Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS20360

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
4,594,566	+		PFLU_RS20350	0.45	+0.7
4,594,566	+		PFLU_RS20350	0.45	+0.5
4,594,567	-		PFLU_RS20350	0.45	+1.0
4,594,728	-		PFLU_RS20350	0.60	+1.6
4,594,761	+		PFLU_RS20350	0.63	+0.1
4,594,788	+		PFLU_RS20350	0.66	-0.6
4,594,788	+		PFLU_RS20350	0.66	+1.2
4,594,788	+		PFLU_RS20350	0.66	+0.6
4,594,789	-		PFLU_RS20350	0.66	-2.6
4,594,789	-		PFLU_RS20350	0.66	+2.1
4,594,789	-		PFLU_RS20350	0.66	-0.3
4,594,789	-		PFLU_RS20350	0.66	+1.3
4,594,789	-		PFLU_RS20350	0.66	+0.1
4,594,817	+		PFLU_RS20350	0.69	-0.5
4,594,856	+		PFLU_RS20350	0.73	+1.1
4,594,856	+		PFLU_RS20350	0.73	+0.4
4,594,856	+		PFLU_RS20350	0.73	+1.0
4,594,856	+		PFLU_RS20350	0.73	-0.4
4,595,136	+				+0.7
4,595,136	+				+1.5
4,595,136	+				-0.4
4,595,136	+				-0.5
4,595,136	+				+0.1
4,595,136	+				-1.0
4,595,136	+				+0.2
4,595,137	-				+0.6
4,595,137	-				+0.6
4,595,137	-				+0.7
4,595,137	-				-1.0
4,595,137	-				-1.0
4,595,137	-				+0.8
4,595,137	-				-2.7
4,595,163	+				+0.5
4,595,163	+				-0.1
4,595,163	+				-2.1
4,595,164	-				+0.9
4,595,164	-				-0.5
4,595,164	-				+1.5
4,595,164	-				+0.3
4,595,164	-				-0.5
4,595,171	+				-1.9
4,595,171	+				+0.1
4,595,199	+				+0.3
4,595,199	+				-0.2
4,595,200	-				+0.5
4,595,311	+		PFLU_RS20355	0.37	-0.5
4,595,312	-		PFLU_RS20355	0.37	-0.3
4,595,542	+				+1.3
4,595,584	+				+0.7
4,595,584	+				-1.1
4,595,584	+				+0.9
4,595,584	+				-0.2
4,595,584	+				+0.7
4,595,585	-				+0.5
4,595,585	-				+0.2
4,595,585	-				-0.2
4,595,585	-				-0.9
4,595,585	-				+0.0
4,595,604	+				+0.2
4,595,604	+				-0.2
4,595,604	+				-0.1
4,595,605	-				+0.9
4,595,721	+		PFLU_RS20360	0.17	+0.9
4,595,722	-		PFLU_RS20360	0.17	+1.4
4,595,939	+		PFLU_RS20360	0.41	+1.1
4,595,939	+		PFLU_RS20360	0.41	+0.1
4,595,940	-		PFLU_RS20360	0.41	+2.5
4,595,940	-		PFLU_RS20360	0.41	+0.8
4,595,954	+		PFLU_RS20360	0.43	+0.6
4,595,954	+		PFLU_RS20360	0.43	-0.2
4,595,954	+		PFLU_RS20360	0.43	+0.2
4,595,954	+		PFLU_RS20360	0.43	+0.9
4,595,954	+		PFLU_RS20360	0.43	+0.8
4,595,954	+		PFLU_RS20360	0.43	-1.9
4,595,955	-		PFLU_RS20360	0.43	+0.1
4,595,955	-		PFLU_RS20360	0.43	-0.4
4,595,955	-		PFLU_RS20360	0.43	-0.3
4,595,955	-		PFLU_RS20360	0.43	-0.8
4,596,038	+		PFLU_RS20360	0.52	+0.5
4,596,217	+		PFLU_RS20360	0.71	-1.8
4,596,217	+		PFLU_RS20360	0.71	+1.7
4,596,281	+		PFLU_RS20360	0.78	+0.2
4,596,282	-		PFLU_RS20360	0.78	-0.8
4,596,457	+				-0.7
4,596,457	+				+0.8
4,596,458	-				+1.5
4,596,458	-				+0.4
4,596,460	+				+1.1
4,596,460	+				-1.1
4,596,460	+				-0.0
4,596,460	+				-0.7
4,596,460	+				+0.2
4,596,461	-				-0.9
4,596,461	-				-0.3
4,596,461	-				+0.8
4,596,461	-				-0.7
4,596,461	-				-0.3
4,596,461	-				+0.2
4,596,461	-				+0.8
4,596,461	-				+0.6
4,596,466	+				-0.1
4,596,466	+				+0.2
4,596,467	-				+1.2
4,596,467	-				-0.0
4,596,467	-				+1.1
4,596,480	+				-0.1
4,596,480	+				-0.6
4,596,480	+				+0.8
4,596,480	+				+1.1
4,596,480	+				+0.6
4,596,480	+				-1.3
4,596,480	+				-0.2
4,596,480	+				-1.8
4,596,480	+				+1.7
4,596,480	+				+0.7
4,596,480	+				+0.4
4,596,480	+				-0.7
4,596,481	-				+0.7
4,596,481	-				+0.5
4,596,481	-				+1.0
4,596,481	-				-0.0
4,596,481	-				+0.2
4,596,481	-				+0.2
4,596,481	-				+1.5
4,596,481	-				+0.4
4,596,481	-				+0.4
4,596,481	-				-2.4
4,596,481	-				-2.4
4,596,481	-				+0.7
4,596,481	-				+1.2
4,596,481	-				+0.8
4,596,488	+				+0.1
4,596,488	+				+0.5
4,596,489	-				-0.4
4,596,512	-				+0.8
4,596,611	+		PFLU_RS20365	0.10	-1.0
4,596,611	+		PFLU_RS20365	0.10	+0.5
4,596,611	+		PFLU_RS20365	0.10	-0.2
4,596,612	-		PFLU_RS20365	0.11	+0.6
4,596,612	-		PFLU_RS20365	0.11	-1.2
4,596,618	+		PFLU_RS20365	0.11	-0.7
4,596,618	+		PFLU_RS20365	0.11	-1.5
4,596,619	-		PFLU_RS20365	0.11	+1.9
4,596,619	-		PFLU_RS20365	0.11	+0.9
4,596,619	-		PFLU_RS20365	0.11	-0.2
4,596,619	-		PFLU_RS20365	0.11	-0.1
4,596,683	-		PFLU_RS20365	0.17	+0.3
4,596,688	+		PFLU_RS20365	0.18	+0.7
4,596,688	+		PFLU_RS20365	0.18	+0.4
4,596,689	-		PFLU_RS20365	0.18	+0.4
4,596,783	+		PFLU_RS20365	0.27	-0.9
4,596,783	+		PFLU_RS20365	0.27	-0.2
4,596,783	+		PFLU_RS20365	0.27	+0.4
4,596,783	+		PFLU_RS20365	0.27	+0.7
4,596,783	+		PFLU_RS20365	0.27	+1.7
4,596,783	+		PFLU_RS20365	0.27	-0.4
4,596,783	+		PFLU_RS20365	0.27	-0.0
4,596,783	+		PFLU_RS20365	0.27	-0.2
4,596,784	-		PFLU_RS20365	0.27	+0.4
4,596,784	-		PFLU_RS20365	0.27	+0.5
4,596,784	-		PFLU_RS20365	0.27	+0.2
4,596,784	-		PFLU_RS20365	0.27	+1.1
4,596,784	-		PFLU_RS20365	0.27	+0.2
4,596,784	-		PFLU_RS20365	0.27	-1.1
4,596,784	-		PFLU_RS20365	0.27	-0.5
4,596,784	-		PFLU_RS20365	0.27	+0.6
4,596,848	+		PFLU_RS20365	0.34	+0.0
4,596,848	+		PFLU_RS20365	0.34	-0.9
4,596,849	-		PFLU_RS20365	0.34	-0.0
4,596,849	-		PFLU_RS20365	0.34	-0.2
4,596,849	-		PFLU_RS20365	0.34	-0.6
4,596,850	+		PFLU_RS20365	0.34	-0.5
4,596,850	+		PFLU_RS20365	0.34	-0.3
4,597,030	+		PFLU_RS20365	0.51	-0.0
4,597,072	-		PFLU_RS20365	0.56	+0.0
4,597,072	-		PFLU_RS20365	0.56	+1.1
4,597,072	-		PFLU_RS20365	0.56	+1.0
4,597,072	-		PFLU_RS20365	0.56	+1.0
4,597,072	-		PFLU_RS20365	0.56	+0.5
4,597,098	+		PFLU_RS20365	0.58	+0.4
4,597,098	+		PFLU_RS20365	0.58	+0.3
4,597,098	+		PFLU_RS20365	0.58	-1.4
4,597,098	+		PFLU_RS20365	0.58	-1.3
4,597,098	+		PFLU_RS20365	0.58	+0.4
4,597,098	+		PFLU_RS20365	0.58	+0.2
4,597,098	+		PFLU_RS20365	0.58	+0.1
4,597,098	+		PFLU_RS20365	0.58	+1.1
4,597,098	+		PFLU_RS20365	0.58	+0.7
4,597,098	+		PFLU_RS20365	0.58	-0.0
4,597,098	+		PFLU_RS20365	0.58	+0.9
4,597,099	-		PFLU_RS20365	0.58	-0.8
4,597,099	-		PFLU_RS20365	0.58	-0.2
4,597,099	-		PFLU_RS20365	0.58	+0.3
4,597,099	-		PFLU_RS20365	0.58	+0.8
4,597,207	+		PFLU_RS20365	0.69	+0.3
4,597,207	+		PFLU_RS20365	0.69	+0.5
4,597,207	+		PFLU_RS20365	0.69	-0.1
4,597,207	+		PFLU_RS20365	0.69	-0.5
4,597,208	-		PFLU_RS20365	0.69	+0.3
4,597,208	-		PFLU_RS20365	0.69	-1.6
4,597,208	-		PFLU_RS20365	0.69	+1.4
4,597,208	-		PFLU_RS20365	0.69	-0.9
4,597,208	-		PFLU_RS20365	0.69	+0.4
4,597,208	-		PFLU_RS20365	0.69	+0.3
4,597,208	-		PFLU_RS20365	0.69	+0.7
4,597,309	+		PFLU_RS20365	0.79	+0.9
4,597,310	-		PFLU_RS20365	0.79	+0.2
4,597,393	+		PFLU_RS20365	0.87	+1.0
4,597,393	+		PFLU_RS20365	0.87	+0.3
4,597,394	-		PFLU_RS20365	0.87	+1.0
4,597,394	-		PFLU_RS20365	0.87	+0.3
4,597,394	-		PFLU_RS20365	0.87	-0.4
4,597,394	-		PFLU_RS20365	0.87	+0.2
4,597,394	-		PFLU_RS20365	0.87	+1.2
4,597,432	-				+0.3