Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23380

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
5,254,535	+		PFLU_RS31055	0.81	-1.1
5,254,535	+		PFLU_RS31055	0.81	-2.3
5,254,536	-		PFLU_RS31055	0.81	-0.4
5,254,536	-		PFLU_RS31055	0.81	+1.2
5,254,536	-		PFLU_RS31055	0.81	+0.0
5,254,536	-		PFLU_RS31055	0.81	-1.0
5,254,536	-		PFLU_RS31055	0.81	+1.4
5,254,536	-		PFLU_RS31055	0.81	+0.9
5,254,536	-		PFLU_RS31055	0.81	-1.5
5,254,536	-		PFLU_RS31055	0.81	-0.7
5,254,536	-		PFLU_RS31055	0.81	-1.5
5,254,536	-		PFLU_RS31055	0.81	+0.1
5,254,536	-		PFLU_RS31055	0.81	-0.2
5,254,539	+		PFLU_RS31055	0.82	-0.6
5,254,539	+		PFLU_RS31055	0.82	-0.8
5,254,539	+		PFLU_RS31055	0.82	+0.5
5,254,539	+		PFLU_RS31055	0.82	+1.0
5,254,539	+		PFLU_RS31055	0.82	+0.4
5,254,539	+		PFLU_RS31055	0.82	-0.5
5,254,539	+		PFLU_RS31055	0.82	-1.9
5,254,539	+		PFLU_RS31055	0.82	+1.0
5,254,539	+		PFLU_RS31055	0.82	-1.5
5,254,539	+		PFLU_RS31055	0.82	+0.8
5,254,539	+		PFLU_RS31055	0.82	-0.1
5,254,540	-		PFLU_RS31055	0.82	-3.4
5,254,540	-		PFLU_RS31055	0.82	+0.6
5,254,540	-		PFLU_RS31055	0.82	+0.6
5,254,540	-		PFLU_RS31055	0.82	+0.8
5,254,540	-		PFLU_RS31055	0.82	+0.9
5,254,540	-		PFLU_RS31055	0.82	+0.1
5,254,540	-		PFLU_RS31055	0.82	-0.1
5,254,540	-		PFLU_RS31055	0.82	+0.6
5,254,540	-		PFLU_RS31055	0.82	-1.1
5,254,540	-		PFLU_RS31055	0.82	-0.8
5,254,540	-		PFLU_RS31055	0.82	+2.9
5,254,540	-		PFLU_RS31055	0.82	-0.3
5,254,540	-		PFLU_RS31055	0.82	+1.9
5,254,556	+		PFLU_RS31055	0.85	-1.1
5,254,556	+		PFLU_RS31055	0.85	+0.9
5,254,557	-		PFLU_RS31055	0.85	+0.3
5,254,631	+				+0.7
5,254,631	+				+0.3
5,254,631	+				-0.1
5,254,631	+				+0.1
5,254,631	+				+0.4
5,254,632	-				-2.3
5,254,632	-				-2.2
5,254,632	-				+0.8
5,254,635	-				+0.1
5,254,635	-				-1.1
5,254,661	+				-0.1
5,254,661	+				+0.1
5,254,661	+				-0.3
5,254,661	+				+0.1
5,254,661	+				+0.1
5,254,661	+				-1.1
5,254,661	+				+1.3
5,254,662	-				+0.1
5,254,662	-				+0.1
5,254,662	-				+1.3
5,254,662	-				-0.3
5,254,662	-				+0.2
5,254,662	-				+0.1
5,254,662	-				+0.2
5,254,662	-				+0.2
5,254,668	-				+1.2
5,254,696	-				+0.3
5,254,703	-				+0.6
5,254,735	+				-0.7
5,254,735	+				+0.2
5,254,741	+				-0.2
5,254,741	+				+1.3
5,254,741	+				+0.7
5,254,741	+				-0.5
5,254,741	+				+1.9
5,254,742	-				-0.7
5,254,744	+				-0.4
5,254,744	+				+0.7
5,254,745	-				+0.1
5,254,745	-				+0.2
5,254,799	+				-0.7
5,254,799	+				+1.5
5,254,799	+				+0.1
5,254,799	+				+0.6
5,254,799	+				-0.6
5,254,799	+				+0.6
5,254,799	+				-0.1
5,254,800	-				-0.3
5,254,800	-				+0.3
5,254,800	-				-0.4
5,254,800	-				+0.7
5,254,803	+				+1.4
5,254,803	+				-1.6
5,254,803	+				-1.1
5,254,803	+				+0.4
5,254,803	+				-1.1
5,254,804	-				+0.5
5,254,804	-				+0.2
5,254,804	-				-0.1
5,254,804	-				-0.4
5,254,804	-				+0.5
5,254,804	-				+0.5
5,254,804	-				-1.0
5,254,804	-				-0.3
5,254,804	-				-0.8
5,254,946	-		PFLU_RS23375	0.29	+0.6
5,254,946	-		PFLU_RS23375	0.29	+0.3
5,254,962	+		PFLU_RS23375	0.32	+0.6
5,254,962	+		PFLU_RS23375	0.32	-0.1
5,254,962	+		PFLU_RS23375	0.32	-0.2
5,254,962	+		PFLU_RS23375	0.32	-0.7
5,254,962	+		PFLU_RS23375	0.32	-0.1
5,254,962	+		PFLU_RS23375	0.32	-0.1
5,254,962	+		PFLU_RS23375	0.32	+0.2
5,254,962	+		PFLU_RS23375	0.32	+1.1
5,254,962	+		PFLU_RS23375	0.32	+0.2
5,254,963	-		PFLU_RS23375	0.32	+0.8
5,254,963	-		PFLU_RS23375	0.32	+1.0
5,254,963	-		PFLU_RS23375	0.32	-0.4
5,254,963	-		PFLU_RS23375	0.32	+0.7
5,254,963	-		PFLU_RS23375	0.32	-0.1
5,254,963	-		PFLU_RS23375	0.32	+0.2
5,254,963	-		PFLU_RS23375	0.32	+0.7
5,254,970	+		PFLU_RS23375	0.33	-0.8
5,254,970	+		PFLU_RS23375	0.33	-0.1
5,254,970	+		PFLU_RS23375	0.33	-1.1
5,254,970	+		PFLU_RS23375	0.33	-0.1
5,254,970	+		PFLU_RS23375	0.33	-2.2
5,254,970	+		PFLU_RS23375	0.33	-0.7
5,254,970	+		PFLU_RS23375	0.33	-1.1
5,254,971	-		PFLU_RS23375	0.33	+0.2
5,254,971	-		PFLU_RS23375	0.33	-0.1
5,254,971	-		PFLU_RS23375	0.33	-0.7
5,254,971	-		PFLU_RS23375	0.33	+1.5
5,254,971	-		PFLU_RS23375	0.33	+2.0
5,254,971	-		PFLU_RS23375	0.33	+4.0
5,254,971	-		PFLU_RS23375	0.33	+1.5
5,254,971	-		PFLU_RS23375	0.33	+0.5
5,254,972	+		PFLU_RS23375	0.33	-1.2
5,254,972	+		PFLU_RS23375	0.33	-0.5
5,254,972	+		PFLU_RS23375	0.33	-1.7
5,254,972	+		PFLU_RS23375	0.33	-0.4
5,254,972	+		PFLU_RS23375	0.33	+0.1
5,254,972	+		PFLU_RS23375	0.33	+0.7
5,254,973	-		PFLU_RS23375	0.33	-0.4
5,254,973	-		PFLU_RS23375	0.33	-1.0
5,254,973	-		PFLU_RS23375	0.33	+0.5
5,254,973	-		PFLU_RS23375	0.33	-0.6
5,254,973	-		PFLU_RS23375	0.33	+0.5
5,255,002	-		PFLU_RS23375	0.37	+0.7
5,255,002	-		PFLU_RS23375	0.37	+0.1
5,255,002	-		PFLU_RS23375	0.37	+0.4
5,255,011	+		PFLU_RS23375	0.39	+1.2
5,255,040	+		PFLU_RS23375	0.43	+0.2
5,255,040	+		PFLU_RS23375	0.43	-0.3
5,255,040	+		PFLU_RS23375	0.43	-0.4
5,255,040	+		PFLU_RS23375	0.43	-1.1
5,255,041	-		PFLU_RS23375	0.43	+0.9
5,255,041	-		PFLU_RS23375	0.43	+1.3
5,255,130	+		PFLU_RS23375	0.55	+0.2
5,255,130	+		PFLU_RS23375	0.55	+0.5
5,255,160	+		PFLU_RS23375	0.59	-0.6
5,255,161	-		PFLU_RS23375	0.60	+1.4
5,255,161	-		PFLU_RS23375	0.60	-0.9
5,255,292	+		PFLU_RS23375	0.78	+0.0
5,255,292	+		PFLU_RS23375	0.78	-0.1
5,255,292	+		PFLU_RS23375	0.78	+0.5
5,255,292	+		PFLU_RS23375	0.78	-0.0
5,255,292	+		PFLU_RS23375	0.78	-0.3
5,255,293	-		PFLU_RS23375	0.78	+0.9
5,255,293	-		PFLU_RS23375	0.78	+0.2
5,255,293	-		PFLU_RS23375	0.78	+0.3
5,255,293	-		PFLU_RS23375	0.78	-0.1
5,255,293	-		PFLU_RS23375	0.78	+0.0
5,255,293	-		PFLU_RS23375	0.78	+0.5
5,255,293	-		PFLU_RS23375	0.78	-0.1
5,255,293	-		PFLU_RS23375	0.78	+0.9
5,255,293	-		PFLU_RS23375	0.78	+0.4
5,255,293	-		PFLU_RS23375	0.78	+0.2
5,255,293	-		PFLU_RS23375	0.78	+1.0
5,255,293	-		PFLU_RS23375	0.78	+0.4
5,255,293	-		PFLU_RS23375	0.78	-1.1
5,255,293	-		PFLU_RS23375	0.78	-0.8
5,255,346	+		PFLU_RS23375	0.85	-0.8
5,255,346	+		PFLU_RS23375	0.85	-0.6
5,255,346	+		PFLU_RS23375	0.85	-1.8
5,255,347	-		PFLU_RS23375	0.86	-0.1
5,255,417	+				-0.5
5,255,417	+				+0.1
5,255,447	+				-2.1
5,255,448	-				+0.1
5,255,448	-				-0.5
5,255,488	+				+0.9
5,255,489	-				+1.3
5,255,489	-				+2.9
5,255,489	-				+0.9
5,255,489	-				+0.5
5,255,489	-				+0.3
5,255,492	+				-1.5
5,255,492	+				+1.7
5,255,492	+				+2.4
5,255,492	+				-0.8
5,255,493	-				-0.1
5,255,493	-				-0.5
5,255,493	-				+1.9
5,255,493	-				-0.7
5,255,553	+				-0.2
5,255,553	+				+2.5
5,255,553	+				+0.3
5,255,554	-				+1.9
5,255,554	-				+1.9
5,255,554	-				+1.9
5,255,554	-				+3.5
5,255,554	-				+1.9
5,255,738	-		PFLU_RS23380	0.33	+0.1
5,255,783	+		PFLU_RS23380	0.40	-0.1
5,255,783	+		PFLU_RS23380	0.40	+0.3
5,256,186	+				+1.0
5,256,187	-				-1.7
5,256,228	+				-0.2
5,256,255	-		PFLU_RS23385	0.16	-1.6
5,256,255	-		PFLU_RS23385	0.16	-0.4
5,256,255	-		PFLU_RS23385	0.16	-1.3
5,256,255	-		PFLU_RS23385	0.16	-1.1
5,256,255	-		PFLU_RS23385	0.16	-0.3
5,256,281	+		PFLU_RS23385	0.22	-0.2
5,256,281	+		PFLU_RS23385	0.22	-0.9
5,256,281	+		PFLU_RS23385	0.22	-0.1
5,256,281	+		PFLU_RS23385	0.22	-0.8
5,256,282	-		PFLU_RS23385	0.22	+0.3
5,256,282	-		PFLU_RS23385	0.22	+0.4
5,256,282	-		PFLU_RS23385	0.22	+0.8
5,256,300	+		PFLU_RS23385	0.27	-0.7
5,256,300	+		PFLU_RS23385	0.27	-1.4
5,256,300	+		PFLU_RS23385	0.27	-0.2
5,256,301	-		PFLU_RS23385	0.27	-0.1
5,256,301	-		PFLU_RS23385	0.27	-0.0
5,256,318	-		PFLU_RS23385	0.31	+0.3
5,256,382	+		PFLU_RS23385	0.47	-0.5
5,256,382	+		PFLU_RS23385	0.47	+1.0
5,256,386	+		PFLU_RS23385	0.48	+0.9
5,256,386	+		PFLU_RS23385	0.48	-1.0
5,256,386	+		PFLU_RS23385	0.48	+0.3
5,256,387	-		PFLU_RS23385	0.48	+0.6
5,256,387	-		PFLU_RS23385	0.48	+0.1
5,256,387	-		PFLU_RS23385	0.48	+0.5
5,256,387	-		PFLU_RS23385	0.48	+1.0
5,256,387	-		PFLU_RS23385	0.48	+0.6
5,256,494	+		PFLU_RS23385	0.75	+1.1
5,256,495	-		PFLU_RS23385	0.75	-0.5
5,256,495	-		PFLU_RS23385	0.75	+0.1
5,256,507	+		PFLU_RS23385	0.78	-0.7
5,256,507	+		PFLU_RS23385	0.78	-0.9
5,256,508	-		PFLU_RS23385	0.78	+0.7
5,256,508	-		PFLU_RS23385	0.78	+0.1
5,256,531	+		PFLU_RS23385	0.84	-1.4
5,256,532	-		PFLU_RS23385	0.84	+0.0
5,256,559	+				+1.0
5,256,559	+				-0.8
5,256,559	+				-0.2
5,256,559	+				-1.5
5,256,559	+				-0.5
5,256,559	+				-0.6
5,256,559	+				+0.5
5,256,559	+				-0.3
5,256,559	+				+0.3
5,256,559	+				+1.2
5,256,560	-				+0.7
5,256,560	-				+0.5
5,256,560	-				-0.0
5,256,560	-				-0.8
5,256,560	-				+0.1
5,256,560	-				+1.0
5,256,560	-				+0.3
5,256,560	-				+3.7
5,256,560	-				-1.4
5,256,560	-				-0.2
5,256,560	-				+1.4
5,256,575	+				+2.2
5,256,575	+				+0.7
5,256,586	+				+1.6
5,256,586	+				-0.7
5,256,586	+				-0.7
5,256,586	+				-0.1
5,256,586	+				-0.1
5,256,586	+				+0.0
5,256,586	+				+0.8
5,256,586	+				-0.9
5,256,586	+				-0.5
5,256,586	+				+1.0
5,256,586	+				+0.9
5,256,587	-				+0.4
5,256,587	-				+0.3
5,256,587	-				+2.0
5,256,587	-				+0.6
5,256,587	-				+0.5
5,256,587	-				-3.0
5,256,587	-				-0.7
5,256,587	-				-0.1
5,256,587	-				-0.9
5,256,587	-				-1.0
5,256,587	-				-1.0
5,256,587	-				+0.6
5,256,590	+				+0.0
5,256,590	+				-0.4
5,256,590	+				+0.6
5,256,590	+				+0.5
5,256,590	+				+0.1
5,256,590	+				-0.7
5,256,590	+				+0.4
5,256,590	+				-0.2
5,256,590	+				+0.5
5,256,590	+				+2.5
5,256,590	+				+0.5
5,256,590	+				-0.7
5,256,590	+				-1.7
5,256,590	+				+0.4
5,256,590	+				-0.1
5,256,591	-				-0.0
5,256,591	-				+1.0
5,256,591	-				+0.2
5,256,591	-				-1.1
5,256,591	-				-0.2
5,256,591	-				-0.8
5,256,591	-				-0.3
5,256,591	-				+1.6
5,256,591	-				+0.0
5,256,591	-				+0.0
5,256,591	-				+1.6
5,256,591	-				+0.9
5,256,591	-				+0.9
5,256,804	+		PFLU_RS23390	0.90	-0.2
5,256,804	+		PFLU_RS23390	0.90	-0.6
5,256,804	+		PFLU_RS23390	0.90	+0.1
5,256,804	+		PFLU_RS23390	0.90	-0.9
5,256,805	-				+0.1
5,256,805	-				+2.9
5,256,807	+				-0.1
5,256,807	+				+0.7
5,256,807	+				+0.7
5,256,807	+				-1.6
5,256,808	-				+1.9
5,256,808	-				+1.9
5,256,828	+				-3.3
5,256,828	+				-1.7
5,256,828	+				-0.1
5,256,828	+				-1.7
5,256,829	-				-2.2
5,256,829	-				+0.2
5,256,829	-				+1.5
5,256,829	-				-1.6
5,256,829	-				-0.1
5,256,829	-				+0.9
5,256,829	-				+0.5
5,256,829	-				+3.2
5,256,829	-				+0.3
5,256,829	-				+1.9
5,256,829	-				-0.1
5,256,829	-				-0.5
5,256,829	-				-1.2
5,256,870	+				-0.1
5,256,871	-				+1.2
5,256,893	+				+0.0
5,256,923	+				+2.4
5,256,923	+				-0.5
5,256,923	+				-2.4
5,256,923	+				+0.7
5,256,923	+				-0.0
5,256,924	-				+1.6
5,256,937	+				+1.9
5,256,937	+				+0.9
5,256,938	-				-0.1
5,256,938	-				+0.2
5,256,938	-				-0.5
5,256,938	-				+0.7
5,256,938	-				+0.1
5,256,982	+				+0.5
5,256,983	+				+0.0
5,256,983	-				+1.1
5,257,000	+				+0.5
5,257,000	+				+0.4
5,257,000	+				+0.7
5,257,000	+				-1.2
5,257,000	+				-1.5
5,257,000	+				-0.3
5,257,000	+				-0.1
5,257,000	+				+0.2
5,257,000	+				-0.9
5,257,001	-				+0.5
5,257,001	-				+0.2
5,257,001	-				+0.3
5,257,001	-				+0.2
5,257,001	-				+0.5
5,257,001	-				-0.4
5,257,001	-				+1.7
5,257,001	-				-0.5
5,257,001	-				+0.5
5,257,003	+				+0.1
5,257,004	-				+0.9
5,257,004	-				+0.2
5,257,077	+				-0.1
5,257,089	-				-1.6