Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS29895

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
6,647,683	+		PFLU_RS29890	0.19	+0.6
6,647,683	+		PFLU_RS29890	0.19	+0.0
6,647,683	+		PFLU_RS29890	0.19	-0.8
6,647,683	+		PFLU_RS29890	0.19	+0.4
6,647,684	-		PFLU_RS29890	0.19	-0.9
6,647,684	-		PFLU_RS29890	0.19	-2.5
6,647,684	-		PFLU_RS29890	0.19	+1.4
6,647,684	-		PFLU_RS29890	0.19	-0.1
6,647,684	-		PFLU_RS29890	0.19	+1.0
6,647,905	+		PFLU_RS29890	0.45	+0.5
6,647,905	+		PFLU_RS29890	0.45	+1.2
6,647,905	+		PFLU_RS29890	0.45	-0.0
6,647,905	+		PFLU_RS29890	0.45	-0.0
6,647,905	+		PFLU_RS29890	0.45	-0.8
6,647,905	+		PFLU_RS29890	0.45	-0.9
6,647,905	+		PFLU_RS29890	0.45	-0.2
6,647,906	-		PFLU_RS29890	0.45	+0.1
6,647,906	-		PFLU_RS29890	0.45	+0.1
6,647,906	-		PFLU_RS29890	0.45	+1.3
6,647,983	+		PFLU_RS29890	0.54	-0.4
6,647,983	+		PFLU_RS29890	0.54	+0.4
6,647,983	+		PFLU_RS29890	0.54	+0.4
6,647,983	+		PFLU_RS29890	0.54	+1.4
6,647,983	+		PFLU_RS29890	0.54	-1.4
6,647,984	-		PFLU_RS29890	0.54	+0.5
6,647,984	-		PFLU_RS29890	0.54	-1.8
6,647,984	-		PFLU_RS29890	0.54	-2.8
6,647,984	-		PFLU_RS29890	0.54	+1.2
6,647,984	-		PFLU_RS29890	0.54	+0.2
6,647,984	-		PFLU_RS29890	0.54	+1.0
6,648,103	+		PFLU_RS29890	0.68	-0.2
6,648,104	-		PFLU_RS29890	0.68	+0.8
6,648,104	-		PFLU_RS29890	0.68	+2.0
6,648,343	-				+0.6
6,648,343	-				-0.1
6,648,366	-				-0.1
6,648,366	-				-0.0
6,648,366	-				+0.1
6,648,366	-				-1.8
6,648,401	-				+0.6
6,648,420	+				+0.0
6,648,420	+				+1.0
6,648,420	+				+0.4
6,648,420	+				+0.6
6,648,420	+				+1.1
6,648,420	+				-0.5
6,648,420	+				-1.6
6,648,420	+				-0.5
6,648,421	-				-0.0
6,648,421	-				+0.9
6,648,421	-				-0.5
6,648,421	-				-0.1
6,648,431	+				-0.5
6,648,432	-				-0.6
6,648,435	+				-0.2
6,648,435	+				-0.3
6,648,435	+				-0.8
6,648,436	-				-0.7
6,648,436	-				+2.1
6,648,436	-				+0.2
6,648,437	+				-0.7
6,648,437	+				-0.5
6,648,440	+				-0.6
6,648,476	+				+0.9
6,648,477	-				-0.1
6,648,503	-				+0.3
6,648,519	+				-0.2
6,648,520	-				+0.0
6,648,520	-				+0.0
6,648,520	-				+0.3
6,648,615	+				-1.2
6,648,615	+				+0.8
6,648,615	+				-0.7
6,648,616	-				+0.9
6,648,616	-				-0.2
6,648,721	+				-1.1
6,648,772	+				+1.4
6,648,773	-				+0.3
6,648,795	+				+0.2
6,648,795	+				+0.4
6,648,795	+				+0.7
6,648,795	+				-0.6
6,648,796	-				+1.5
6,648,796	-				+0.7
6,648,796	-				-1.0
6,648,796	-				+0.6
6,648,796	-				+0.2
6,648,809	-				-0.9
6,648,819	+				-0.0
6,648,819	+				-1.3
6,648,819	+				-0.1
6,648,819	+				-0.5
6,648,834	+		PFLU_RS29895	0.10	+0.9
6,648,923	+		PFLU_RS29895	0.13	-0.6
6,648,923	+		PFLU_RS29895	0.13	-0.6
6,648,923	+		PFLU_RS29895	0.13	+2.6
6,648,923	+		PFLU_RS29895	0.13	+0.6
6,648,924	-		PFLU_RS29895	0.13	+1.0
6,648,924	-		PFLU_RS29895	0.13	-0.7
6,648,924	-		PFLU_RS29895	0.13	-0.4
6,648,955	-		PFLU_RS29895	0.14	+0.8
6,649,247	+		PFLU_RS29895	0.25	+2.0
6,649,247	+		PFLU_RS29895	0.25	-2.6
6,649,247	+		PFLU_RS29895	0.25	-0.7
6,649,247	+		PFLU_RS29895	0.25	-0.2
6,649,247	+		PFLU_RS29895	0.25	+0.3
6,649,247	+		PFLU_RS29895	0.25	+1.4
6,649,247	+		PFLU_RS29895	0.25	-1.0
6,649,247	+		PFLU_RS29895	0.25	-0.1
6,649,247	+		PFLU_RS29895	0.25	+0.8
6,649,248	-		PFLU_RS29895	0.25	+0.1
6,649,248	-		PFLU_RS29895	0.25	+0.2
6,649,248	-		PFLU_RS29895	0.25	-0.2
6,649,248	-		PFLU_RS29895	0.25	-0.3
6,649,248	-		PFLU_RS29895	0.25	+1.7
6,649,248	-		PFLU_RS29895	0.25	-0.2
6,649,248	-		PFLU_RS29895	0.25	-0.2
6,649,248	-		PFLU_RS29895	0.25	-0.7
6,649,260	+		PFLU_RS29895	0.25	+0.3
6,649,260	+		PFLU_RS29895	0.25	-0.5
6,649,260	+		PFLU_RS29895	0.25	+0.3
6,649,260	+		PFLU_RS29895	0.25	-0.0
6,649,260	+		PFLU_RS29895	0.25	+0.7
6,649,261	-		PFLU_RS29895	0.25	+0.5
6,649,261	-		PFLU_RS29895	0.25	-0.3
6,649,261	-		PFLU_RS29895	0.25	-0.0
6,649,261	-		PFLU_RS29895	0.25	-0.5
6,649,261	-		PFLU_RS29895	0.25	+0.1
6,649,261	-		PFLU_RS29895	0.25	-0.8
6,649,353	+		PFLU_RS29895	0.28	+0.1
6,649,354	-		PFLU_RS29895	0.28	+0.6
6,649,354	-		PFLU_RS29895	0.28	-0.5
6,649,366	+		PFLU_RS29895	0.29	-1.6
6,649,566	+		PFLU_RS29895	0.36	+0.4
6,649,567	-		PFLU_RS29895	0.36	-0.5
6,649,703	+		PFLU_RS29895	0.40	+1.5
6,649,703	+		PFLU_RS29895	0.40	+1.2
6,649,703	+		PFLU_RS29895	0.40	+0.4
6,649,703	+		PFLU_RS29895	0.40	-0.3
6,649,703	+		PFLU_RS29895	0.40	-0.8
6,649,704	-		PFLU_RS29895	0.40	+0.8
6,649,704	-		PFLU_RS29895	0.40	+0.2
6,649,761	-		PFLU_RS29895	0.42	-1.0
6,649,761	-		PFLU_RS29895	0.42	-0.6
6,649,849	+		PFLU_RS29895	0.45	+0.4
6,649,849	+		PFLU_RS29895	0.45	+0.5
6,649,850	-		PFLU_RS29895	0.45	-0.2
6,649,901	-		PFLU_RS29895	0.47	+0.4
6,649,956	+		PFLU_RS29895	0.49	+0.8
6,649,957	-		PFLU_RS29895	0.49	+0.5
6,650,002	+		PFLU_RS29895	0.51	+1.3
6,650,002	+		PFLU_RS29895	0.51	-0.1
6,650,002	+		PFLU_RS29895	0.51	+0.6
6,650,003	-		PFLU_RS29895	0.51	-1.4
6,650,003	-		PFLU_RS29895	0.51	-1.0
6,650,003	-		PFLU_RS29895	0.51	+0.7
6,650,003	-		PFLU_RS29895	0.51	-0.2
6,650,003	-		PFLU_RS29895	0.51	-0.4
6,650,012	+		PFLU_RS29895	0.51	+0.3
6,650,013	-		PFLU_RS29895	0.51	-0.2
6,650,013	-		PFLU_RS29895	0.51	-0.4
6,650,013	-		PFLU_RS29895	0.51	-1.6
6,650,151	+		PFLU_RS29895	0.56	+0.0
6,650,367	+		PFLU_RS29895	0.63	-1.1
6,650,367	+		PFLU_RS29895	0.63	+0.2
6,650,367	+		PFLU_RS29895	0.63	+0.3
6,650,367	+		PFLU_RS29895	0.63	+0.4
6,650,368	-		PFLU_RS29895	0.63	+0.1
6,650,368	-		PFLU_RS29895	0.63	+1.0
6,650,368	-		PFLU_RS29895	0.63	-1.9
6,650,472	+		PFLU_RS29895	0.67	+0.6
6,650,472	+		PFLU_RS29895	0.67	-0.0
6,650,472	+		PFLU_RS29895	0.67	+0.2
6,650,472	+		PFLU_RS29895	0.67	+0.5
6,650,472	+		PFLU_RS29895	0.67	-1.1
6,650,473	-		PFLU_RS29895	0.67	+0.5
6,650,473	-		PFLU_RS29895	0.67	+0.8
6,650,473	-		PFLU_RS29895	0.67	+0.9
6,650,473	-		PFLU_RS29895	0.67	+0.7
6,650,473	-		PFLU_RS29895	0.67	+1.0
6,650,473	-		PFLU_RS29895	0.67	+0.2
6,650,473	-		PFLU_RS29895	0.67	-0.4
6,650,473	-		PFLU_RS29895	0.67	+0.6
6,650,596	+		PFLU_RS29895	0.71	+0.0
6,650,596	+		PFLU_RS29895	0.71	+0.8
6,650,871	-		PFLU_RS29895	0.81	-0.1
6,650,913	+		PFLU_RS29895	0.82	+0.3
6,650,913	+		PFLU_RS29895	0.82	+0.1
6,650,913	+		PFLU_RS29895	0.82	-0.2
6,650,913	+		PFLU_RS29895	0.82	+1.4
6,650,914	-		PFLU_RS29895	0.82	-1.3
6,650,914	-		PFLU_RS29895	0.82	+0.8
6,650,914	-		PFLU_RS29895	0.82	+0.3
6,650,914	-		PFLU_RS29895	0.82	-0.8
6,650,914	-		PFLU_RS29895	0.82	+0.1
6,650,914	-		PFLU_RS29895	0.82	+0.0
6,650,914	-		PFLU_RS29895	0.82	+1.7
6,650,914	-		PFLU_RS29895	0.82	-0.4
6,650,976	+		PFLU_RS29895	0.85	-0.1
6,651,037	+		PFLU_RS29895	0.87	-1.3
6,651,037	+		PFLU_RS29895	0.87	+0.1
6,651,038	-		PFLU_RS29895	0.87	+0.9
6,651,234	+				+1.8
6,651,234	+				-1.1
6,651,234	+				+0.1
6,651,234	+				+0.7
6,651,234	+				-1.0
6,651,235	-				+0.3
6,651,235	-				-1.4
6,651,235	-				+0.1
6,651,316	-				+0.4
6,651,316	-				+0.8
6,651,316	-				+0.1
6,651,316	-				-1.8
6,651,316	-				+2.5
6,651,354	+				-0.2
6,651,354	+				-1.0
6,651,354	+				-0.0
6,651,355	-				-1.3
6,651,418	+				+0.4
6,651,418	+				+0.2
6,651,418	+				-0.5
6,651,418	+				+1.3
6,651,419	-				+0.2
6,651,419	-				+0.6
6,651,419	-				+1.1
6,651,419	-				+0.1
6,651,419	-				+0.4
6,651,419	-				-0.6
6,651,419	-				+0.1
6,651,431	+				+0.0
6,651,431	+				-0.6
6,651,431	+				-0.9
6,651,431	+				-0.1
6,651,431	+				+0.5
6,651,431	+				-1.6
6,651,431	+				+0.8
6,651,431	+				+0.0
6,651,431	+				+1.0
6,651,431	+				-0.2
6,651,431	+				-2.9
6,651,432	-				-1.2
6,651,432	-				-0.1
6,651,432	-				-0.2
6,651,432	-				-1.1
6,651,432	-				-0.5
6,651,432	-				+1.0
6,651,432	-				-0.2
6,651,432	-				+0.1
6,651,432	-				+0.3
6,651,432	-				-1.1
6,651,432	-				-1.1
6,651,432	-				+0.6
6,651,432	-				-0.0
6,651,432	-				-0.8
6,651,432	-				+0.0
6,651,432	-				+0.8
6,651,432	-				+1.0
6,651,432	-				-2.8
6,651,432	-				+0.0
6,651,432	-				-0.6
6,651,433	+				+0.5
6,651,433	+				+0.8
6,651,433	+				-0.3
6,651,433	+				-1.2
6,651,434	-				+0.0
6,651,434	-				-1.1
6,651,434	-				-0.9
6,651,434	-				+2.0
6,651,434	-				-0.2
6,651,434	-				-1.5
6,651,463	+				+0.1
6,651,463	+				-0.8
6,651,463	+				-0.2
6,651,463	+				+1.4
6,651,463	+				-0.3
6,651,463	+				+0.8
6,651,463	+				-0.6
6,651,464	-				-0.9
6,651,464	-				+1.5
6,651,464	-				-0.2
6,651,464	-				-1.5
6,651,464	-				-0.2
6,651,464	-				+0.1
6,651,464	-				+0.1
6,651,464	-				-0.2
6,651,464	-				+2.7
6,651,464	-				-0.5
6,651,464	-				+0.0
6,651,464	-				-0.3
6,651,464	-				+1.8
6,651,464	-				+1.1
6,651,464	-				+0.3
6,651,464	-				+0.4
6,651,464	-				+0.1
6,651,494	+				-2.8
6,651,494	+				+0.3
6,651,494	+				-1.2
6,651,494	+				-0.9
6,651,494	+				-0.4
6,651,495	-				+0.4
6,651,495	-				-0.1
6,651,502	-				+0.6
6,651,502	-				+1.0
6,651,628	+				+0.6
6,651,628	+				+0.3
6,651,628	+				+1.3
6,651,629	-				-0.0
6,651,629	-				-0.3
6,651,629	-				-0.3
6,651,629	-				+0.7
6,651,654	+				-0.7
6,651,654	+				-1.0
6,651,654	+				-0.4
6,651,654	+				-0.7
6,651,654	+				+0.9
6,651,654	+				+0.7
6,651,654	+				+0.4
6,651,654	+				+0.3
6,651,655	-				-0.3
6,651,655	-				-0.4
6,651,655	-				-0.9
6,651,655	-				+0.6
6,651,655	-				-0.6
6,651,655	-				+0.7
6,651,655	-				+0.1
6,652,106	+		PFLU_RS29900	0.20	-2.0
6,652,191	+		PFLU_RS29900	0.24	+0.4
6,652,191	+		PFLU_RS29900	0.24	+1.1
6,652,191	+		PFLU_RS29900	0.24	-1.5
6,652,191	+		PFLU_RS29900	0.24	-0.2
6,652,191	+		PFLU_RS29900	0.24	-2.2
6,652,191	+		PFLU_RS29900	0.24	-0.4
6,652,192	-		PFLU_RS29900	0.24	-0.3
6,652,192	-		PFLU_RS29900	0.24	-0.6
6,652,192	-		PFLU_RS29900	0.24	-0.4
6,652,192	-		PFLU_RS29900	0.24	-1.6
6,652,200	+		PFLU_RS29900	0.24	-0.5
6,652,201	-		PFLU_RS29900	0.24	+2.0
6,652,299	+		PFLU_RS29900	0.29	+0.4
6,652,300	-		PFLU_RS29900	0.29	+2.4
6,652,360	-		PFLU_RS29900	0.32	-0.4
6,652,360	-		PFLU_RS29900	0.32	-2.0
6,652,360	-		PFLU_RS29900	0.32	-1.4
6,652,360	-		PFLU_RS29900	0.32	-1.5