Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS16785

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
3,807,664	+		PFLU_RS16780	0.43	-1.2
3,807,841	+		PFLU_RS16780	0.55	-0.1
3,807,842	-		PFLU_RS16780	0.55	-1.2
3,807,842	-		PFLU_RS16780	0.55	-1.0
3,807,842	-		PFLU_RS16780	0.55	+0.3
3,807,842	-		PFLU_RS16780	0.55	-1.2
3,807,842	-		PFLU_RS16780	0.55	+1.6
3,807,842	-		PFLU_RS16780	0.55	+0.5
3,807,842	-		PFLU_RS16780	0.55	+0.3
3,807,842	-		PFLU_RS16780	0.55	+0.8
3,807,842	-		PFLU_RS16780	0.55	-0.2
3,807,844	+		PFLU_RS16780	0.55	-2.0
3,807,844	+		PFLU_RS16780	0.55	-0.1
3,807,844	+		PFLU_RS16780	0.55	+0.7
3,807,844	+		PFLU_RS16780	0.55	-0.4
3,807,844	+		PFLU_RS16780	0.55	+0.7
3,807,844	+		PFLU_RS16780	0.55	+1.0
3,807,844	+		PFLU_RS16780	0.55	+1.5
3,807,844	+		PFLU_RS16780	0.55	-0.8
3,807,844	+		PFLU_RS16780	0.55	+0.1
3,807,844	+		PFLU_RS16780	0.55	-0.2
3,807,844	+		PFLU_RS16780	0.55	+0.4
3,807,844	+		PFLU_RS16780	0.55	+0.8
3,807,844	+		PFLU_RS16780	0.55	+0.3
3,807,844	+		PFLU_RS16780	0.55	+0.0
3,807,845	-		PFLU_RS16780	0.55	+0.2
3,807,845	-		PFLU_RS16780	0.55	-1.0
3,807,845	-		PFLU_RS16780	0.55	-0.6
3,807,845	-		PFLU_RS16780	0.55	-0.6
3,807,845	-		PFLU_RS16780	0.55	-0.9
3,807,845	-		PFLU_RS16780	0.55	+0.3
3,807,845	-		PFLU_RS16780	0.55	+1.2
3,807,845	-		PFLU_RS16780	0.55	+0.7
3,807,845	-		PFLU_RS16780	0.55	+1.4
3,807,845	-		PFLU_RS16780	0.55	-0.5
3,807,845	-		PFLU_RS16780	0.55	+0.4
3,807,859	+		PFLU_RS16780	0.56	+0.5
3,807,859	+		PFLU_RS16780	0.56	-0.9
3,807,859	+		PFLU_RS16780	0.56	-1.1
3,807,859	+		PFLU_RS16780	0.56	+1.8
3,807,859	+		PFLU_RS16780	0.56	+0.8
3,807,859	+		PFLU_RS16780	0.56	+0.9
3,807,859	+		PFLU_RS16780	0.56	-1.9
3,807,859	+		PFLU_RS16780	0.56	+0.1
3,807,859	+		PFLU_RS16780	0.56	+0.4
3,807,859	+		PFLU_RS16780	0.56	-0.3
3,807,859	+		PFLU_RS16780	0.56	+1.1
3,807,859	+		PFLU_RS16780	0.56	-0.1
3,807,859	+		PFLU_RS16780	0.56	-1.6
3,807,859	+		PFLU_RS16780	0.56	-1.0
3,807,859	+		PFLU_RS16780	0.56	+0.4
3,807,859	+		PFLU_RS16780	0.56	+0.2
3,807,859	+		PFLU_RS16780	0.56	+0.5
3,807,859	+		PFLU_RS16780	0.56	+0.4
3,807,860	-		PFLU_RS16780	0.56	-0.5
3,807,860	-		PFLU_RS16780	0.56	+0.1
3,807,860	-		PFLU_RS16780	0.56	+0.7
3,807,860	-		PFLU_RS16780	0.56	-0.6
3,807,860	-		PFLU_RS16780	0.56	-0.7
3,807,860	-		PFLU_RS16780	0.56	+0.4
3,807,860	-		PFLU_RS16780	0.56	-0.2
3,807,860	-		PFLU_RS16780	0.56	+0.7
3,807,860	-		PFLU_RS16780	0.56	+0.1
3,807,860	-		PFLU_RS16780	0.56	-2.6
3,807,871	+		PFLU_RS16780	0.57	-0.5
3,807,871	+		PFLU_RS16780	0.57	-0.1
3,807,872	-		PFLU_RS16780	0.57	-2.5
3,807,882	+		PFLU_RS16780	0.58	+0.7
3,807,892	+		PFLU_RS16780	0.58	+1.2
3,807,892	+		PFLU_RS16780	0.58	+0.8
3,807,892	+		PFLU_RS16780	0.58	+0.6
3,807,892	+		PFLU_RS16780	0.58	+0.3
3,807,893	-		PFLU_RS16780	0.58	+0.4
3,807,893	-		PFLU_RS16780	0.58	-0.1
3,807,893	-		PFLU_RS16780	0.58	+1.0
3,807,893	-		PFLU_RS16780	0.58	+0.9
3,808,047	+		PFLU_RS16780	0.69	-1.0
3,808,047	+		PFLU_RS16780	0.69	+0.1
3,808,047	+		PFLU_RS16780	0.69	-0.1
3,808,047	+		PFLU_RS16780	0.69	+0.5
3,808,048	-		PFLU_RS16780	0.69	-1.0
3,808,048	-		PFLU_RS16780	0.69	+0.0
3,808,048	-		PFLU_RS16780	0.69	-0.2
3,808,048	-		PFLU_RS16780	0.69	+0.7
3,808,048	-		PFLU_RS16780	0.69	-0.7
3,808,048	-		PFLU_RS16780	0.69	-1.0
3,808,048	-		PFLU_RS16780	0.69	-0.4
3,808,175	-		PFLU_RS16780	0.77	-1.4
3,808,224	-		PFLU_RS16780	0.80	-0.9
3,808,270	+		PFLU_RS16780	0.83	+0.4
3,808,270	+		PFLU_RS16780	0.83	+0.4
3,808,270	+		PFLU_RS16780	0.83	+0.4
3,808,270	+		PFLU_RS16780	0.83	-0.2
3,808,270	+		PFLU_RS16780	0.83	+1.0
3,808,270	+		PFLU_RS16780	0.83	+0.4
3,808,271	-		PFLU_RS16780	0.83	-0.0
3,808,271	-		PFLU_RS16780	0.83	-2.0
3,808,271	-		PFLU_RS16780	0.83	-1.6
3,808,271	-		PFLU_RS16780	0.83	-0.4
3,808,271	-		PFLU_RS16780	0.83	+1.1
3,808,271	-		PFLU_RS16780	0.83	-0.9
3,808,271	-		PFLU_RS16780	0.83	-0.3
3,808,271	-		PFLU_RS16780	0.83	-0.8
3,808,271	-		PFLU_RS16780	0.83	-0.2
3,808,283	-		PFLU_RS16780	0.84	+0.1
3,808,285	+		PFLU_RS16780	0.84	-1.6
3,808,285	+		PFLU_RS16780	0.84	-2.2
3,808,285	+		PFLU_RS16780	0.84	+2.1
3,808,285	+		PFLU_RS16780	0.84	+1.4
3,808,285	+		PFLU_RS16780	0.84	+0.7
3,808,286	-		PFLU_RS16780	0.84	-0.7
3,808,286	-		PFLU_RS16780	0.84	+0.6
3,808,286	-		PFLU_RS16780	0.84	+1.0
3,808,286	-		PFLU_RS16780	0.84	-1.4
3,808,512	+				-0.8
3,808,512	+				+0.4
3,808,513	-				+0.3
3,808,513	-				+0.8
3,808,516	+				-0.0
3,808,516	+				+0.8
3,808,516	+				-0.8
3,808,516	+				+0.5
3,808,517	-				+1.2
3,808,571	+				+0.0
3,808,571	+				+0.5
3,808,571	+				+0.2
3,808,571	+				+0.3
3,808,572	-				+0.7
3,808,572	-				+0.8
3,808,580	+				+1.0
3,808,580	+				-1.2
3,808,908	+		PFLU_RS16785	0.66	-0.1
3,808,909	-		PFLU_RS16785	0.66	-0.5
3,808,909	-		PFLU_RS16785	0.66	-2.1
3,809,042	+				-1.2
3,809,042	+				-0.1
3,809,049	+				+0.5
3,809,049	+				+0.7
3,809,115	+				+0.5
3,809,116	-				-0.5
3,809,141	+				+0.1
3,809,142	-				+0.5
3,809,171	+		PFLU_RS16790	0.13	+0.2
3,809,172	-		PFLU_RS16790	0.13	-1.4
3,809,258	+		PFLU_RS16790	0.22	+0.7
3,809,363	+		PFLU_RS16790	0.34	-0.3
3,809,651	-		PFLU_RS16790	0.65	+0.6
3,809,760	+		PFLU_RS16790	0.77	-0.1
3,809,761	-		PFLU_RS16790	0.77	-0.2
3,809,761	-		PFLU_RS16790	0.77	-0.3
3,809,765	+		PFLU_RS16790	0.77	-0.2
3,809,766	-		PFLU_RS16790	0.77	-0.6
3,809,874	-		PFLU_RS16790	0.89	-0.9
3,809,970	+				-0.9
3,809,970	+				+0.4
3,809,970	+				+0.8
3,809,976	+				-0.5
3,809,977	-				+1.4
3,809,977	-				+0.3
3,809,977	-				-2.1
3,810,008	+				+2.2
3,810,009	-				+0.4
3,810,065	+				-0.9
3,810,065	+				-0.5
3,810,066	-				+0.4
3,810,066	-				+0.8
3,810,066	-				-1.2
3,810,066	-				+0.2