Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06720

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
1,501,297	+		PFLU_RS06715	0.32	+0.0
1,501,297	+		PFLU_RS06715	0.32	-0.3
1,501,297	+		PFLU_RS06715	0.32	+0.7
1,501,298	-		PFLU_RS06715	0.32	+0.0
1,501,298	-		PFLU_RS06715	0.32	+0.7
1,501,298	-		PFLU_RS06715	0.32	-0.2
1,501,304	+		PFLU_RS06715	0.33	-0.8
1,501,336	+		PFLU_RS06715	0.36	+0.6
1,501,336	+		PFLU_RS06715	0.36	+1.6
1,501,336	+		PFLU_RS06715	0.36	+0.0
1,501,337	-		PFLU_RS06715	0.36	-0.7
1,501,337	-		PFLU_RS06715	0.36	+0.3
1,501,375	+		PFLU_RS06715	0.41	+0.5
1,501,447	+		PFLU_RS06715	0.49	-0.3
1,501,447	+		PFLU_RS06715	0.49	-0.6
1,501,447	+		PFLU_RS06715	0.49	+1.0
1,501,447	+		PFLU_RS06715	0.49	+0.1
1,501,447	+		PFLU_RS06715	0.49	-0.3
1,501,447	+		PFLU_RS06715	0.49	-1.7
1,501,447	+		PFLU_RS06715	0.49	-0.5
1,501,447	+		PFLU_RS06715	0.49	+1.8
1,501,447	+		PFLU_RS06715	0.49	+0.5
1,501,447	+		PFLU_RS06715	0.49	+0.2
1,501,447	+		PFLU_RS06715	0.49	-0.7
1,501,447	+		PFLU_RS06715	0.49	-0.0
1,501,447	+		PFLU_RS06715	0.49	-1.4
1,501,447	-		PFLU_RS06715	0.49	+0.5
1,501,448	-		PFLU_RS06715	0.50	+0.7
1,501,448	-		PFLU_RS06715	0.50	+0.6
1,501,448	-		PFLU_RS06715	0.50	-1.5
1,501,448	-		PFLU_RS06715	0.50	+0.5
1,501,448	-		PFLU_RS06715	0.50	-0.8
1,501,448	-		PFLU_RS06715	0.50	-0.4
1,501,519	+		PFLU_RS06715	0.58	-0.7
1,501,520	-		PFLU_RS06715	0.58	-0.4
1,501,520	-		PFLU_RS06715	0.58	-0.2
1,501,520	-		PFLU_RS06715	0.58	+0.0
1,501,579	+		PFLU_RS06715	0.65	-1.6
1,501,579	+		PFLU_RS06715	0.65	+0.2
1,501,580	-		PFLU_RS06715	0.65	+1.1
1,501,580	-		PFLU_RS06715	0.65	+0.3
1,501,732	+		PFLU_RS06715	0.83	-0.1
1,501,871	-				-0.6
1,501,930	+				-1.7
1,501,930	+				-0.2
1,501,930	+				+1.7
1,501,930	+				+0.4
1,501,931	-				-0.4
1,501,931	-				+1.1
1,501,931	-				+0.9
1,501,931	-				+0.9
1,501,931	-				+0.5
1,501,931	-				+1.0
1,501,933	+				+1.0
1,501,933	+				+1.0
1,501,933	+				+1.3
1,501,933	+				-0.1
1,501,933	+				+0.6
1,501,934	-				-1.2
1,501,934	-				+0.3
1,501,934	-				+2.0
1,501,934	-				+0.3
1,501,934	-				-0.6
1,501,934	-				-1.7
1,501,934	-				+0.7
1,501,934	-				+0.8
1,501,965	+				-0.5
1,501,966	-				-1.7
1,501,969	-				-1.7
1,501,969	-				-0.2
1,502,011	-				+1.5
1,502,011	-				-1.1
1,502,017	-				+0.0
1,502,069	-				-0.5
1,502,161	+		PFLU_RS06720	0.11	-0.3
1,502,349	-		PFLU_RS06720	0.25	+0.1
1,502,349	-		PFLU_RS06720	0.25	+0.3
1,502,444	+		PFLU_RS06720	0.32	+0.2
1,502,444	+		PFLU_RS06720	0.32	-1.5
1,502,444	+		PFLU_RS06720	0.32	-0.4
1,502,444	+		PFLU_RS06720	0.32	-0.6
1,502,444	+		PFLU_RS06720	0.32	+0.3
1,502,444	+		PFLU_RS06720	0.32	+1.4
1,502,444	+		PFLU_RS06720	0.32	-0.6
1,502,445	-		PFLU_RS06720	0.32	-1.3
1,502,445	-		PFLU_RS06720	0.32	-1.0
1,502,640	-		PFLU_RS06720	0.46	-0.4
1,502,766	+		PFLU_RS06720	0.56	-1.0
1,502,767	-		PFLU_RS06720	0.56	-0.2
1,502,767	-		PFLU_RS06720	0.56	+0.1
1,502,767	-		PFLU_RS06720	0.56	+0.2
1,502,789	-		PFLU_RS06720	0.57	-0.8
1,502,792	+		PFLU_RS06720	0.58	+0.4
1,502,792	+		PFLU_RS06720	0.58	-0.2
1,502,792	+		PFLU_RS06720	0.58	+0.0
1,502,792	+		PFLU_RS06720	0.58	-0.5
1,502,792	+		PFLU_RS06720	0.58	-0.6
1,502,792	+		PFLU_RS06720	0.58	-0.4
1,502,792	+		PFLU_RS06720	0.58	+0.4
1,502,792	+		PFLU_RS06720	0.58	+1.3
1,502,792	+		PFLU_RS06720	0.58	-0.3
1,502,792	+		PFLU_RS06720	0.58	+0.1
1,502,792	+		PFLU_RS06720	0.58	+0.2
1,502,792	+		PFLU_RS06720	0.58	+0.2
1,502,792	+		PFLU_RS06720	0.58	+1.2
1,502,792	+		PFLU_RS06720	0.58	-0.6
1,502,792	+		PFLU_RS06720	0.58	-0.9
1,502,792	+		PFLU_RS06720	0.58	-0.1
1,502,793	-		PFLU_RS06720	0.58	+0.3
1,502,793	-		PFLU_RS06720	0.58	+0.8
1,502,793	-		PFLU_RS06720	0.58	-1.0
1,502,793	-		PFLU_RS06720	0.58	-1.7
1,502,793	-		PFLU_RS06720	0.58	+0.4
1,502,793	-		PFLU_RS06720	0.58	+1.6
1,502,793	-		PFLU_RS06720	0.58	-0.5
1,502,793	-		PFLU_RS06720	0.58	+0.7
1,502,793	-		PFLU_RS06720	0.58	-0.0
1,502,793	-		PFLU_RS06720	0.58	-0.3
1,502,793	-		PFLU_RS06720	0.58	-0.7
1,502,793	-		PFLU_RS06720	0.58	-1.1
1,502,825	+		PFLU_RS06720	0.60	+0.1
1,502,825	+		PFLU_RS06720	0.60	+0.7
1,502,825	+		PFLU_RS06720	0.60	+0.4
1,502,825	+		PFLU_RS06720	0.60	-0.6
1,502,825	+		PFLU_RS06720	0.60	-0.6
1,502,826	-		PFLU_RS06720	0.60	+2.4
1,502,826	-		PFLU_RS06720	0.60	+0.7
1,502,826	-		PFLU_RS06720	0.60	+0.9
1,502,826	-		PFLU_RS06720	0.60	-0.5
1,502,826	-		PFLU_RS06720	0.60	-1.1
1,502,826	-		PFLU_RS06720	0.60	-0.3
1,502,826	-		PFLU_RS06720	0.60	+0.4
1,502,826	-		PFLU_RS06720	0.60	+0.4
1,502,826	-		PFLU_RS06720	0.60	+0.8
1,502,850	-		PFLU_RS06720	0.62	-1.9
1,502,918	-		PFLU_RS06720	0.67	+0.2
1,502,918	-		PFLU_RS06720	0.67	+0.8
1,503,014	+		PFLU_RS06720	0.74	-1.0
1,503,014	+		PFLU_RS06720	0.74	+0.2
1,503,014	+		PFLU_RS06720	0.74	+0.1
1,503,014	+		PFLU_RS06720	0.74	+0.3
1,503,015	-		PFLU_RS06720	0.74	+0.5
1,503,015	-		PFLU_RS06720	0.74	-1.0
1,503,015	-		PFLU_RS06720	0.74	+1.3
1,503,039	-		PFLU_RS06720	0.76	+0.5
1,503,152	+		PFLU_RS06720	0.85	-0.8
1,503,353	-				-0.1
1,503,353	-				-0.6
1,503,482	+				+0.3
1,503,482	+				-0.4
1,503,482	+				+0.8
1,503,483	-				+0.7
1,503,483	-				+0.3
1,503,483	-				+0.6
1,503,485	+				+0.1
1,503,486	-				+1.5
1,503,486	-				+0.5
1,503,486	-				+0.2
1,503,486	-				+0.6
1,503,489	+				+0.8
1,503,490	-				+0.7
1,503,558	+				-0.6
1,503,558	+				+0.8
1,503,558	+				+0.2
1,503,559	-				+1.6
1,503,700	+				+0.4
1,503,715	+		PFLU_RS06725	0.11	-0.2
1,503,736	-		PFLU_RS06725	0.13	-1.1
1,503,772	+		PFLU_RS06725	0.17	-0.4
1,503,772	+		PFLU_RS06725	0.17	+1.1
1,503,772	+		PFLU_RS06725	0.17	-1.6
1,503,773	-		PFLU_RS06725	0.17	-3.2
1,503,773	-		PFLU_RS06725	0.17	+1.0
1,503,791	+		PFLU_RS06725	0.20	+0.8
1,503,791	+		PFLU_RS06725	0.20	-0.2
1,503,792	-		PFLU_RS06725	0.20	-0.0
1,503,792	-		PFLU_RS06725	0.20	+0.5
1,503,792	-		PFLU_RS06725	0.20	+0.5
1,503,792	-		PFLU_RS06725	0.20	+0.1
1,503,953	+		PFLU_RS06725	0.38	+0.0
1,503,953	+		PFLU_RS06725	0.38	-0.5
1,503,953	+		PFLU_RS06725	0.38	-0.8
1,503,953	+		PFLU_RS06725	0.38	-1.3
1,503,953	+		PFLU_RS06725	0.38	-0.7
1,503,954	-		PFLU_RS06725	0.39	+0.8
1,503,954	-		PFLU_RS06725	0.39	-1.6
1,504,138	+		PFLU_RS06725	0.60	+1.3
1,504,138	+		PFLU_RS06725	0.60	-0.3
1,504,139	-		PFLU_RS06725	0.60	+0.5
1,504,293	+		PFLU_RS06725	0.78	+0.2
1,504,316	+		PFLU_RS06725	0.81	-1.0
1,504,316	+		PFLU_RS06725	0.81	+1.0
1,504,316	+		PFLU_RS06725	0.81	-0.7
1,504,329	-		PFLU_RS06725	0.82	-0.2
1,504,329	-		PFLU_RS06725	0.82	-0.7
1,504,330	+		PFLU_RS06725	0.82	+0.4
1,504,352	+		PFLU_RS06725	0.85	-0.2
1,504,353	-		PFLU_RS06725	0.85	-1.9
1,504,353	-		PFLU_RS06725	0.85	+0.4
1,504,353	-		PFLU_RS06725	0.85	-0.2