Experiment: succinate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS25410 and PFLU_RS25415 are separated by 1 nucleotides PFLU_RS25415 and PFLU_RS25420 are separated by 26 nucleotides
PFLU_RS25410: PFLU_RS25410 - D-aminoacylase, at 5,672,299 to 5,673,762
_RS25410
PFLU_RS25415: PFLU_RS25415 - MurR/RpiR family transcriptional regulator, at 5,673,764 to 5,674,624
_RS25415
PFLU_RS25420: PFLU_RS25420 - 2-keto-3-deoxygluconate permease, at 5,674,651 to 5,676,000
_RS25420
Position (kb) 5673
5674
5675 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5672.860 kb on - strand, within PFLU_RS25410 at 5672.868 kb on + strand, within PFLU_RS25410 at 5672.869 kb on - strand, within PFLU_RS25410 at 5672.921 kb on + strand, within PFLU_RS25410 at 5672.921 kb on + strand, within PFLU_RS25410 at 5672.922 kb on - strand, within PFLU_RS25410 at 5672.991 kb on + strand, within PFLU_RS25410 at 5673.125 kb on + strand, within PFLU_RS25410 at 5673.125 kb on + strand, within PFLU_RS25410 at 5673.125 kb on + strand, within PFLU_RS25410 at 5673.125 kb on + strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.126 kb on - strand, within PFLU_RS25410 at 5673.200 kb on + strand, within PFLU_RS25410 at 5673.201 kb on - strand, within PFLU_RS25410 at 5673.377 kb on - strand, within PFLU_RS25410 at 5673.701 kb on + strand at 5673.702 kb on - strand at 5673.702 kb on - strand at 5673.742 kb on + strand at 5673.743 kb on - strand at 5673.755 kb on + strand at 5673.755 kb on + strand at 5673.755 kb on + strand at 5673.755 kb on + strand at 5673.756 kb on - strand at 5673.756 kb on - strand at 5673.756 kb on - strand at 5673.756 kb on - strand at 5673.927 kb on + strand, within PFLU_RS25415 at 5673.927 kb on + strand, within PFLU_RS25415 at 5673.931 kb on + strand, within PFLU_RS25415 at 5673.931 kb on + strand, within PFLU_RS25415 at 5673.931 kb on + strand, within PFLU_RS25415 at 5673.932 kb on - strand, within PFLU_RS25415 at 5673.932 kb on - strand, within PFLU_RS25415 at 5673.932 kb on - strand, within PFLU_RS25415 at 5673.932 kb on - strand, within PFLU_RS25415 at 5674.026 kb on + strand, within PFLU_RS25415 at 5674.026 kb on + strand, within PFLU_RS25415 at 5674.027 kb on - strand, within PFLU_RS25415 at 5674.027 kb on - strand, within PFLU_RS25415 at 5674.027 kb on - strand, within PFLU_RS25415 at 5674.027 kb on - strand, within PFLU_RS25415 at 5674.185 kb on - strand, within PFLU_RS25415 at 5674.444 kb on + strand, within PFLU_RS25415 at 5674.444 kb on + strand, within PFLU_RS25415 at 5674.444 kb on + strand, within PFLU_RS25415 at 5674.444 kb on + strand, within PFLU_RS25415 at 5674.612 kb on - strand at 5674.612 kb on - strand at 5674.638 kb on + strand at 5674.639 kb on - strand at 5674.654 kb on + strand at 5674.654 kb on + strand at 5674.654 kb on + strand at 5674.654 kb on + strand at 5674.654 kb on + strand at 5674.654 kb on + strand at 5674.654 kb on + strand at 5674.655 kb on - strand at 5674.673 kb on + strand at 5674.673 kb on + strand at 5674.674 kb on - strand at 5674.749 kb on + strand at 5674.750 kb on - strand at 5674.757 kb on + strand at 5674.757 kb on + strand at 5674.758 kb on - strand at 5674.758 kb on - strand at 5674.876 kb on + strand, within PFLU_RS25420 at 5674.876 kb on + strand, within PFLU_RS25420 at 5674.876 kb on + strand, within PFLU_RS25420 at 5674.876 kb on + strand, within PFLU_RS25420 at 5674.876 kb on + strand, within PFLU_RS25420 at 5674.876 kb on + strand, within PFLU_RS25420 at 5674.876 kb on + strand, within PFLU_RS25420 at 5674.876 kb on + strand, within PFLU_RS25420 at 5674.877 kb on - strand, within PFLU_RS25420 at 5674.877 kb on - strand, within PFLU_RS25420 at 5674.877 kb on - strand, within PFLU_RS25420 at 5674.877 kb on - strand, within PFLU_RS25420 at 5674.877 kb on - strand, within PFLU_RS25420 at 5675.136 kb on + strand, within PFLU_RS25420 at 5675.136 kb on + strand, within PFLU_RS25420 at 5675.136 kb on + strand, within PFLU_RS25420 at 5675.305 kb on - strand, within PFLU_RS25420 at 5675.322 kb on + strand, within PFLU_RS25420 at 5675.323 kb on - strand, within PFLU_RS25420 at 5675.402 kb on + strand, within PFLU_RS25420 at 5675.403 kb on - strand, within PFLU_RS25420 at 5675.403 kb on - strand, within PFLU_RS25420 at 5675.450 kb on + strand, within PFLU_RS25420 at 5675.450 kb on + strand, within PFLU_RS25420 at 5675.450 kb on + strand, within PFLU_RS25420 at 5675.450 kb on + strand, within PFLU_RS25420 at 5675.451 kb on - strand, within PFLU_RS25420 at 5675.451 kb on - strand, within PFLU_RS25420 at 5675.478 kb on + strand, within PFLU_RS25420 at 5675.478 kb on + strand, within PFLU_RS25420 at 5675.478 kb on + strand, within PFLU_RS25420 at 5675.478 kb on + strand, within PFLU_RS25420 at 5675.478 kb on + strand, within PFLU_RS25420 at 5675.478 kb on + strand, within PFLU_RS25420 at 5675.478 kb on + strand, within PFLU_RS25420 at 5675.478 kb on + strand, within PFLU_RS25420 at 5675.478 kb on + strand, within PFLU_RS25420 at 5675.479 kb on - strand, within PFLU_RS25420 at 5675.479 kb on - strand, within PFLU_RS25420 at 5675.479 kb on - strand, within PFLU_RS25420 at 5675.479 kb on - strand, within PFLU_RS25420 at 5675.479 kb on - strand, within PFLU_RS25420 at 5675.479 kb on - strand, within PFLU_RS25420 at 5675.479 kb on - strand, within PFLU_RS25420 at 5675.480 kb on + strand, within PFLU_RS25420 at 5675.480 kb on + strand, within PFLU_RS25420 at 5675.480 kb on + strand, within PFLU_RS25420 at 5675.480 kb on + strand, within PFLU_RS25420 at 5675.480 kb on + strand, within PFLU_RS25420 at 5675.480 kb on + strand, within PFLU_RS25420 at 5675.480 kb on + strand, within PFLU_RS25420 at 5675.480 kb on + strand, within PFLU_RS25420 at 5675.480 kb on + strand, within PFLU_RS25420 at 5675.480 kb on + strand, within PFLU_RS25420 at 5675.480 kb on + strand, within PFLU_RS25420 at 5675.480 kb on + strand, within PFLU_RS25420 at 5675.481 kb on - strand, within PFLU_RS25420 at 5675.481 kb on - strand, within PFLU_RS25420 at 5675.481 kb on - strand, within PFLU_RS25420 at 5675.481 kb on - strand, within PFLU_RS25420 at 5675.481 kb on - strand, within PFLU_RS25420 at 5675.481 kb on - strand, within PFLU_RS25420 at 5675.481 kb on - strand, within PFLU_RS25420 at 5675.481 kb on - strand, within PFLU_RS25420 at 5675.481 kb on - strand, within PFLU_RS25420 at 5675.481 kb on - strand, within PFLU_RS25420 at 5675.481 kb on - strand, within PFLU_RS25420 at 5675.481 kb on - strand, within PFLU_RS25420 at 5675.579 kb on - strand, within PFLU_RS25420 at 5675.602 kb on - strand, within PFLU_RS25420
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C); with MOPS remove 5,672,860 - PFLU_RS25410 0.38 +0.1 5,672,868 + PFLU_RS25410 0.39 +0.9 5,672,869 - PFLU_RS25410 0.39 -0.4 5,672,921 + PFLU_RS25410 0.42 +0.5 5,672,921 + PFLU_RS25410 0.42 -0.5 5,672,922 - PFLU_RS25410 0.43 +0.5 5,672,991 + PFLU_RS25410 0.47 -0.7 5,673,125 + PFLU_RS25410 0.56 +0.2 5,673,125 + PFLU_RS25410 0.56 -0.1 5,673,125 + PFLU_RS25410 0.56 -1.4 5,673,125 + PFLU_RS25410 0.56 +1.3 5,673,126 - PFLU_RS25410 0.56 -0.4 5,673,126 - PFLU_RS25410 0.56 -1.5 5,673,126 - PFLU_RS25410 0.56 -1.7 5,673,126 - PFLU_RS25410 0.56 -0.2 5,673,126 - PFLU_RS25410 0.56 -0.1 5,673,126 - PFLU_RS25410 0.56 -0.8 5,673,200 + PFLU_RS25410 0.62 +0.1 5,673,201 - PFLU_RS25410 0.62 +1.0 5,673,377 - PFLU_RS25410 0.74 +0.3 5,673,701 + -0.1 5,673,702 - +2.1 5,673,702 - +0.1 5,673,742 + +0.7 5,673,743 - +0.2 5,673,755 + -1.0 5,673,755 + -0.5 5,673,755 + +0.7 5,673,755 + -0.0 5,673,756 - +0.4 5,673,756 - +0.5 5,673,756 - -0.4 5,673,756 - -0.7 5,673,927 + PFLU_RS25415 0.19 +2.5 5,673,927 + PFLU_RS25415 0.19 -0.4 5,673,931 + PFLU_RS25415 0.19 -1.1 5,673,931 + PFLU_RS25415 0.19 +2.1 5,673,931 + PFLU_RS25415 0.19 +0.8 5,673,932 - PFLU_RS25415 0.20 +1.0 5,673,932 - PFLU_RS25415 0.20 -0.7 5,673,932 - PFLU_RS25415 0.20 -0.5 5,673,932 - PFLU_RS25415 0.20 +0.3 5,674,026 + PFLU_RS25415 0.30 +0.3 5,674,026 + PFLU_RS25415 0.30 +0.2 5,674,027 - PFLU_RS25415 0.31 -1.3 5,674,027 - PFLU_RS25415 0.31 -0.9 5,674,027 - PFLU_RS25415 0.31 +0.9 5,674,027 - PFLU_RS25415 0.31 +0.2 5,674,185 - PFLU_RS25415 0.49 +0.7 5,674,444 + PFLU_RS25415 0.79 +1.1 5,674,444 + PFLU_RS25415 0.79 +0.5 5,674,444 + PFLU_RS25415 0.79 -0.4 5,674,444 + PFLU_RS25415 0.79 -2.1 5,674,612 - -0.1 5,674,612 - +0.4 5,674,638 + -0.2 5,674,639 - +1.3 5,674,654 + -0.8 5,674,654 + +0.1 5,674,654 + +0.3 5,674,654 + +0.1 5,674,654 + -0.6 5,674,654 + +0.7 5,674,654 + +1.3 5,674,655 - -0.2 5,674,673 + -0.6 5,674,673 + -1.1 5,674,674 - +0.1 5,674,749 + +0.4 5,674,750 - -0.2 5,674,757 + +0.3 5,674,757 + +0.1 5,674,758 - +0.2 5,674,758 - +0.1 5,674,876 + PFLU_RS25420 0.17 +0.2 5,674,876 + PFLU_RS25420 0.17 +3.7 5,674,876 + PFLU_RS25420 0.17 +0.0 5,674,876 + PFLU_RS25420 0.17 -0.7 5,674,876 + PFLU_RS25420 0.17 +0.1 5,674,876 + PFLU_RS25420 0.17 +0.1 5,674,876 + PFLU_RS25420 0.17 -0.2 5,674,876 + PFLU_RS25420 0.17 +0.0 5,674,877 - PFLU_RS25420 0.17 +0.4 5,674,877 - PFLU_RS25420 0.17 -0.8 5,674,877 - PFLU_RS25420 0.17 -0.2 5,674,877 - PFLU_RS25420 0.17 +1.3 5,674,877 - PFLU_RS25420 0.17 -0.2 5,675,136 + PFLU_RS25420 0.36 -0.4 5,675,136 + PFLU_RS25420 0.36 -0.1 5,675,136 + PFLU_RS25420 0.36 +0.5 5,675,305 - PFLU_RS25420 0.48 -0.0 5,675,322 + PFLU_RS25420 0.50 +0.4 5,675,323 - PFLU_RS25420 0.50 +0.1 5,675,402 + PFLU_RS25420 0.56 -1.3 5,675,403 - PFLU_RS25420 0.56 -0.9 5,675,403 - PFLU_RS25420 0.56 -0.1 5,675,450 + PFLU_RS25420 0.59 +0.4 5,675,450 + PFLU_RS25420 0.59 +1.2 5,675,450 + PFLU_RS25420 0.59 +1.2 5,675,450 + PFLU_RS25420 0.59 -0.6 5,675,451 - PFLU_RS25420 0.59 +0.1 5,675,451 - PFLU_RS25420 0.59 +0.8 5,675,478 + PFLU_RS25420 0.61 +1.4 5,675,478 + PFLU_RS25420 0.61 -0.8 5,675,478 + PFLU_RS25420 0.61 -0.9 5,675,478 + PFLU_RS25420 0.61 +0.2 5,675,478 + PFLU_RS25420 0.61 +0.5 5,675,478 + PFLU_RS25420 0.61 +0.9 5,675,478 + PFLU_RS25420 0.61 +0.2 5,675,478 + PFLU_RS25420 0.61 +0.4 5,675,478 + PFLU_RS25420 0.61 +0.1 5,675,479 - PFLU_RS25420 0.61 -0.4 5,675,479 - PFLU_RS25420 0.61 +0.7 5,675,479 - PFLU_RS25420 0.61 -0.5 5,675,479 - PFLU_RS25420 0.61 -0.9 5,675,479 - PFLU_RS25420 0.61 -0.2 5,675,479 - PFLU_RS25420 0.61 +0.2 5,675,479 - PFLU_RS25420 0.61 +2.4 5,675,480 + PFLU_RS25420 0.61 +0.4 5,675,480 + PFLU_RS25420 0.61 -0.2 5,675,480 + PFLU_RS25420 0.61 -0.8 5,675,480 + PFLU_RS25420 0.61 +0.1 5,675,480 + PFLU_RS25420 0.61 -0.5 5,675,480 + PFLU_RS25420 0.61 -0.9 5,675,480 + PFLU_RS25420 0.61 -0.0 5,675,480 + PFLU_RS25420 0.61 -0.8 5,675,480 + PFLU_RS25420 0.61 -0.2 5,675,480 + PFLU_RS25420 0.61 -0.0 5,675,480 + PFLU_RS25420 0.61 +1.0 5,675,480 + PFLU_RS25420 0.61 +0.6 5,675,481 - PFLU_RS25420 0.61 +0.2 5,675,481 - PFLU_RS25420 0.61 +1.4 5,675,481 - PFLU_RS25420 0.61 +1.3 5,675,481 - PFLU_RS25420 0.61 +0.2 5,675,481 - PFLU_RS25420 0.61 +0.0 5,675,481 - PFLU_RS25420 0.61 +0.1 5,675,481 - PFLU_RS25420 0.61 +0.3 5,675,481 - PFLU_RS25420 0.61 -1.1 5,675,481 - PFLU_RS25420 0.61 +0.4 5,675,481 - PFLU_RS25420 0.61 +0.2 5,675,481 - PFLU_RS25420 0.61 -0.6 5,675,481 - PFLU_RS25420 0.61 +1.8 5,675,579 - PFLU_RS25420 0.69 +1.6 5,675,602 - PFLU_RS25420 0.70 -0.2
Or see this region's nucleotide sequence