Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS24245

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
5,427,400	+		PFLU_RS24240	0.35	-0.7
5,427,428	+		PFLU_RS24240	0.37	-1.2
5,427,449	+		PFLU_RS24240	0.39	-0.8
5,427,450	-		PFLU_RS24240	0.39	+0.7
5,427,626	+		PFLU_RS24240	0.52	+1.1
5,427,626	+		PFLU_RS24240	0.52	-0.3
5,427,627	-		PFLU_RS24240	0.52	-1.4
5,427,746	+		PFLU_RS24240	0.61	+0.2
5,427,746	+		PFLU_RS24240	0.61	-0.0
5,427,746	+		PFLU_RS24240	0.61	+1.6
5,427,746	+		PFLU_RS24240	0.61	-1.4
5,427,746	+		PFLU_RS24240	0.61	+0.1
5,427,746	+		PFLU_RS24240	0.61	+0.9
5,427,746	+		PFLU_RS24240	0.61	+0.2
5,427,746	+		PFLU_RS24240	0.61	-2.8
5,427,746	+		PFLU_RS24240	0.61	+0.6
5,427,746	+		PFLU_RS24240	0.61	+0.6
5,427,746	+		PFLU_RS24240	0.61	+0.3
5,427,746	+		PFLU_RS24240	0.61	-0.3
5,427,746	+		PFLU_RS24240	0.61	+1.5
5,427,746	+		PFLU_RS24240	0.61	+0.3
5,427,747	-		PFLU_RS24240	0.61	-0.2
5,427,747	-		PFLU_RS24240	0.61	+0.6
5,427,747	-		PFLU_RS24240	0.61	+0.7
5,427,747	-		PFLU_RS24240	0.61	-1.2
5,427,747	-		PFLU_RS24240	0.61	-0.5
5,427,747	-		PFLU_RS24240	0.61	-0.3
5,427,747	-		PFLU_RS24240	0.61	+0.6
5,427,747	-		PFLU_RS24240	0.61	-1.4
5,427,747	-		PFLU_RS24240	0.61	+0.3
5,427,747	-		PFLU_RS24240	0.61	-0.8
5,427,747	-		PFLU_RS24240	0.61	-0.8
5,427,747	-		PFLU_RS24240	0.61	-0.1
5,427,747	-		PFLU_RS24240	0.61	-0.1
5,427,747	-		PFLU_RS24240	0.61	-1.5
5,427,747	-		PFLU_RS24240	0.61	-1.7
5,427,810	-		PFLU_RS24240	0.66	-1.6
5,427,861	+		PFLU_RS24240	0.70	-0.8
5,427,863	+		PFLU_RS24240	0.70	+0.2
5,427,863	+		PFLU_RS24240	0.70	+0.0
5,427,863	+		PFLU_RS24240	0.70	-0.0
5,427,863	+		PFLU_RS24240	0.70	+0.5
5,427,863	+		PFLU_RS24240	0.70	-0.0
5,427,864	-		PFLU_RS24240	0.70	+1.0
5,427,864	-		PFLU_RS24240	0.70	+0.5
5,427,864	-		PFLU_RS24240	0.70	-0.6
5,427,864	-		PFLU_RS24240	0.70	+0.1
5,427,864	-		PFLU_RS24240	0.70	+0.9
5,427,864	-		PFLU_RS24240	0.70	-1.5
5,427,897	-		PFLU_RS24240	0.73	-0.1
5,428,024	+		PFLU_RS24240	0.82	+0.5
5,428,024	+		PFLU_RS24240	0.82	-1.6
5,428,024	+		PFLU_RS24240	0.82	+0.8
5,428,024	+		PFLU_RS24240	0.82	-0.5
5,428,024	+		PFLU_RS24240	0.82	-0.4
5,428,025	-		PFLU_RS24240	0.82	-1.7
5,428,025	-		PFLU_RS24240	0.82	-2.2
5,428,025	-		PFLU_RS24240	0.82	-0.1
5,428,025	-		PFLU_RS24240	0.82	+0.2
5,428,025	-		PFLU_RS24240	0.82	-0.2
5,428,025	-		PFLU_RS24240	0.82	-0.2
5,428,025	-		PFLU_RS24240	0.82	-1.2
5,428,025	-		PFLU_RS24240	0.82	-1.5
5,428,025	-		PFLU_RS24240	0.82	+1.3
5,428,110	-		PFLU_RS24240	0.89	-0.2
5,428,110	-		PFLU_RS24240	0.89	-2.9
5,428,127	+		PFLU_RS24240	0.90	+0.8
5,428,128	-				+0.1
5,428,135	+				+0.2
5,428,229	+				+0.1
5,428,230	-				-1.7
5,428,307	+				-0.7
5,428,373	+				-1.3
5,428,373	+				+1.0
5,428,373	+				-0.8
5,428,374	-				-0.6
5,428,374	-				-0.9
5,428,374	-				-1.0
5,428,381	+		PFLU_RS24245	0.12	-0.8
5,428,381	+		PFLU_RS24245	0.12	+1.6
5,428,381	+		PFLU_RS24245	0.12	+0.3
5,428,382	-		PFLU_RS24245	0.12	+0.4
5,428,382	-		PFLU_RS24245	0.12	-0.2
5,428,382	-		PFLU_RS24245	0.12	-2.8
5,428,382	-		PFLU_RS24245	0.12	-0.5
5,428,382	-		PFLU_RS24245	0.12	-1.6
5,428,403	+		PFLU_RS24245	0.18	-0.2
5,428,404	-		PFLU_RS24245	0.18	+1.5
5,428,442	+		PFLU_RS24245	0.29	+1.0
5,428,442	+		PFLU_RS24245	0.29	+0.6
5,428,442	+		PFLU_RS24245	0.29	+0.4
5,428,443	-		PFLU_RS24245	0.29	+1.1
5,428,443	-		PFLU_RS24245	0.29	+1.1
5,428,458	+		PFLU_RS24245	0.33	+0.1
5,428,459	-		PFLU_RS24245	0.33	-0.1
5,428,459	-		PFLU_RS24245	0.33	-0.7
5,428,579	+		PFLU_RS24245	0.67	+0.4
5,428,579	+		PFLU_RS24245	0.67	-0.1
5,428,580	-		PFLU_RS24245	0.67	-1.0
5,428,609	+		PFLU_RS24245	0.75	+0.8
5,428,627	-		PFLU_RS24245	0.80	-0.2
5,428,658	+		PFLU_RS24245	0.89	-0.5
5,428,658	+		PFLU_RS24245	0.89	-1.0
5,428,658	+		PFLU_RS24245	0.89	+0.3
5,428,658	+		PFLU_RS24245	0.89	-0.1
5,428,659	-		PFLU_RS24245	0.89	-0.4
5,428,659	-		PFLU_RS24245	0.89	-0.8
5,428,659	-		PFLU_RS24245	0.89	+0.1
5,428,659	-		PFLU_RS24245	0.89	-1.4
5,428,659	-		PFLU_RS24245	0.89	-1.6
5,428,659	-		PFLU_RS24245	0.89	+2.4
5,428,663	+				-0.8
5,428,663	+				-0.1
5,428,663	+				-1.0
5,428,663	+				-2.0
5,428,664	-				+1.2
5,428,664	-				-0.2
5,428,664	-				+0.2
5,428,756	+				-0.6
5,428,757	-				-0.4
5,428,788	+				+0.4
5,428,788	+				+1.1
5,428,798	+				-0.0
5,428,799	-				-0.4
5,428,810	-				+1.0
5,428,872	+				+0.1
5,428,872	+				+0.4
5,428,873	-				+1.4
5,428,873	-				+0.6
5,428,873	-				+0.6
5,428,873	-				-0.0
5,428,873	-				-0.3
5,428,880	-				-0.3
5,428,905	+				+0.9
5,428,906	-				-0.4
5,428,919	+				+0.8
5,428,919	+				-0.5
5,428,919	+				-0.5
5,428,920	-				-0.9
5,428,920	-				+1.1
5,428,920	-				+0.0
5,428,927	+				-0.1
5,429,012	+		PFLU_RS24250	0.23	+2.5
5,429,012	+		PFLU_RS24250	0.23	+1.7
5,429,018	+		PFLU_RS24250	0.25	+1.3
5,429,019	-		PFLU_RS24250	0.25	-0.9
5,429,019	-		PFLU_RS24250	0.25	-0.2
5,429,054	+		PFLU_RS24250	0.35	-0.1
5,429,054	+		PFLU_RS24250	0.35	-1.3
5,429,054	+		PFLU_RS24250	0.35	+0.0
5,429,054	+		PFLU_RS24250	0.35	+0.9
5,429,054	+		PFLU_RS24250	0.35	-1.5
5,429,054	+		PFLU_RS24250	0.35	-0.1
5,429,054	+		PFLU_RS24250	0.35	+0.8
5,429,133	-		PFLU_RS24250	0.56	+1.0
5,429,133	-		PFLU_RS24250	0.56	+1.1
5,429,133	-		PFLU_RS24250	0.56	+0.2
5,429,133	-		PFLU_RS24250	0.56	+0.6
5,429,204	+		PFLU_RS24250	0.75	+2.3
5,429,204	+		PFLU_RS24250	0.75	+0.2
5,429,205	-		PFLU_RS24250	0.75	+1.2
5,429,205	-		PFLU_RS24250	0.75	+0.6
5,429,324	+				+0.0
5,429,324	+				-1.0
5,429,360	+				+0.2
5,429,360	+				+1.0
5,429,361	-				+0.1
5,429,395	-				-0.8
5,429,395	-				-2.4
5,429,395	-				+0.5
5,429,398	+				-0.5
5,429,398	+				-0.6
5,429,399	-				-1.6
5,429,399	-				-1.2
5,429,399	-				-0.8
5,429,399	-				+0.1
5,429,419	-				-0.2
5,429,419	-				-1.2
5,429,419	-				+0.5
5,429,433	+				+1.3
5,429,433	+				-1.0
5,429,433	+				-0.4
5,429,433	+				-0.0
5,429,433	+				+0.1
5,429,433	+				-0.3
5,429,433	+				+1.0
5,429,433	+				+1.4
5,429,433	+				-0.4
5,429,433	+				-2.4
5,429,433	+				+2.1
5,429,433	+				-0.5
5,429,433	+				+0.9
5,429,433	+				-0.7
5,429,434	-				-0.5
5,429,434	-				-1.2
5,429,434	-				-1.0
5,429,434	-				-1.0
5,429,434	-				-0.0
5,429,434	-				+0.3
5,429,434	-				-0.8
5,429,434	-				-1.8
5,429,434	-				+1.2
5,429,434	-				+0.5
5,429,436	+				-2.9
5,429,436	+				+0.4
5,429,436	+				+0.6
5,429,436	+				+0.3
5,429,437	-				+0.4
5,429,437	-				+1.0
5,429,437	-				+0.9
5,429,437	-				-0.0
5,429,437	-				+1.6
5,429,437	-				+0.5
5,429,437	-				-0.3
5,429,437	-				+0.0
5,429,437	-				+0.4
5,429,437	-				+0.4
5,429,437	-				-0.2