Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS10670

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
2,349,968	+		PFLU_RS10665	0.61	+0.7
2,349,968	+		PFLU_RS10665	0.61	+0.5
2,349,968	+		PFLU_RS10665	0.61	+1.2
2,349,969	-		PFLU_RS10665	0.61	+1.3
2,349,969	-		PFLU_RS10665	0.61	-1.6
2,349,969	-		PFLU_RS10665	0.61	-0.5
2,349,969	-		PFLU_RS10665	0.61	+0.5
2,349,969	-		PFLU_RS10665	0.61	-1.6
2,349,969	-		PFLU_RS10665	0.61	-0.3
2,350,014	+		PFLU_RS10665	0.64	+0.7
2,350,053	+		PFLU_RS10665	0.67	+1.1
2,350,053	+		PFLU_RS10665	0.67	-1.2
2,350,054	-		PFLU_RS10665	0.67	-0.5
2,350,054	-		PFLU_RS10665	0.67	+0.5
2,350,231	+		PFLU_RS10665	0.79	-0.5
2,350,308	+		PFLU_RS10665	0.84	+0.5
2,350,309	-		PFLU_RS10665	0.84	-0.9
2,350,320	-		PFLU_RS10665	0.85	+1.2
2,350,493	+				-1.2
2,350,493	+				-0.8
2,350,494	-				+0.2
2,350,494	-				+0.4
2,350,494	-				-0.6
2,350,546	+				+0.2
2,350,546	+				+0.7
2,350,546	+				-1.5
2,350,546	+				+0.7
2,350,546	+				+0.1
2,350,547	-				+0.3
2,350,547	-				+1.5
2,350,577	+				+0.6
2,350,642	+				+0.1
2,350,643	-				-0.1
2,350,643	-				+0.2
2,350,643	-				-0.6
2,350,672	+				+1.0
2,350,672	+				+0.7
2,350,672	+				-1.1
2,350,672	+				-1.2
2,350,673	-				+1.1
2,350,673	-				-0.8
2,350,723	+				-0.2
2,350,723	+				+0.0
2,350,724	-				-0.2
2,350,743	+				+0.8
2,350,743	+				-1.2
2,350,743	+				+0.0
2,350,744	-				+0.3
2,350,744	-				+1.9
2,350,756	+				+0.5
2,350,756	+				-1.1
2,350,757	-				+0.3
2,350,831	+				+1.3
2,350,831	+				-0.3
2,350,831	+				+0.1
2,350,831	+				-0.4
2,350,832	-				+1.0
2,350,832	-				+0.1
2,350,838	+				+0.7
2,350,839	-				-0.1
2,351,238	+		PFLU_RS10670	0.51	-1.5
2,351,239	-		PFLU_RS10670	0.51	-0.7
2,351,506	+		PFLU_RS10670	0.79	+1.5
2,351,506	+		PFLU_RS10670	0.79	-0.1
2,351,506	+		PFLU_RS10670	0.79	-0.2
2,351,507	-		PFLU_RS10670	0.79	+0.5
2,351,507	-		PFLU_RS10670	0.79	-1.6
2,351,507	-		PFLU_RS10670	0.79	+0.4
2,351,507	-		PFLU_RS10670	0.79	+0.7
2,351,507	-		PFLU_RS10670	0.79	-1.3
2,351,518	+		PFLU_RS10670	0.80	+1.0
2,351,518	+		PFLU_RS10670	0.80	-0.1
2,351,519	-		PFLU_RS10670	0.80	-0.8
2,351,710	+				+0.3
2,351,764	+				+0.5
2,351,764	+				+0.2
2,351,783	+				-0.0
2,351,799	+				+0.9
2,351,799	+				+1.2
2,351,800	-				-0.0
2,351,800	-				-0.4
2,351,800	-				+1.1
2,351,805	+				+0.9
2,351,805	+				+0.4
2,351,806	-				+0.7
2,351,806	-				-1.0
2,351,852	+				+0.2
2,351,853	-				+1.3
2,351,944	+		PFLU_RS10675	0.19	-2.2
2,351,945	-		PFLU_RS10675	0.19	-0.1
2,351,945	-		PFLU_RS10675	0.19	-0.3
2,352,010	+		PFLU_RS10675	0.30	+0.7
2,352,010	+		PFLU_RS10675	0.30	+0.8
2,352,010	+		PFLU_RS10675	0.30	+0.5
2,352,010	+		PFLU_RS10675	0.30	-0.5
2,352,011	-		PFLU_RS10675	0.30	-0.8
2,352,011	-		PFLU_RS10675	0.30	-1.6
2,352,011	-		PFLU_RS10675	0.30	+1.1
2,352,011	-		PFLU_RS10675	0.30	-0.7
2,352,011	-		PFLU_RS10675	0.30	-0.3
2,352,011	-		PFLU_RS10675	0.30	-0.2
2,352,011	-		PFLU_RS10675	0.30	+0.1
2,352,011	-		PFLU_RS10675	0.30	+0.2
2,352,055	+		PFLU_RS10675	0.37	-1.3
2,352,055	+		PFLU_RS10675	0.37	-1.3
2,352,056	-		PFLU_RS10675	0.37	-0.9
2,352,056	-		PFLU_RS10675	0.37	+0.9
2,352,209	-		PFLU_RS10675	0.62	+1.2
2,352,209	-		PFLU_RS10675	0.62	-0.2
2,352,223	+		PFLU_RS10675	0.64	-0.8
2,352,223	+		PFLU_RS10675	0.64	+2.1
2,352,223	+		PFLU_RS10675	0.64	+0.1
2,352,223	+		PFLU_RS10675	0.64	+0.3
2,352,223	+		PFLU_RS10675	0.64	+1.0
2,352,223	+		PFLU_RS10675	0.64	-0.8
2,352,223	+		PFLU_RS10675	0.64	+0.2
2,352,224	-		PFLU_RS10675	0.64	+0.1
2,352,224	-		PFLU_RS10675	0.64	+0.3
2,352,224	-		PFLU_RS10675	0.64	+0.1
2,352,224	-		PFLU_RS10675	0.64	+2.7
2,352,224	-		PFLU_RS10675	0.64	-0.7
2,352,242	-		PFLU_RS10675	0.67	+0.5
2,352,247	+		PFLU_RS10675	0.68	+0.3
2,352,247	+		PFLU_RS10675	0.68	+1.0
2,352,248	-		PFLU_RS10675	0.68	+1.1
2,352,248	-		PFLU_RS10675	0.68	-1.0
2,352,266	-		PFLU_RS10675	0.71	+0.3
2,352,274	+		PFLU_RS10675	0.72	-0.0
2,352,274	+		PFLU_RS10675	0.72	+0.4
2,352,275	-		PFLU_RS10675	0.73	-1.2
2,352,310	+		PFLU_RS10675	0.78	+1.9
2,352,310	+		PFLU_RS10675	0.78	+0.2
2,352,310	+		PFLU_RS10675	0.78	+0.1
2,352,310	+		PFLU_RS10675	0.78	+0.2
2,352,311	-		PFLU_RS10675	0.78	+0.7
2,352,311	-		PFLU_RS10675	0.78	-0.3
2,352,370	+		PFLU_RS10675	0.88	+0.3
2,352,370	+		PFLU_RS10675	0.88	+0.2
2,352,370	+		PFLU_RS10675	0.88	-0.2
2,352,370	+		PFLU_RS10675	0.88	+1.1
2,352,370	+		PFLU_RS10675	0.88	-0.1
2,352,370	+		PFLU_RS10675	0.88	-0.3
2,352,370	+		PFLU_RS10675	0.88	-0.2
2,352,370	+		PFLU_RS10675	0.88	-1.4
2,352,370	+		PFLU_RS10675	0.88	+0.6
2,352,370	+		PFLU_RS10675	0.88	+0.8
2,352,370	+		PFLU_RS10675	0.88	-0.2
2,352,370	+		PFLU_RS10675	0.88	-0.5
2,352,370	+		PFLU_RS10675	0.88	-2.1
2,352,370	+		PFLU_RS10675	0.88	+0.1
2,352,370	+		PFLU_RS10675	0.88	-0.5
2,352,370	+		PFLU_RS10675	0.88	+0.4
2,352,371	-		PFLU_RS10675	0.88	+0.3
2,352,371	-		PFLU_RS10675	0.88	+0.6
2,352,371	-		PFLU_RS10675	0.88	+0.4
2,352,371	-		PFLU_RS10675	0.88	+0.4
2,352,371	-		PFLU_RS10675	0.88	-1.0
2,352,371	-		PFLU_RS10675	0.88	-0.1
2,352,371	-		PFLU_RS10675	0.88	+1.5
2,352,371	-		PFLU_RS10675	0.88	-0.4
2,352,371	-		PFLU_RS10675	0.88	+0.3
2,352,383	-				-0.0
2,352,393	+				+0.1
2,352,393	+				-0.0
2,352,393	+				+0.3
2,352,393	+				+0.3
2,352,393	+				-0.6
2,352,394	-				-0.7
2,352,394	-				+0.1
2,352,498	+				-1.3
2,352,499	-				-0.2
2,352,499	-				-0.8
2,352,499	-				-2.0
2,352,499	-				+0.2
2,352,510	-				-0.4
2,352,519	-				-0.7
2,352,519	-				-0.7
2,352,530	+				+0.8
2,352,531	-				-0.4
2,352,531	-				-0.7
2,352,531	-				+0.1
2,352,541	+				+1.0
2,352,565	+				-0.0
2,352,565	+				+0.5
2,352,565	+				+0.4
2,352,565	+				+0.1
2,352,566	-				+0.6
2,352,566	-				+0.4
2,352,566	-				-0.9
2,352,566	-				-0.8
2,352,566	-				-0.3
2,352,566	-				-0.7
2,352,569	+				+0.0
2,352,569	+				+1.5
2,352,569	+				-0.8
2,352,569	+				+0.7
2,352,569	+				+0.1
2,352,569	+				-1.3
2,352,569	+				+0.9
2,352,569	+				-0.1
2,352,570	-				-0.0
2,352,570	-				+0.8
2,352,570	-				+0.2
2,352,570	-				-0.4
2,352,570	-				-0.5
2,352,570	-				-1.0
2,352,570	-				-0.3
2,352,571	+				+0.1
2,352,571	+				+0.3
2,352,572	-				-0.8
2,352,572	-				+0.1
2,352,573	+				+0.5
2,352,573	+				-0.6
2,352,573	+				+0.2
2,352,573	+				+0.2
2,352,573	+				+0.0
2,352,573	+				-1.0
2,352,573	+				+0.9
2,352,573	+				-0.3
2,352,573	+				+0.4
2,352,573	+				+0.3
2,352,573	+				+0.1
2,352,574	-				-0.2
2,352,574	-				-0.1
2,352,574	-				+0.0
2,352,574	-				-1.4
2,352,574	-				-0.6
2,352,574	-				-0.8
2,352,574	-				-1.5
2,352,574	-				+0.5
2,352,574	-				-0.8
2,352,574	-				+1.0
2,352,587	+				-0.7
2,352,587	+				+1.1
2,352,673	+		PFLU_RS10680	0.17	-0.1
2,352,673	+		PFLU_RS10680	0.17	-0.4
2,352,673	+		PFLU_RS10680	0.17	-0.1
2,352,673	+		PFLU_RS10680	0.17	+0.6
2,352,674	-		PFLU_RS10680	0.17	-0.2
2,352,674	-		PFLU_RS10680	0.17	-0.2
2,352,674	-		PFLU_RS10680	0.17	+0.4
2,352,674	-		PFLU_RS10680	0.17	+0.7
2,352,674	-		PFLU_RS10680	0.17	+0.5
2,352,674	-		PFLU_RS10680	0.17	+0.5
2,352,674	-		PFLU_RS10680	0.17	+0.3
2,352,689	+		PFLU_RS10680	0.19	-0.5
2,352,689	+		PFLU_RS10680	0.19	+0.2
2,352,689	+		PFLU_RS10680	0.19	-0.4
2,352,689	+		PFLU_RS10680	0.19	-0.0
2,352,690	-		PFLU_RS10680	0.19	-0.3
2,352,690	-		PFLU_RS10680	0.19	-1.6
2,352,690	-		PFLU_RS10680	0.19	-0.3
2,352,690	-		PFLU_RS10680	0.19	+0.3