Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS18625

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
4,213,953	-		PFLU_RS18615	0.48	+0.7
4,213,953	-		PFLU_RS18615	0.48	-0.1
4,214,093	+		PFLU_RS18615	0.82	+0.4
4,214,093	+		PFLU_RS18615	0.82	+0.4
4,214,093	+		PFLU_RS18615	0.82	+0.4
4,214,094	-		PFLU_RS18615	0.82	+0.4
4,214,094	-		PFLU_RS18615	0.82	-0.6
4,214,098	-		PFLU_RS18615	0.83	-1.6
4,214,141	-				-0.1
4,214,184	+				-1.1
4,214,184	+				-1.6
4,214,184	+				+0.1
4,214,184	+				-0.6
4,214,184	+				+1.0
4,214,184	+				+1.4
4,214,185	-				+0.2
4,214,185	-				+2.8
4,214,185	-				-1.1
4,214,185	-				-1.6
4,214,263	+		PFLU_RS18620	0.13	-0.9
4,214,264	-		PFLU_RS18620	0.13	-0.5
4,214,289	+		PFLU_RS18620	0.16	+1.5
4,214,289	+		PFLU_RS18620	0.16	-1.1
4,214,289	+		PFLU_RS18620	0.16	-1.5
4,214,289	+		PFLU_RS18620	0.16	-0.1
4,214,289	+		PFLU_RS18620	0.16	+1.5
4,214,289	+		PFLU_RS18620	0.16	-1.4
4,214,289	+		PFLU_RS18620	0.16	+1.5
4,214,289	+		PFLU_RS18620	0.16	-1.1
4,214,289	+		PFLU_RS18620	0.16	-1.1
4,214,289	+		PFLU_RS18620	0.16	+2.0
4,214,289	+		PFLU_RS18620	0.16	+0.6
4,214,290	-		PFLU_RS18620	0.17	+0.5
4,214,290	-		PFLU_RS18620	0.17	+0.9
4,214,290	-		PFLU_RS18620	0.17	-0.9
4,214,290	-		PFLU_RS18620	0.17	-2.0
4,214,290	-		PFLU_RS18620	0.17	+0.1
4,214,290	-		PFLU_RS18620	0.17	+0.5
4,214,290	-		PFLU_RS18620	0.17	-0.1
4,214,339	+		PFLU_RS18620	0.24	+0.7
4,214,340	-		PFLU_RS18620	0.24	-1.4
4,214,358	+		PFLU_RS18620	0.27	+0.8
4,214,382	+		PFLU_RS18620	0.30	+1.0
4,214,383	-		PFLU_RS18620	0.30	-0.9
4,214,383	-		PFLU_RS18620	0.30	-1.4
4,214,383	-		PFLU_RS18620	0.30	+1.5
4,214,490	-		PFLU_RS18620	0.46	-1.1
4,214,490	-		PFLU_RS18620	0.46	-0.9
4,214,529	+		PFLU_RS18620	0.52	+0.5
4,214,595	+		PFLU_RS18620	0.62	+1.5
4,214,595	+		PFLU_RS18620	0.62	+0.0
4,214,595	+		PFLU_RS18620	0.62	-0.1
4,214,595	+		PFLU_RS18620	0.62	-0.1
4,214,595	+		PFLU_RS18620	0.62	-0.5
4,214,595	+		PFLU_RS18620	0.62	+0.5
4,214,595	+		PFLU_RS18620	0.62	+1.9
4,214,596	-		PFLU_RS18620	0.62	+1.5
4,214,596	-		PFLU_RS18620	0.62	-0.9
4,214,596	-		PFLU_RS18620	0.62	-0.1
4,214,596	-		PFLU_RS18620	0.62	-0.5
4,214,596	-		PFLU_RS18620	0.62	-1.1
4,214,596	-		PFLU_RS18620	0.62	-0.5
4,214,596	-		PFLU_RS18620	0.62	-0.9
4,214,596	-		PFLU_RS18620	0.62	+1.1
4,214,605	-		PFLU_RS18620	0.63	-1.0
4,214,605	-		PFLU_RS18620	0.63	+0.5
4,214,605	-		PFLU_RS18620	0.63	-0.4
4,214,605	-		PFLU_RS18620	0.63	+0.7
4,214,605	-		PFLU_RS18620	0.63	+1.0
4,214,605	-		PFLU_RS18620	0.63	-1.1
4,214,605	-		PFLU_RS18620	0.63	+1.5
4,214,649	+		PFLU_RS18620	0.70	+1.0
4,214,649	+		PFLU_RS18620	0.70	+0.5
4,214,649	+		PFLU_RS18620	0.70	-1.1
4,214,649	+		PFLU_RS18620	0.70	-0.5
4,214,650	-		PFLU_RS18620	0.70	-2.1
4,214,650	-		PFLU_RS18620	0.70	-1.1
4,214,650	-		PFLU_RS18620	0.70	-1.2
4,214,650	-		PFLU_RS18620	0.70	+0.5
4,214,650	-		PFLU_RS18620	0.70	-0.1
4,214,701	+		PFLU_RS18620	0.77	+0.5
4,214,701	+		PFLU_RS18620	0.77	-0.1
4,214,701	+		PFLU_RS18620	0.77	-0.1
4,214,701	+		PFLU_RS18620	0.77	+0.2
4,214,701	+		PFLU_RS18620	0.77	+0.5
4,214,702	-		PFLU_RS18620	0.78	+0.5
4,214,702	-		PFLU_RS18620	0.78	-0.1
4,214,870	+				-0.1
4,214,870	+				+0.1
4,214,870	+				+0.2
4,214,871	-				+0.5
4,214,871	-				-0.9
4,214,871	-				+1.5
4,214,872	+				-0.8
4,214,872	+				+0.8
4,214,873	-				-0.1
4,214,873	-				+2.5
4,214,898	+				+0.8
4,214,898	+				-1.4
4,214,899	-				-1.4
4,214,899	-				+1.8
4,214,899	-				-0.1
4,214,930	+				-0.1
4,214,930	+				+0.9
4,214,931	-				-0.7
4,214,946	+				+1.5
4,214,946	+				+2.0
4,214,946	+				+1.5
4,214,946	+				-0.5
4,214,946	+				+1.5
4,214,946	+				-0.5
4,214,946	+				-0.3
4,214,946	+				-0.4
4,214,946	+				-1.4
4,214,946	+				+0.6
4,214,947	-				+1.5
4,214,947	-				-1.4
4,214,947	-				-2.4
4,214,947	-				-1.1
4,214,958	+				+0.1
4,214,958	+				-0.1
4,214,958	+				-0.1
4,214,958	+				-1.1
4,214,959	-				+0.2
4,214,959	-				-0.1
4,214,960	+				-1.5
4,214,960	+				-1.7
4,214,960	+				-0.1
4,214,961	-				-0.1
4,214,961	-				+0.5
4,214,961	-				-0.1
4,214,961	-				+0.5
4,214,961	-				-0.9
4,214,961	-				+3.0
4,214,961	-				-1.7
4,214,961	-				-0.1
4,214,961	-				+0.9
4,215,117	+		PFLU_RS18625	0.11	+0.5
4,215,117	+		PFLU_RS18625	0.11	-1.7
4,215,117	+		PFLU_RS18625	0.11	+0.9
4,215,118	-		PFLU_RS18625	0.11	+2.3
4,215,129	+		PFLU_RS18625	0.11	-0.1
4,215,130	-		PFLU_RS18625	0.11	+1.5
4,215,130	-		PFLU_RS18625	0.11	-0.5
4,215,130	-		PFLU_RS18625	0.11	-1.4
4,215,207	+		PFLU_RS18625	0.16	+2.5
4,215,230	+		PFLU_RS18625	0.17	+3.0
4,215,318	+		PFLU_RS18625	0.22	+0.5
4,215,552	+		PFLU_RS18625	0.35	-0.1
4,215,552	+		PFLU_RS18625	0.35	-0.5
4,215,552	+		PFLU_RS18625	0.35	-0.1
4,215,552	+		PFLU_RS18625	0.35	+1.5
4,215,552	+		PFLU_RS18625	0.35	-1.5
4,215,553	-		PFLU_RS18625	0.35	-1.4
4,215,553	-		PFLU_RS18625	0.35	+1.9
4,215,553	-		PFLU_RS18625	0.35	-0.9
4,215,553	-		PFLU_RS18625	0.35	-0.5
4,215,605	+		PFLU_RS18625	0.38	-0.1
4,215,606	-		PFLU_RS18625	0.38	-0.9
4,215,769	-		PFLU_RS18625	0.47	-0.9
4,215,806	-		PFLU_RS18625	0.49	+0.9
4,215,881	+		PFLU_RS18625	0.54	-0.1
4,215,881	+		PFLU_RS18625	0.54	+0.5
4,215,885	+		PFLU_RS18625	0.54	-1.1
4,215,885	+		PFLU_RS18625	0.54	+0.9
4,215,885	+		PFLU_RS18625	0.54	+1.5
4,215,885	+		PFLU_RS18625	0.54	+1.5
4,215,885	+		PFLU_RS18625	0.54	-0.1
4,215,885	+		PFLU_RS18625	0.54	+1.5
4,215,885	+		PFLU_RS18625	0.54	+0.6
4,215,885	+		PFLU_RS18625	0.54	-0.9
4,215,885	+		PFLU_RS18625	0.54	-1.1
4,215,885	+		PFLU_RS18625	0.54	+0.9
4,215,885	+		PFLU_RS18625	0.54	-0.9
4,215,885	+		PFLU_RS18625	0.54	-1.1
4,215,886	-		PFLU_RS18625	0.54	-0.9
4,215,886	-		PFLU_RS18625	0.54	+0.1
4,215,886	-		PFLU_RS18625	0.54	-1.1
4,215,886	-		PFLU_RS18625	0.54	+1.5
4,215,886	-		PFLU_RS18625	0.54	-0.9
4,215,886	-		PFLU_RS18625	0.54	+1.5
4,215,886	-		PFLU_RS18625	0.54	+1.5
4,215,886	-		PFLU_RS18625	0.54	+1.5
4,215,886	-		PFLU_RS18625	0.54	+0.1
4,215,886	-		PFLU_RS18625	0.54	-0.5
4,215,886	-		PFLU_RS18625	0.54	+0.5
4,215,886	-		PFLU_RS18625	0.54	-0.1
4,215,886	-		PFLU_RS18625	0.54	-0.9
4,215,886	-		PFLU_RS18625	0.54	+0.5
4,215,886	-		PFLU_RS18625	0.54	+1.1
4,215,886	-		PFLU_RS18625	0.54	-1.5
4,215,886	-		PFLU_RS18625	0.54	-0.1
4,215,886	-		PFLU_RS18625	0.54	+0.5
4,215,949	-		PFLU_RS18625	0.57	-0.5
4,216,149	+		PFLU_RS18625	0.69	-0.5
4,216,150	-		PFLU_RS18625	0.69	-0.1
4,216,296	+		PFLU_RS18625	0.77	+0.5
4,216,383	+		PFLU_RS18625	0.82	+0.5
4,216,384	-		PFLU_RS18625	0.82	-0.5
4,216,542	+				+0.4
4,216,543	-				-1.0
4,216,575	+				+0.1
4,216,665	+				-0.1
4,216,665	+				-0.1
4,216,666	-				-0.9
4,216,673	+				+0.4
4,216,673	+				-0.6
4,216,674	-				-0.1
4,216,674	-				+1.4
4,216,676	+				-1.9
4,216,677	-				+1.4
4,216,874	+		PFLU_RS18630	0.33	+0.4
4,216,874	+		PFLU_RS18630	0.33	+0.7
4,216,875	-		PFLU_RS18630	0.33	-0.6
4,216,875	-		PFLU_RS18630	0.33	+0.4
4,216,934	+		PFLU_RS18630	0.45	+2.4
4,216,935	-		PFLU_RS18630	0.45	+0.4
4,217,000	+		PFLU_RS18630	0.58	-0.9
4,217,000	+		PFLU_RS18630	0.58	-2.1
4,217,001	-		PFLU_RS18630	0.58	-0.6
4,217,001	-		PFLU_RS18630	0.58	+3.0
4,217,001	-		PFLU_RS18630	0.58	+0.9
4,217,315	-				+0.4
4,217,520	+		PFLU_RS18635	0.23	-0.4
4,217,520	+		PFLU_RS18635	0.23	-1.1
4,217,614	+		PFLU_RS18635	0.30	-0.9
4,217,614	+		PFLU_RS18635	0.30	+0.7
4,217,614	+		PFLU_RS18635	0.30	-0.5
4,217,614	+		PFLU_RS18635	0.30	+0.5
4,217,614	+		PFLU_RS18635	0.30	+1.5