Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS15290

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
3,424,295	-		PFLU_RS15285	0.29	-0.8
3,424,295	-		PFLU_RS15285	0.29	+1.3
3,424,295	-		PFLU_RS15285	0.29	+0.2
3,424,295	-		PFLU_RS15285	0.29	-0.3
3,424,295	-		PFLU_RS15285	0.29	+0.2
3,424,302	+		PFLU_RS15285	0.30	-0.6
3,424,302	+		PFLU_RS15285	0.30	-1.0
3,424,303	-		PFLU_RS15285	0.30	-2.1
3,424,303	-		PFLU_RS15285	0.30	+1.5
3,424,342	+		PFLU_RS15285	0.33	+0.4
3,424,342	+		PFLU_RS15285	0.33	-0.7
3,424,342	+		PFLU_RS15285	0.33	+1.3
3,424,342	+		PFLU_RS15285	0.33	+0.2
3,424,342	+		PFLU_RS15285	0.33	+1.0
3,424,343	-		PFLU_RS15285	0.33	-0.4
3,424,343	-		PFLU_RS15285	0.33	-2.3
3,424,343	-		PFLU_RS15285	0.33	+0.2
3,424,343	-		PFLU_RS15285	0.33	-1.0
3,424,343	-		PFLU_RS15285	0.33	+1.3
3,424,343	-		PFLU_RS15285	0.33	-0.2
3,424,345	+		PFLU_RS15285	0.33	+1.3
3,424,345	+		PFLU_RS15285	0.33	+0.5
3,424,345	+		PFLU_RS15285	0.33	-1.0
3,424,346	-		PFLU_RS15285	0.33	+2.0
3,424,346	-		PFLU_RS15285	0.33	+1.0
3,424,346	-		PFLU_RS15285	0.33	-0.0
3,424,346	-		PFLU_RS15285	0.33	+0.8
3,424,346	-		PFLU_RS15285	0.33	+1.0
3,424,388	-		PFLU_RS15285	0.36	+0.1
3,424,388	-		PFLU_RS15285	0.36	+0.6
3,424,388	-		PFLU_RS15285	0.36	-0.1
3,424,388	-		PFLU_RS15285	0.36	+0.1
3,424,388	-		PFLU_RS15285	0.36	-0.1
3,424,388	-		PFLU_RS15285	0.36	-0.1
3,424,388	-		PFLU_RS15285	0.36	-0.2
3,424,404	+		PFLU_RS15285	0.37	-1.5
3,424,494	+		PFLU_RS15285	0.43	-0.6
3,424,494	+		PFLU_RS15285	0.43	-1.0
3,424,495	-		PFLU_RS15285	0.43	+0.3
3,424,495	-		PFLU_RS15285	0.43	-0.0
3,424,687	+		PFLU_RS15285	0.57	+0.8
3,424,695	+		PFLU_RS15285	0.58	+0.4
3,424,696	-		PFLU_RS15285	0.58	-0.6
3,424,771	+		PFLU_RS15285	0.63	-0.6
3,424,838	-		PFLU_RS15285	0.68	+1.2
3,424,838	-		PFLU_RS15285	0.68	-1.8
3,424,838	-		PFLU_RS15285	0.68	+2.7
3,424,838	-		PFLU_RS15285	0.68	+0.3
3,424,838	-		PFLU_RS15285	0.68	+0.9
3,424,843	+		PFLU_RS15285	0.68	+1.5
3,424,844	-		PFLU_RS15285	0.68	+1.6
3,424,844	-		PFLU_RS15285	0.68	-1.0
3,424,844	-		PFLU_RS15285	0.68	-0.6
3,424,844	-		PFLU_RS15285	0.68	-0.1
3,424,868	-		PFLU_RS15285	0.70	-0.2
3,424,889	+		PFLU_RS15285	0.71	-0.1
3,424,890	-		PFLU_RS15285	0.71	+0.8
3,424,898	+		PFLU_RS15285	0.72	+0.5
3,425,074	+		PFLU_RS15285	0.84	-0.2
3,425,074	+		PFLU_RS15285	0.84	-0.9
3,425,074	+		PFLU_RS15285	0.84	-0.1
3,425,075	-		PFLU_RS15285	0.85	-0.3
3,425,075	-		PFLU_RS15285	0.85	+0.2
3,425,075	-		PFLU_RS15285	0.85	-0.7
3,425,294	+				+0.5
3,425,294	+				-0.2
3,425,294	+				+0.3
3,425,294	+				-0.4
3,425,294	+				-1.4
3,425,294	+				-0.7
3,425,295	-				-0.6
3,425,295	-				+0.2
3,425,295	-				-0.2
3,425,295	-				-0.6
3,425,295	-				-0.8
3,425,295	-				-0.0
3,425,295	-				-1.2
3,425,303	+				-0.0
3,425,304	-				-0.7
3,425,304	-				-0.6
3,425,472	+		PFLU_RS15290	0.19	-1.0
3,425,472	+		PFLU_RS15290	0.19	-0.4
3,425,472	+		PFLU_RS15290	0.19	-1.8
3,425,473	-		PFLU_RS15290	0.19	-0.5
3,425,473	-		PFLU_RS15290	0.19	-1.3
3,425,486	+		PFLU_RS15290	0.20	-0.8
3,425,486	+		PFLU_RS15290	0.20	+0.6
3,425,486	+		PFLU_RS15290	0.20	+0.2
3,425,487	-		PFLU_RS15290	0.20	+1.0
3,425,553	+		PFLU_RS15290	0.27	+0.4
3,425,553	+		PFLU_RS15290	0.27	-0.0
3,425,553	+		PFLU_RS15290	0.27	+1.4
3,425,553	+		PFLU_RS15290	0.27	+0.4
3,425,553	+		PFLU_RS15290	0.27	-0.5
3,425,554	-		PFLU_RS15290	0.27	+0.7
3,425,554	-		PFLU_RS15290	0.27	-0.8
3,425,842	-		PFLU_RS15290	0.58	+1.1
3,425,895	+		PFLU_RS15290	0.63	-1.2
3,425,943	+		PFLU_RS15290	0.68	-0.2
3,425,944	-		PFLU_RS15290	0.68	-2.0
3,425,944	-		PFLU_RS15290	0.68	-0.6
3,425,944	-		PFLU_RS15290	0.68	+0.1
3,425,944	-		PFLU_RS15290	0.68	-0.9
3,426,053	+		PFLU_RS15290	0.80	-0.2
3,426,078	+		PFLU_RS15290	0.82	+0.1
3,426,078	+		PFLU_RS15290	0.82	-0.9
3,426,130	-		PFLU_RS15290	0.88	+1.0
3,426,244	-				-1.9
3,426,244	-				+1.1
3,426,244	-				+0.8
3,426,244	-				-0.0
3,426,244	-				-1.2
3,426,244	-				-0.2
3,426,546	+		PFLU_RS15295	0.32	+1.1
3,426,546	+		PFLU_RS15295	0.32	+0.1
3,426,547	-		PFLU_RS15295	0.32	+0.8
3,426,547	-		PFLU_RS15295	0.32	-0.0
3,426,547	-		PFLU_RS15295	0.32	-0.8
3,426,676	+		PFLU_RS15295	0.46	+2.0
3,426,677	-		PFLU_RS15295	0.46	-0.3
3,426,677	-		PFLU_RS15295	0.46	+0.6
3,426,677	-		PFLU_RS15295	0.46	+0.8
3,426,677	-		PFLU_RS15295	0.46	-1.0
3,426,729	+		PFLU_RS15295	0.52	+0.4
3,426,738	+		PFLU_RS15295	0.53	+0.3
3,426,738	+		PFLU_RS15295	0.53	+0.3
3,426,738	+		PFLU_RS15295	0.53	-1.1
3,426,738	+		PFLU_RS15295	0.53	-0.8
3,426,738	+		PFLU_RS15295	0.53	-0.1
3,426,738	+		PFLU_RS15295	0.53	+0.6
3,426,738	+		PFLU_RS15295	0.53	+0.3
3,426,738	+		PFLU_RS15295	0.53	+0.6
3,426,738	+		PFLU_RS15295	0.53	-0.3
3,426,738	+		PFLU_RS15295	0.53	-0.4
3,426,739	-		PFLU_RS15295	0.53	+1.5
3,426,739	-		PFLU_RS15295	0.53	+0.2
3,426,739	-		PFLU_RS15295	0.53	+1.6
3,426,739	-		PFLU_RS15295	0.53	+0.7
3,426,739	-		PFLU_RS15295	0.53	-1.2
3,426,739	-		PFLU_RS15295	0.53	-0.2
3,426,739	-		PFLU_RS15295	0.53	-0.1
3,426,739	-		PFLU_RS15295	0.53	+0.2
3,426,739	-		PFLU_RS15295	0.53	-0.8
3,426,739	-		PFLU_RS15295	0.53	+1.0
3,426,739	-		PFLU_RS15295	0.53	+1.3
3,426,739	-		PFLU_RS15295	0.53	-0.1
3,426,739	-		PFLU_RS15295	0.53	+0.6
3,426,739	-		PFLU_RS15295	0.53	-1.8
3,426,739	-		PFLU_RS15295	0.53	-0.2
3,426,739	-		PFLU_RS15295	0.53	-0.2
3,426,756	+		PFLU_RS15295	0.55	-0.7
3,426,966	+		PFLU_RS15295	0.77	-1.4
3,426,967	-		PFLU_RS15295	0.77	+0.3
3,427,145	+				-0.1
3,427,146	-				-2.7