Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23200

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
5,212,189	+				+0.7
5,212,189	+				+1.6
5,212,190	-				+1.3
5,212,190	-				+0.1
5,212,212	+				+1.8
5,212,212	+				+0.3
5,212,212	+				-1.5
5,212,217	+				+0.3
5,212,218	-				-0.5
5,212,218	-				-0.8
5,212,218	-				-0.6
5,212,251	+				-0.5
5,212,251	+				-0.6
5,212,270	+				+0.1
5,212,270	+				-1.2
5,212,270	+				+0.6
5,212,270	+				+0.1
5,212,275	-				-1.2
5,212,275	-				+1.1
5,212,275	-				-0.6
5,212,275	-				+0.5
5,212,275	-				+0.4
5,212,283	-				+0.5
5,212,283	-				-1.9
5,212,291	+				+0.3
5,212,291	+				+0.3
5,212,291	+				-0.0
5,212,292	-				+0.6
5,212,292	-				+0.3
5,212,292	-				+0.1
5,212,366	+		PFLU_RS23195	0.11	+0.6
5,212,366	+		PFLU_RS23195	0.11	+0.6
5,212,366	+		PFLU_RS23195	0.11	+0.8
5,212,366	+		PFLU_RS23195	0.11	-0.2
5,212,367	-		PFLU_RS23195	0.11	+0.0
5,212,367	-		PFLU_RS23195	0.11	+1.2
5,212,367	-		PFLU_RS23195	0.11	+0.1
5,212,367	-		PFLU_RS23195	0.11	+1.0
5,212,367	-		PFLU_RS23195	0.11	-0.4
5,212,367	-		PFLU_RS23195	0.11	-0.2
5,212,369	+		PFLU_RS23195	0.11	+1.3
5,212,369	+		PFLU_RS23195	0.11	+0.8
5,212,370	-		PFLU_RS23195	0.11	+0.1
5,212,396	+		PFLU_RS23195	0.15	+1.0
5,212,416	+		PFLU_RS23195	0.17	-1.3
5,212,416	+		PFLU_RS23195	0.17	+1.4
5,212,416	+		PFLU_RS23195	0.17	+0.8
5,212,416	+		PFLU_RS23195	0.17	+1.0
5,212,416	+		PFLU_RS23195	0.17	+1.2
5,212,416	+		PFLU_RS23195	0.17	+0.4
5,212,416	+		PFLU_RS23195	0.17	+0.8
5,212,416	+		PFLU_RS23195	0.17	+0.9
5,212,416	+		PFLU_RS23195	0.17	+1.5
5,212,416	+		PFLU_RS23195	0.17	+0.8
5,212,416	+		PFLU_RS23195	0.17	+0.7
5,212,417	-		PFLU_RS23195	0.18	+0.8
5,212,417	-		PFLU_RS23195	0.18	+0.5
5,212,417	-		PFLU_RS23195	0.18	+1.0
5,212,417	-		PFLU_RS23195	0.18	-0.1
5,212,417	-		PFLU_RS23195	0.18	+2.2
5,212,417	-		PFLU_RS23195	0.18	-0.1
5,212,417	-		PFLU_RS23195	0.18	+0.7
5,212,417	-		PFLU_RS23195	0.18	+1.1
5,212,417	-		PFLU_RS23195	0.18	-0.0
5,212,417	-		PFLU_RS23195	0.18	+0.8
5,212,420	+		PFLU_RS23195	0.18	+1.4
5,212,420	+		PFLU_RS23195	0.18	+0.3
5,212,421	-		PFLU_RS23195	0.18	+0.1
5,212,421	-		PFLU_RS23195	0.18	+0.2
5,212,421	-		PFLU_RS23195	0.18	+3.0
5,212,455	+		PFLU_RS23195	0.22	+0.2
5,212,455	+		PFLU_RS23195	0.22	+0.3
5,212,455	+		PFLU_RS23195	0.22	+0.6
5,212,455	+		PFLU_RS23195	0.22	+0.8
5,212,455	+		PFLU_RS23195	0.22	+0.8
5,212,455	+		PFLU_RS23195	0.22	-0.6
5,212,455	+		PFLU_RS23195	0.22	-2.1
5,212,455	+		PFLU_RS23195	0.22	+0.8
5,212,455	+		PFLU_RS23195	0.22	+0.4
5,212,455	+		PFLU_RS23195	0.22	-0.4
5,212,455	+		PFLU_RS23195	0.22	+0.2
5,212,455	+		PFLU_RS23195	0.22	+0.4
5,212,455	+		PFLU_RS23195	0.22	-0.5
5,212,456	-		PFLU_RS23195	0.23	+0.1
5,212,456	-		PFLU_RS23195	0.23	+0.9
5,212,456	-		PFLU_RS23195	0.23	+0.2
5,212,463	+		PFLU_RS23195	0.24	+1.6
5,212,463	+		PFLU_RS23195	0.24	+0.8
5,212,463	+		PFLU_RS23195	0.24	+0.7
5,212,464	-		PFLU_RS23195	0.24	+0.2
5,212,464	-		PFLU_RS23195	0.24	-0.0
5,212,493	+		PFLU_RS23195	0.27	-0.2
5,212,493	+		PFLU_RS23195	0.27	+0.7
5,212,494	-		PFLU_RS23195	0.28	+0.9
5,212,497	-		PFLU_RS23195	0.28	+0.6
5,212,528	-		PFLU_RS23195	0.32	+1.5
5,212,732	-		PFLU_RS23195	0.59	+0.5
5,212,732	-		PFLU_RS23195	0.59	-0.9
5,212,769	+		PFLU_RS23195	0.64	+1.4
5,212,769	+		PFLU_RS23195	0.64	+1.3
5,212,770	-		PFLU_RS23195	0.64	+0.3
5,212,770	-		PFLU_RS23195	0.64	+0.4
5,212,807	-		PFLU_RS23195	0.68	+1.7
5,212,821	+		PFLU_RS23195	0.70	-0.3
5,212,921	-		PFLU_RS23195	0.83	-0.5
5,212,969	-		PFLU_RS23195	0.90	-0.0
5,212,969	-		PFLU_RS23195	0.90	+1.0
5,212,969	-		PFLU_RS23195	0.90	+1.1
5,213,043	+				+0.2
5,213,043	+				+0.6
5,213,043	+				-0.1
5,213,044	-				-0.6
5,213,044	-				-0.2
5,213,045	+				-0.5
5,213,045	+				+0.3
5,213,045	+				+0.4
5,213,045	+				+0.8
5,213,045	+				-0.7
5,213,045	+				-0.9
5,213,045	+				+0.2
5,213,045	+				+0.0
5,213,046	-				+1.4
5,213,046	-				-0.0
5,213,046	-				-0.4
5,213,046	-				-0.9
5,213,046	-				-0.7
5,213,076	+				-1.0
5,213,077	-				+0.4
5,213,092	+				+0.9
5,213,092	+				+0.9
5,213,092	+				-0.4
5,213,092	+				-1.2
5,213,093	-				-0.8
5,213,109	+				+0.8
5,213,109	+				-0.2
5,213,109	+				+0.3
5,213,109	+				-0.2
5,213,125	+				-0.4
5,213,126	-				-0.6
5,213,268	+		PFLU_RS23200	0.24	-0.7
5,213,268	+		PFLU_RS23200	0.24	-0.5
5,213,268	+		PFLU_RS23200	0.24	-0.5
5,213,337	+		PFLU_RS23200	0.46	+1.8
5,213,407	+		PFLU_RS23200	0.67	+1.8
5,213,453	+		PFLU_RS23200	0.81	+0.8
5,213,453	+		PFLU_RS23200	0.81	+0.8
5,213,453	+		PFLU_RS23200	0.81	+1.8
5,213,455	+		PFLU_RS23200	0.82	-0.2
5,213,492	-				+0.4
5,213,492	-				+1.1
5,213,543	+				-0.6
5,213,544	-				+1.6
5,213,544	-				+0.9
5,213,544	-				+0.3
5,213,631	+		PFLU_RS23205	0.15	+2.0
5,213,631	+		PFLU_RS23205	0.15	+1.1
5,213,632	-		PFLU_RS23205	0.15	-1.5
5,213,657	+		PFLU_RS23205	0.20	-0.5
5,213,829	+		PFLU_RS23205	0.57	-0.3
5,213,829	+		PFLU_RS23205	0.57	+2.0
5,213,830	-		PFLU_RS23205	0.57	-2.0
5,213,830	-		PFLU_RS23205	0.57	+0.4
5,213,830	-		PFLU_RS23205	0.57	+0.8
5,213,920	+		PFLU_RS23205	0.76	-0.3
5,213,921	-		PFLU_RS23205	0.76	+0.8
5,213,941	+		PFLU_RS23205	0.81	-0.3
5,213,941	+		PFLU_RS23205	0.81	+0.1
5,213,941	+		PFLU_RS23205	0.81	+0.5
5,213,941	+		PFLU_RS23205	0.81	+1.5
5,213,941	+		PFLU_RS23205	0.81	+1.3
5,213,942	-		PFLU_RS23205	0.81	+1.2
5,213,942	-		PFLU_RS23205	0.81	-0.2
5,213,942	-		PFLU_RS23205	0.81	+0.3
5,213,942	-		PFLU_RS23205	0.81	+0.5
5,213,942	-		PFLU_RS23205	0.81	+1.6
5,213,942	-		PFLU_RS23205	0.81	+0.4
5,213,942	-		PFLU_RS23205	0.81	-0.1
5,213,942	-		PFLU_RS23205	0.81	-0.3
5,213,942	-		PFLU_RS23205	0.81	+0.1
5,213,943	+		PFLU_RS23205	0.81	+0.8
5,213,943	+		PFLU_RS23205	0.81	-0.1
5,213,943	+		PFLU_RS23205	0.81	+2.0
5,213,943	+		PFLU_RS23205	0.81	-0.0
5,213,943	+		PFLU_RS23205	0.81	-0.2
5,213,943	+		PFLU_RS23205	0.81	+0.5
5,213,943	+		PFLU_RS23205	0.81	+0.5
5,213,944	-		PFLU_RS23205	0.81	-1.5
5,213,944	-		PFLU_RS23205	0.81	+1.2
5,213,944	-		PFLU_RS23205	0.81	-0.3
5,213,944	-		PFLU_RS23205	0.81	+1.2
5,213,944	-		PFLU_RS23205	0.81	+0.2
5,213,944	-		PFLU_RS23205	0.81	+0.7
5,213,973	-		PFLU_RS23205	0.87	+0.5
5,213,973	-		PFLU_RS23205	0.87	-0.7
5,213,973	-		PFLU_RS23205	0.87	+1.6
5,214,040	+				+0.4
5,214,041	-				+0.7
5,214,096	+				+0.1
5,214,097	-				-0.7
5,214,097	-				-0.7
5,214,097	-				+1.0
5,214,097	-				+0.6
5,214,097	-				-0.0
5,214,102	+				-0.5
5,214,102	+				-0.1
5,214,102	+				-0.6
5,214,103	-				+0.1
5,214,103	-				-0.2
5,214,103	-				+0.8
5,214,103	-				+0.6
5,214,141	+				-0.3
5,214,141	+				+0.5
5,214,142	-				-0.0
5,214,277	+		PFLU_RS23210	0.20	+0.6
5,214,277	+		PFLU_RS23210	0.20	-1.1
5,214,277	+		PFLU_RS23210	0.20	+0.8
5,214,277	+		PFLU_RS23210	0.20	+0.9
5,214,277	+		PFLU_RS23210	0.20	+1.3
5,214,278	-		PFLU_RS23210	0.20	-1.1
5,214,460	+		PFLU_RS23210	0.44	-0.8
5,214,460	+		PFLU_RS23210	0.44	-0.0
5,214,460	+		PFLU_RS23210	0.44	+0.0
5,214,460	+		PFLU_RS23210	0.44	+0.6
5,214,460	+		PFLU_RS23210	0.44	-1.1
5,214,460	+		PFLU_RS23210	0.44	-0.3
5,214,460	+		PFLU_RS23210	0.44	-1.1
5,214,461	-		PFLU_RS23210	0.45	-1.5
5,214,461	-		PFLU_RS23210	0.45	-0.5
5,214,461	-		PFLU_RS23210	0.45	+0.0
5,214,461	-		PFLU_RS23210	0.45	-1.9
5,214,461	-		PFLU_RS23210	0.45	+1.1
5,214,461	-		PFLU_RS23210	0.45	-0.1
5,214,490	+		PFLU_RS23210	0.48	+0.4
5,214,490	+		PFLU_RS23210	0.48	-0.2
5,214,491	-		PFLU_RS23210	0.49	-0.8