Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS15700

Experiment: succinate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS15695 and PFLU_RS15700 are separated by 34 nucleotidesPFLU_RS15700 and PFLU_RS15705 are separated by 46 nucleotides PFLU_RS15695: PFLU_RS15695 - taurine catabolism dioxygenase TauD, at 3,532,191 to 3,533,237 _RS15695 PFLU_RS15700: PFLU_RS15700 - non-ribosomal peptide synthetase, at 3,533,272 to 3,536,283 _RS15700 PFLU_RS15705: PFLU_RS15705 - non-ribosomal peptide synthetase, at 3,536,330 to 3,550,240 _RS15705 Position (kb) 3533 3534 3535 3536 3537Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3532.396 kb on - strand, within PFLU_RS15695at 3532.485 kb on + strand, within PFLU_RS15695at 3532.485 kb on + strand, within PFLU_RS15695at 3532.485 kb on + strand, within PFLU_RS15695at 3532.485 kb on + strand, within PFLU_RS15695at 3532.485 kb on + strand, within PFLU_RS15695at 3532.486 kb on - strand, within PFLU_RS15695at 3532.486 kb on - strand, within PFLU_RS15695at 3532.486 kb on - strand, within PFLU_RS15695at 3532.487 kb on + strand, within PFLU_RS15695at 3532.487 kb on + strand, within PFLU_RS15695at 3532.487 kb on + strand, within PFLU_RS15695at 3532.487 kb on + strand, within PFLU_RS15695at 3532.487 kb on + strand, within PFLU_RS15695at 3532.487 kb on + strand, within PFLU_RS15695at 3532.488 kb on - strand, within PFLU_RS15695at 3532.488 kb on - strand, within PFLU_RS15695at 3532.488 kb on - strand, within PFLU_RS15695at 3532.488 kb on - strand, within PFLU_RS15695at 3532.488 kb on - strand, within PFLU_RS15695at 3532.488 kb on - strand, within PFLU_RS15695at 3532.488 kb on - strand, within PFLU_RS15695at 3532.488 kb on - strand, within PFLU_RS15695at 3532.488 kb on - strand, within PFLU_RS15695at 3532.530 kb on + strand, within PFLU_RS15695at 3532.530 kb on + strand, within PFLU_RS15695at 3532.530 kb on + strand, within PFLU_RS15695at 3532.530 kb on + strand, within PFLU_RS15695at 3532.531 kb on - strand, within PFLU_RS15695at 3532.531 kb on - strand, within PFLU_RS15695at 3532.531 kb on - strand, within PFLU_RS15695at 3532.531 kb on - strand, within PFLU_RS15695at 3532.531 kb on - strand, within PFLU_RS15695at 3532.531 kb on - strand, within PFLU_RS15695at 3532.587 kb on + strand, within PFLU_RS15695at 3532.588 kb on - strand, within PFLU_RS15695at 3532.588 kb on - strand, within PFLU_RS15695at 3532.620 kb on + strand, within PFLU_RS15695at 3532.620 kb on + strand, within PFLU_RS15695at 3532.620 kb on + strand, within PFLU_RS15695at 3532.621 kb on - strand, within PFLU_RS15695at 3532.621 kb on - strand, within PFLU_RS15695at 3532.621 kb on - strand, within PFLU_RS15695at 3532.734 kb on + strand, within PFLU_RS15695at 3532.735 kb on - strand, within PFLU_RS15695at 3532.735 kb on - strand, within PFLU_RS15695at 3532.742 kb on + strand, within PFLU_RS15695at 3532.742 kb on + strand, within PFLU_RS15695at 3532.742 kb on + strand, within PFLU_RS15695at 3532.742 kb on + strand, within PFLU_RS15695at 3532.742 kb on + strand, within PFLU_RS15695at 3532.742 kb on + strand, within PFLU_RS15695at 3532.742 kb on + strand, within PFLU_RS15695at 3532.743 kb on - strand, within PFLU_RS15695at 3532.747 kb on - strand, within PFLU_RS15695at 3532.815 kb on + strand, within PFLU_RS15695at 3532.816 kb on - strand, within PFLU_RS15695at 3532.894 kb on + strand, within PFLU_RS15695at 3533.028 kb on + strand, within PFLU_RS15695at 3533.029 kb on - strand, within PFLU_RS15695at 3533.029 kb on - strand, within PFLU_RS15695at 3533.082 kb on + strand, within PFLU_RS15695at 3533.295 kb on + strandat 3533.743 kb on + strand, within PFLU_RS15700at 3534.160 kb on + strand, within PFLU_RS15700at 3534.160 kb on + strand, within PFLU_RS15700at 3534.160 kb on + strand, within PFLU_RS15700at 3534.161 kb on - strand, within PFLU_RS15700at 3534.161 kb on - strand, within PFLU_RS15700at 3534.161 kb on - strand, within PFLU_RS15700at 3534.161 kb on - strand, within PFLU_RS15700at 3534.163 kb on + strand, within PFLU_RS15700at 3534.164 kb on - strand, within PFLU_RS15700at 3534.164 kb on - strand, within PFLU_RS15700at 3534.164 kb on - strand, within PFLU_RS15700at 3534.164 kb on - strand, within PFLU_RS15700at 3534.164 kb on - strand, within PFLU_RS15700at 3534.164 kb on - strand, within PFLU_RS15700at 3534.164 kb on - strand, within PFLU_RS15700at 3534.164 kb on - strand, within PFLU_RS15700at 3534.307 kb on + strand, within PFLU_RS15700at 3534.307 kb on + strand, within PFLU_RS15700at 3534.307 kb on + strand, within PFLU_RS15700at 3534.307 kb on + strand, within PFLU_RS15700at 3534.307 kb on + strand, within PFLU_RS15700at 3534.307 kb on + strand, within PFLU_RS15700at 3534.308 kb on - strand, within PFLU_RS15700at 3534.308 kb on - strand, within PFLU_RS15700at 3534.308 kb on - strand, within PFLU_RS15700at 3534.308 kb on - strand, within PFLU_RS15700at 3534.308 kb on - strand, within PFLU_RS15700at 3534.308 kb on - strand, within PFLU_RS15700at 3534.473 kb on + strand, within PFLU_RS15700at 3534.473 kb on + strand, within PFLU_RS15700at 3534.474 kb on - strand, within PFLU_RS15700at 3534.474 kb on - strand, within PFLU_RS15700at 3534.518 kb on + strand, within PFLU_RS15700at 3534.518 kb on + strand, within PFLU_RS15700at 3534.518 kb on + strand, within PFLU_RS15700at 3534.519 kb on - strand, within PFLU_RS15700at 3534.519 kb on - strand, within PFLU_RS15700at 3534.565 kb on + strand, within PFLU_RS15700at 3534.566 kb on - strand, within PFLU_RS15700at 3534.712 kb on + strand, within PFLU_RS15700at 3534.712 kb on + strand, within PFLU_RS15700at 3534.712 kb on + strand, within PFLU_RS15700at 3534.712 kb on + strand, within PFLU_RS15700at 3534.712 kb on + strand, within PFLU_RS15700at 3534.712 kb on + strand, within PFLU_RS15700at 3534.713 kb on - strand, within PFLU_RS15700at 3534.734 kb on - strand, within PFLU_RS15700at 3534.754 kb on + strand, within PFLU_RS15700at 3534.754 kb on + strand, within PFLU_RS15700at 3534.755 kb on - strand, within PFLU_RS15700at 3534.755 kb on - strand, within PFLU_RS15700at 3534.755 kb on - strand, within PFLU_RS15700at 3534.908 kb on - strand, within PFLU_RS15700at 3534.916 kb on + strand, within PFLU_RS15700at 3534.916 kb on + strand, within PFLU_RS15700at 3534.916 kb on + strand, within PFLU_RS15700at 3534.916 kb on + strand, within PFLU_RS15700at 3534.917 kb on - strand, within PFLU_RS15700at 3534.917 kb on - strand, within PFLU_RS15700at 3534.917 kb on - strand, within PFLU_RS15700at 3534.917 kb on - strand, within PFLU_RS15700at 3534.976 kb on + strand, within PFLU_RS15700at 3534.977 kb on - strand, within PFLU_RS15700at 3534.977 kb on - strand, within PFLU_RS15700at 3534.977 kb on - strand, within PFLU_RS15700at 3535.003 kb on + strand, within PFLU_RS15700at 3535.004 kb on - strand, within PFLU_RS15700at 3535.198 kb on + strand, within PFLU_RS15700at 3535.199 kb on - strand, within PFLU_RS15700at 3535.330 kb on + strand, within PFLU_RS15700at 3535.363 kb on + strand, within PFLU_RS15700at 3535.363 kb on + strand, within PFLU_RS15700at 3535.364 kb on - strand, within PFLU_RS15700at 3535.370 kb on + strand, within PFLU_RS15700at 3535.370 kb on + strand, within PFLU_RS15700at 3535.370 kb on + strand, within PFLU_RS15700at 3535.370 kb on + strand, within PFLU_RS15700at 3535.371 kb on - strand, within PFLU_RS15700at 3535.371 kb on - strand, within PFLU_RS15700at 3535.371 kb on - strand, within PFLU_RS15700at 3535.768 kb on + strand, within PFLU_RS15700at 3535.768 kb on + strand, within PFLU_RS15700at 3535.768 kb on + strand, within PFLU_RS15700at 3535.768 kb on + strand, within PFLU_RS15700at 3535.768 kb on + strand, within PFLU_RS15700at 3535.789 kb on + strand, within PFLU_RS15700at 3535.843 kb on + strand, within PFLU_RS15700at 3535.843 kb on + strand, within PFLU_RS15700at 3535.843 kb on + strand, within PFLU_RS15700at 3535.843 kb on + strand, within PFLU_RS15700at 3535.844 kb on - strand, within PFLU_RS15700at 3535.844 kb on - strand, within PFLU_RS15700at 3535.844 kb on - strand, within PFLU_RS15700at 3536.071 kb on - strandat 3536.438 kb on + strandat 3536.751 kb on - strandat 3536.751 kb on - strandat 3536.797 kb on + strandat 3536.798 kb on - strandat 3536.798 kb on - strandat 3536.832 kb on - strandat 3536.854 kb on + strandat 3536.855 kb on - strandat 3536.855 kb on - strandat 3536.891 kb on + strandat 3536.891 kb on + strandat 3536.891 kb on + strandat 3536.892 kb on - strandat 3536.892 kb on - strandat 3536.892 kb on - strandat 3536.998 kb on - strandat 3537.112 kb on + strandat 3537.152 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C); with MOPS
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3,532,396 - PFLU_RS15695 0.20 -0.2
3,532,485 + PFLU_RS15695 0.28 +0.6
3,532,485 + PFLU_RS15695 0.28 +0.3
3,532,485 + PFLU_RS15695 0.28 +0.1
3,532,485 + PFLU_RS15695 0.28 -0.7
3,532,485 + PFLU_RS15695 0.28 -0.6
3,532,486 - PFLU_RS15695 0.28 +0.5
3,532,486 - PFLU_RS15695 0.28 -1.3
3,532,486 - PFLU_RS15695 0.28 -0.4
3,532,487 + PFLU_RS15695 0.28 +2.4
3,532,487 + PFLU_RS15695 0.28 -1.3
3,532,487 + PFLU_RS15695 0.28 +0.0
3,532,487 + PFLU_RS15695 0.28 +0.7
3,532,487 + PFLU_RS15695 0.28 +0.0
3,532,487 + PFLU_RS15695 0.28 -1.0
3,532,488 - PFLU_RS15695 0.28 +0.5
3,532,488 - PFLU_RS15695 0.28 -0.7
3,532,488 - PFLU_RS15695 0.28 -0.4
3,532,488 - PFLU_RS15695 0.28 -0.4
3,532,488 - PFLU_RS15695 0.28 -0.5
3,532,488 - PFLU_RS15695 0.28 -0.3
3,532,488 - PFLU_RS15695 0.28 -0.1
3,532,488 - PFLU_RS15695 0.28 -0.8
3,532,488 - PFLU_RS15695 0.28 +0.7
3,532,530 + PFLU_RS15695 0.32 +2.0
3,532,530 + PFLU_RS15695 0.32 -2.2
3,532,530 + PFLU_RS15695 0.32 +0.7
3,532,530 + PFLU_RS15695 0.32 +0.4
3,532,531 - PFLU_RS15695 0.32 +1.2
3,532,531 - PFLU_RS15695 0.32 -0.4
3,532,531 - PFLU_RS15695 0.32 +2.6
3,532,531 - PFLU_RS15695 0.32 +0.9
3,532,531 - PFLU_RS15695 0.32 +2.0
3,532,531 - PFLU_RS15695 0.32 -1.2
3,532,587 + PFLU_RS15695 0.38 -0.5
3,532,588 - PFLU_RS15695 0.38 -1.5
3,532,588 - PFLU_RS15695 0.38 +0.6
3,532,620 + PFLU_RS15695 0.41 +0.0
3,532,620 + PFLU_RS15695 0.41 +0.7
3,532,620 + PFLU_RS15695 0.41 -0.4
3,532,621 - PFLU_RS15695 0.41 -0.5
3,532,621 - PFLU_RS15695 0.41 +1.0
3,532,621 - PFLU_RS15695 0.41 +0.9
3,532,734 + PFLU_RS15695 0.52 -0.2
3,532,735 - PFLU_RS15695 0.52 -0.9
3,532,735 - PFLU_RS15695 0.52 -0.2
3,532,742 + PFLU_RS15695 0.53 -1.5
3,532,742 + PFLU_RS15695 0.53 +0.8
3,532,742 + PFLU_RS15695 0.53 +0.3
3,532,742 + PFLU_RS15695 0.53 -1.5
3,532,742 + PFLU_RS15695 0.53 +1.7
3,532,742 + PFLU_RS15695 0.53 +0.0
3,532,742 + PFLU_RS15695 0.53 -2.3
3,532,743 - PFLU_RS15695 0.53 -0.7
3,532,747 - PFLU_RS15695 0.53 -0.4
3,532,815 + PFLU_RS15695 0.60 -0.8
3,532,816 - PFLU_RS15695 0.60 +0.5
3,532,894 + PFLU_RS15695 0.67 +0.7
3,533,028 + PFLU_RS15695 0.80 -0.3
3,533,029 - PFLU_RS15695 0.80 +0.0
3,533,029 - PFLU_RS15695 0.80 -0.5
3,533,082 + PFLU_RS15695 0.85 +0.5
3,533,295 + +0.5
3,533,743 + PFLU_RS15700 0.16 -1.1
3,534,160 + PFLU_RS15700 0.29 +0.7
3,534,160 + PFLU_RS15700 0.29 +2.5
3,534,160 + PFLU_RS15700 0.29 +0.7
3,534,161 - PFLU_RS15700 0.30 -0.2
3,534,161 - PFLU_RS15700 0.30 -0.4
3,534,161 - PFLU_RS15700 0.30 +0.0
3,534,161 - PFLU_RS15700 0.30 +1.3
3,534,163 + PFLU_RS15700 0.30 -0.1
3,534,164 - PFLU_RS15700 0.30 -0.6
3,534,164 - PFLU_RS15700 0.30 +1.0
3,534,164 - PFLU_RS15700 0.30 +0.4
3,534,164 - PFLU_RS15700 0.30 -1.3
3,534,164 - PFLU_RS15700 0.30 -1.5
3,534,164 - PFLU_RS15700 0.30 +2.2
3,534,164 - PFLU_RS15700 0.30 +0.8
3,534,164 - PFLU_RS15700 0.30 +0.5
3,534,307 + PFLU_RS15700 0.34 +0.0
3,534,307 + PFLU_RS15700 0.34 -1.8
3,534,307 + PFLU_RS15700 0.34 -0.6
3,534,307 + PFLU_RS15700 0.34 -0.3
3,534,307 + PFLU_RS15700 0.34 +2.6
3,534,307 + PFLU_RS15700 0.34 +0.5
3,534,308 - PFLU_RS15700 0.34 -2.4
3,534,308 - PFLU_RS15700 0.34 +0.3
3,534,308 - PFLU_RS15700 0.34 +1.5
3,534,308 - PFLU_RS15700 0.34 -0.7
3,534,308 - PFLU_RS15700 0.34 +0.8
3,534,308 - PFLU_RS15700 0.34 +0.6
3,534,473 + PFLU_RS15700 0.40 +0.3
3,534,473 + PFLU_RS15700 0.40 +1.5
3,534,474 - PFLU_RS15700 0.40 -3.3
3,534,474 - PFLU_RS15700 0.40 +2.0
3,534,518 + PFLU_RS15700 0.41 -0.8
3,534,518 + PFLU_RS15700 0.41 -0.3
3,534,518 + PFLU_RS15700 0.41 -0.2
3,534,519 - PFLU_RS15700 0.41 -0.1
3,534,519 - PFLU_RS15700 0.41 -0.2
3,534,565 + PFLU_RS15700 0.43 +0.9
3,534,566 - PFLU_RS15700 0.43 +2.0
3,534,712 + PFLU_RS15700 0.48 -2.4
3,534,712 + PFLU_RS15700 0.48 +1.4
3,534,712 + PFLU_RS15700 0.48 -1.1
3,534,712 + PFLU_RS15700 0.48 +0.7
3,534,712 + PFLU_RS15700 0.48 +1.0
3,534,712 + PFLU_RS15700 0.48 +1.2
3,534,713 - PFLU_RS15700 0.48 -1.2
3,534,734 - PFLU_RS15700 0.49 -0.1
3,534,754 + PFLU_RS15700 0.49 -0.3
3,534,754 + PFLU_RS15700 0.49 -1.3
3,534,755 - PFLU_RS15700 0.49 +0.5
3,534,755 - PFLU_RS15700 0.49 +0.5
3,534,755 - PFLU_RS15700 0.49 -0.2
3,534,908 - PFLU_RS15700 0.54 -0.0
3,534,916 + PFLU_RS15700 0.55 +0.1
3,534,916 + PFLU_RS15700 0.55 -0.1
3,534,916 + PFLU_RS15700 0.55 +0.2
3,534,916 + PFLU_RS15700 0.55 -1.6
3,534,917 - PFLU_RS15700 0.55 +0.7
3,534,917 - PFLU_RS15700 0.55 -1.7
3,534,917 - PFLU_RS15700 0.55 -0.4
3,534,917 - PFLU_RS15700 0.55 +0.7
3,534,976 + PFLU_RS15700 0.57 +0.3
3,534,977 - PFLU_RS15700 0.57 -2.1
3,534,977 - PFLU_RS15700 0.57 +1.0
3,534,977 - PFLU_RS15700 0.57 -0.1
3,535,003 + PFLU_RS15700 0.57 -2.1
3,535,004 - PFLU_RS15700 0.58 +0.2
3,535,198 + PFLU_RS15700 0.64 +0.3
3,535,199 - PFLU_RS15700 0.64 +1.0
3,535,330 + PFLU_RS15700 0.68 +0.6
3,535,363 + PFLU_RS15700 0.69 +0.0
3,535,363 + PFLU_RS15700 0.69 +1.0
3,535,364 - PFLU_RS15700 0.69 +0.2
3,535,370 + PFLU_RS15700 0.70 +0.5
3,535,370 + PFLU_RS15700 0.70 -1.5
3,535,370 + PFLU_RS15700 0.70 +0.4
3,535,370 + PFLU_RS15700 0.70 -0.3
3,535,371 - PFLU_RS15700 0.70 -0.5
3,535,371 - PFLU_RS15700 0.70 -0.5
3,535,371 - PFLU_RS15700 0.70 +0.4
3,535,768 + PFLU_RS15700 0.83 +0.7
3,535,768 + PFLU_RS15700 0.83 +1.5
3,535,768 + PFLU_RS15700 0.83 +0.0
3,535,768 + PFLU_RS15700 0.83 +0.5
3,535,768 + PFLU_RS15700 0.83 -1.0
3,535,789 + PFLU_RS15700 0.84 +0.5
3,535,843 + PFLU_RS15700 0.85 +0.4
3,535,843 + PFLU_RS15700 0.85 -0.6
3,535,843 + PFLU_RS15700 0.85 +0.2
3,535,843 + PFLU_RS15700 0.85 +0.8
3,535,844 - PFLU_RS15700 0.85 +0.4
3,535,844 - PFLU_RS15700 0.85 -0.5
3,535,844 - PFLU_RS15700 0.85 +0.5
3,536,071 - -2.1
3,536,438 + +0.2
3,536,751 - +0.6
3,536,751 - +0.6
3,536,797 + -1.5
3,536,798 - +0.6
3,536,798 - -0.2
3,536,832 - +0.2
3,536,854 + +1.3
3,536,855 - -0.9
3,536,855 - +0.0
3,536,891 + +0.7
3,536,891 + -0.7
3,536,891 + +0.0
3,536,892 - +0.5
3,536,892 - +0.3
3,536,892 - -1.3
3,536,998 - -0.4
3,537,112 + +0.2
3,537,152 + +0.2

Or see this region's nucleotide sequence