157,656	+				-0.6
4,157,657	-				+0.6
4,157,675	+				+0.7
4,157,676	-				-1.4
4,157,760	+		PFLU_RS30895	0.29	-1.4
4,157,760	+		PFLU_RS30895	0.29	-0.1
4,157,768	+		PFLU_RS30895	0.31	-0.2
4,157,768	+		PFLU_RS30895	0.31	-0.2
4,157,768	+		PFLU_RS30895	0.31	+0.1
4,157,768	+		PFLU_RS30895	0.31	+1.0
4,157,768	+		PFLU_RS30895	0.31	-1.6
4,157,768	+		PFLU_RS30895	0.31	+1.1
4,157,769	-		PFLU_RS30895	0.32	+0.9
4,157,769	-		PFLU_RS30895	0.32	-1.8
4,157,785	+		PFLU_RS30895	0.37	+0.8
4,157,785	+		PFLU_RS30895	0.37	+0.1
4,157,785	+		PFLU_RS30895	0.37	+0.2
4,157,786	-		PFLU_RS30895	0.37	+0.5
4,157,786	-		PFLU_RS30895	0.37	-0.9
4,157,786	-		PFLU_RS30895	0.37	-1.1
4,157,786	-		PFLU_RS30895	0.37	-0.8
4,157,786	-		PFLU_RS30895	0.37	+0.6
4,157,786	-		PFLU_RS30895	0.37	-0.1
4,157,786	-		PFLU_RS30895	0.37	+0.7
4,157,786	-		PFLU_RS30895	0.37	+0.3
4,157,807	+		PFLU_RS30895	0.44	-1.0
4,157,807	+		PFLU_RS30895	0.44	-0.5
4,157,807	+		PFLU_RS30895	0.44	+0.5
4,157,807	+		PFLU_RS30895	0.44	+0.4
4,157,808	-		PFLU_RS30895	0.45	-0.2
4,157,808	-		PFLU_RS30895	0.45	-2.2
4,157,808	-		PFLU_RS30895	0.45	+0.6
4,157,808	-		PFLU_RS30895	0.45	-0.1
4,157,808	-		PFLU_RS30895	0.45	-1.0
4,157,808	-		PFLU_RS30895	0.45	-1.4
4,157,808	-		PFLU_RS30895	0.45	-1.1
4,157,808	-		PFLU_RS30895	0.45	+0.6
4,157,808	-		PFLU_RS30895	0.45	+0.6
4,157,808	-		PFLU_RS30895	0.45	-1.3
4,157,808	-		PFLU_RS30895	0.45	+0.3
4,157,838	-		PFLU_RS30895	0.55	-0.4
4,157,849	+		PFLU_RS30895	0.58	-0.0
4,157,850	-		PFLU_RS30895	0.59	-1.5
4,157,850	-		PFLU_RS30895	0.59	-0.9
4,157,850	-		PFLU_RS30895	0.59	-1.8
4,157,854	-		PFLU_RS30895	0.60	+0.1
4,157,859	-		PFLU_RS30895	0.62	+0.8
4,157,859	-		PFLU_RS30895	0.62	-0.2
4,157,859	-		PFLU_RS30895	0.62	+0.2
4,157,872	-		PFLU_RS30895	0.66	+0.0
4,157,872	-		PFLU_RS30895	0.66	+0.6
4,157,872	-		PFLU_RS30895	0.66	+1.5
4,157,873	+		PFLU_RS30895	0.66	+1.1
4,157,873	+		PFLU_RS30895	0.66	+1.4
4,157,874	-		PFLU_RS30895	0.67	+0.4
4,157,874	-		PFLU_RS30895	0.67	-0.2
4,157,874	-		PFLU_RS30895	0.67	-2.3
4,157,874	-		PFLU_RS30895	0.67	-0.3
4,158,001	+				-0.5
4,158,002	-				+0.2
4,158,011	+				-2.3
4,158,012	-				+0.9
4,158,012	-				+0.7
4,158,012	-				+0.8
4,158,139	+				-1.6
4,158,139	+				+0.6
4,158,139	+				-0.1
4,158,140	-				+0.4
4,158,140	-				+0.5
4,158,140	-				+0.6
4,158,145	+				+0.1
4,158,145	+				+0.7
4,158,145	+				+1.7
4,158,145	+				-1.6
4,158,145	+				+2.7
4,158,146	-				+0.4
4,158,146	-				+0.0
4,158,146	-				-0.2
4,158,146	-				+0.7
4,158,146	-				-0.6
4,158,165	+				+1.7
4,158,188	+				-1.3
4,158,188	+				+0.5
4,158,188	+				-0.7
4,158,188	+				+1.0
4,158,189	-				-0.1
4,158,189	-				+0.0
4,158,189	-				+1.4
4,158,189	-				+0.4
4,158,189	-				-0.8
4,158,189	-				-0.9
4,158,189	-				+0.6
4,158,189	-				+0.8
4,158,189	-				-0.7
4,158,189	-				+0.4
4,158,189	-				-0.7
4,158,189	-				-0.9
4,158,189	-				-2.5
4,158,189	-				-1.0
4,158,192	+				-1.3
4,158,192	+				+0.4
4,158,192	+				+0.6
4,158,192	+				-0.6
4,158,193	-				+0.1
4,158,193	-				-1.9
4,158,193	-				+0.7
4,158,193	-				+0.9
4,158,193	-				+3.7
4,158,193	-				+0.1
4,158,193	-				+1.4
4,158,193	-				-0.0
4,158,193	-				-0.2
4,158,193	-				+2.0
4,158,211	-				+0.8
4,158,231	-				+0.9
4,158,231	-				+0.2
4,158,312	+				-0.8
4,158,313	-				+0.1
4,158,313	-				-0.4
4,158,315	+				+0.0
4,158,315	+				-0.9
4,158,316	-				-1.0
4,158,316	-				-0.2
4,158,382	-				-0.3
4,158,405	+				-2.0
4,158,405	+				+0.8
4,158,405	+				-0.7
4,158,405	+				-0.5
4,158,406	-				-1.9
4,158,406	-				-1.4
4,158,406	-				-1.9
4,158,406	-				+0.1
4,158,406	-				+1.8
4,158,406	-				-0.2
4,158,482	+				-2.6
4,158,482	+				+0.2
4,158,482	+				+0.8
4,158,482	+				+0.5
4,158,482	+				-0.7
4,158,482	+				+1.8
4,158,482	+				+0.1
4,158,482	+				+0.4
4,158,483	-				+2.2
4,158,483	-				-0.5
4,158,483	-				-0.0
4,158,483	-				+0.0
4,158,483	-				-0.4
4,158,502	-				-0.1
4,158,538	+				-1.9
4,158,538	+				+0.3
4,158,538	+				+0.0
4,158,539	-				+1.0
4,158,539	-				+0.7
4,158,539	-				+0.1
4,158,539	-				+0.8
4,158,539	-				-1.1
4,158,539	-				-2.4
4,158,539	-				+0.8
4,158,590	+				+0.8
4,158,590	+				-1.2
4,158,590	+				+0.0
4,158,590	+				-0.0
4,158,590	+				+0.3
4,158,590	+				+0.1
4,158,591	-				+0.3
4,158,591	-				+0.3
4,158,591	-				+0.8
4,158,591	-				-0.2
4,158,591	-				+0.3
4,158,640	+				+0.6
4,158,640	+				-0.2
4,158,640	+				+0.2
4,158,641	-				-1.3
4,158,651	+				+0.2
4,158,651	+				+0.1
4,158,651	+				-0.3
4,158,652	-				-2.1
4,158,652	-				+0.5
4,158,652	-				-0.4
4,158,673	+				-0.7
4,158,674	-				-0.2
4,158,674	-				+0.3
4,158,689	+				+0.7
4,158,689	+				+1.1
4,158,689	+				+0.5
4,158,689	+				+0.4
4,158,689	+				+0.5
4,158,689	+				+0.8
4,158,689	+				+0.6
4,158,689	+				-0.5
4,158,721	+				-0.6
4,158,722	-				+0.2
4,158,722	-				-0.6
4,158,751	+				-0.3
4,158,751	+				-0.0
4,158,752	-				+0.9
4,158,752	-				+0.6
4,158,752	-				-0.9
4,158,752	-				+0.8
4,158,871	+		PFLU_RS18330	0.20	+1.0
4,158,871	+		PFLU_RS18330	0.20	+0.1
4,158,871	+		PFLU_RS18330	0.20	+0.1
4,158,872	-		PFLU_RS18330	0.20	-0.1
4,158,872	-		PFLU_RS18330	0.20	-0.3
4,158,872	-		PFLU_RS18330	0.20	+0.2
4,158,872	-		PFLU_RS18330	0.20	+0.8
4,158,872	-		PFLU_RS18330	0.20	-0.8
4,158,872	-		PFLU_RS18330	0.20	+0.5
4,158,872	-		PFLU_RS18330	0.20	+0.0
4,158,872	-		PFLU_RS18330	0.20	+0.6
4,158,872	-		PFLU_RS18330	0.20	+0.3
4,158,872	-		PFLU_RS18330	0.20	+1.0
4,158,872	-		PFLU_RS18330	0.20	-0.5