Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22005

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
4,952,079	-		PFLU_RS31765	0.54	-1.2
4,952,150	+		PFLU_RS31765	0.84	-2.7
4,952,151	-		PFLU_RS31765	0.84	-0.8
4,952,151	-		PFLU_RS31765	0.84	-1.1
4,952,151	-		PFLU_RS31765	0.84	+0.6
4,952,154	+		PFLU_RS31765	0.86	-1.1
4,952,155	-		PFLU_RS31765	0.86	-1.6
4,952,155	-		PFLU_RS31765	0.86	+0.9
4,952,498	+				+0.5
4,952,498	+				-0.5
4,952,498	+				-0.1
4,952,564	+				+0.6
4,952,978	+				+0.5
4,952,978	+				-0.0
4,952,978	+				+0.1
4,952,978	+				-0.4
4,952,978	+				-1.0
4,952,978	+				+0.1
4,952,979	-				-0.2
4,952,979	-				-0.2
4,952,979	-				+0.1
4,952,979	-				-0.4
4,952,982	+				-1.1
4,952,982	+				-0.7
4,952,983	-				-0.1
4,952,983	-				+0.3
4,952,993	+				-0.2
4,953,061	+				+0.1
4,953,061	+				+0.7
4,953,061	+				-1.4
4,953,061	+				+0.5
4,953,061	+				-2.6
4,953,061	+				-1.2
4,953,061	+				-1.7
4,953,061	+				-0.6
4,953,061	+				-1.1
4,953,061	+				+0.1
4,953,061	+				-0.5
4,953,061	+				-0.6
4,953,061	+				-1.9
4,953,061	+				-0.2
4,953,061	+				+0.4
4,953,062	-				+0.9
4,953,062	-				+0.7
4,953,062	-				-1.1
4,953,062	-				+0.3
4,953,062	-				+0.4
4,953,062	-				-0.1
4,953,062	-				-3.1
4,953,062	-				-1.1
4,953,062	-				+1.1
4,953,062	-				-0.9
4,953,062	-				-0.9
4,953,062	-				+0.9
4,953,062	-				+0.9
4,953,070	+				-0.9
4,953,070	+				+0.5
4,953,071	-				+0.6
4,953,071	-				-0.7
4,953,143	+				+0.4
4,953,143	+				-0.4
4,953,143	+				-0.1
4,953,144	-				-0.3
4,953,144	-				-1.9
4,953,227	+		PFLU_RS22005	0.12	-0.1
4,953,227	+		PFLU_RS22005	0.12	+1.0
4,953,227	+		PFLU_RS22005	0.12	-2.2
4,953,227	+		PFLU_RS22005	0.12	-2.5
4,953,227	+		PFLU_RS22005	0.12	+0.4
4,953,227	+		PFLU_RS22005	0.12	-0.0
4,953,227	+		PFLU_RS22005	0.12	+0.3
4,953,228	-		PFLU_RS22005	0.12	-0.9
4,953,228	-		PFLU_RS22005	0.12	-1.3
4,953,228	-		PFLU_RS22005	0.12	-1.1
4,953,228	-		PFLU_RS22005	0.12	-1.3
4,953,228	-		PFLU_RS22005	0.12	-1.2
4,953,228	-		PFLU_RS22005	0.12	-1.7
4,953,519	+		PFLU_RS22005	0.32	-0.7
4,953,587	+		PFLU_RS22005	0.37	+1.3
4,953,587	+		PFLU_RS22005	0.37	-1.3
4,953,588	-		PFLU_RS22005	0.37	+0.7
4,953,588	-		PFLU_RS22005	0.37	-1.6
4,953,588	-		PFLU_RS22005	0.37	+0.7
4,953,726	+		PFLU_RS22005	0.47	-0.1
4,953,827	+		PFLU_RS22005	0.54	-0.6
4,953,827	+		PFLU_RS22005	0.54	+0.3
4,953,827	+		PFLU_RS22005	0.54	-0.4
4,953,827	+		PFLU_RS22005	0.54	-0.3
4,953,827	+		PFLU_RS22005	0.54	-0.7
4,953,828	-		PFLU_RS22005	0.54	-1.7
4,953,835	+		PFLU_RS22005	0.54	+0.3
4,953,835	+		PFLU_RS22005	0.54	-1.0
4,953,836	-		PFLU_RS22005	0.54	-0.3
4,953,836	-		PFLU_RS22005	0.54	-0.9
4,953,836	-		PFLU_RS22005	0.54	-1.0
4,953,836	-		PFLU_RS22005	0.54	-1.6
4,953,836	-		PFLU_RS22005	0.54	+0.5
4,954,111	+		PFLU_RS22005	0.73	-0.9
4,954,111	+		PFLU_RS22005	0.73	-0.7
4,954,111	+		PFLU_RS22005	0.73	-1.9
4,954,111	+		PFLU_RS22005	0.73	+0.0
4,954,111	+		PFLU_RS22005	0.73	-1.7
4,954,111	+		PFLU_RS22005	0.73	-1.5
4,954,111	+		PFLU_RS22005	0.73	-1.3
4,954,112	-		PFLU_RS22005	0.73	-2.0
4,954,112	-		PFLU_RS22005	0.73	-2.0
4,954,112	-		PFLU_RS22005	0.73	-1.0
4,954,112	-		PFLU_RS22005	0.73	-0.1
4,954,112	-		PFLU_RS22005	0.73	-1.9
4,954,184	+		PFLU_RS22005	0.78	-0.2
4,954,185	-		PFLU_RS22005	0.78	+0.7
4,954,185	-		PFLU_RS22005	0.78	-2.3
4,954,185	-		PFLU_RS22005	0.78	+0.7
4,954,194	-		PFLU_RS22005	0.79	-1.4
4,954,212	+		PFLU_RS22005	0.80	-2.0
4,954,213	-		PFLU_RS22005	0.80	+0.1
4,954,213	-		PFLU_RS22005	0.80	-1.6
4,954,213	-		PFLU_RS22005	0.80	-0.7
4,954,420	+				+0.2
4,954,452	+				-1.3
4,954,453	-				-0.3
4,954,453	-				-1.7
4,954,453	-				-0.6
4,954,453	-				+0.1
4,954,494	+				+0.5
4,954,511	+				+0.1
4,954,511	+				-0.6
4,954,512	-				-0.8
4,954,512	-				-1.0
4,954,513	+				-1.2
4,954,513	+				-1.3
4,954,514	-				-0.7
4,954,514	-				+0.9
4,954,514	-				-0.5
4,954,514	-				-0.4
4,954,514	-				+0.3
4,954,514	-				-0.5
4,954,581	-				-1.3
4,954,633	+		PFLU_RS22010	0.14	+0.3
4,954,633	+		PFLU_RS22010	0.14	-0.1
4,954,634	-		PFLU_RS22010	0.14	+1.7
4,954,634	-		PFLU_RS22010	0.14	-0.4
4,954,671	+		PFLU_RS22010	0.18	-0.5
4,954,671	+		PFLU_RS22010	0.18	-0.8
4,954,672	-		PFLU_RS22010	0.18	+0.8
4,954,875	+		PFLU_RS22010	0.38	-0.1
4,954,876	-		PFLU_RS22010	0.38	-0.2
4,955,164	+		PFLU_RS22010	0.67	-2.6
4,955,165	-		PFLU_RS22010	0.67	-0.7
4,955,201	-		PFLU_RS22010	0.71	-1.6
4,955,201	-		PFLU_RS22010	0.71	-0.2
4,955,286	+		PFLU_RS22010	0.80	-0.5
4,955,286	+		PFLU_RS22010	0.80	-0.5
4,955,286	+		PFLU_RS22010	0.80	-0.0
4,955,286	+		PFLU_RS22010	0.80	+1.3
4,955,286	+		PFLU_RS22010	0.80	-0.8
4,955,286	+		PFLU_RS22010	0.80	-2.7
4,955,286	+		PFLU_RS22010	0.80	-1.1
4,955,286	+		PFLU_RS22010	0.80	-0.4
4,955,286	+		PFLU_RS22010	0.80	-1.7
4,955,286	+		PFLU_RS22010	0.80	-0.0
4,955,287	-		PFLU_RS22010	0.80	-0.9
4,955,287	-		PFLU_RS22010	0.80	-1.0
4,955,287	-		PFLU_RS22010	0.80	-0.1
4,955,287	-		PFLU_RS22010	0.80	-1.5
4,955,302	+		PFLU_RS22010	0.81	+1.1
4,955,302	+		PFLU_RS22010	0.81	-0.9
4,955,303	-		PFLU_RS22010	0.81	+0.4
4,955,303	-		PFLU_RS22010	0.81	+0.2
4,955,303	-		PFLU_RS22010	0.81	-0.9
4,955,305	+		PFLU_RS22010	0.82	+0.5
4,955,305	+		PFLU_RS22010	0.82	-0.7
4,955,305	+		PFLU_RS22010	0.82	+0.5
4,955,486	+				-1.0
4,955,486	+				-1.4
4,955,486	+				+0.4
4,955,487	-				+1.0
4,955,487	-				-0.2
4,955,487	-				-1.7