Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05885

Experiment: succinate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS05875 and PFLU_RS05880 are separated by 81 nucleotidesPFLU_RS05880 and PFLU_RS05885 are separated by 84 nucleotidesPFLU_RS05885 and PFLU_RS05890 are separated by 8 nucleotidesPFLU_RS05890 and PFLU_RS31430 are separated by 53 nucleotidesPFLU_RS31430 and PFLU_RS05895 overlap by 71 nucleotides PFLU_RS05875: PFLU_RS05875 - lysozyme, at 1,316,948 to 1,317,448 _RS05875 PFLU_RS05880: PFLU_RS05880 - CinA family protein, at 1,317,530 to 1,318,030 _RS05880 PFLU_RS05885: PFLU_RS05885 - recombinase RecA, at 1,318,115 to 1,319,173 _RS05885 PFLU_RS05890: PFLU_RS05890 - recombination regulator RecX, at 1,319,182 to 1,319,649 _RS05890 PFLU_RS31430: PFLU_RS31430 - hypothetical protein, at 1,319,703 to 1,319,963 _RS31430 PFLU_RS05895: PFLU_RS05895 - TIGR00730 family Rossman fold protein, at 1,319,893 to 1,321,005 _RS05895 Position (kb) 1318 1319 1320Strain fitness (log2 ratio) -2 -1 0 1 2at 1317.180 kb on + strand, within PFLU_RS05875at 1317.181 kb on - strand, within PFLU_RS05875at 1317.181 kb on - strand, within PFLU_RS05875at 1317.425 kb on + strandat 1317.425 kb on + strandat 1317.425 kb on + strandat 1317.425 kb on + strandat 1317.425 kb on + strandat 1317.425 kb on + strandat 1317.425 kb on + strandat 1317.425 kb on + strandat 1317.425 kb on + strandat 1317.425 kb on + strandat 1317.425 kb on + strandat 1317.425 kb on + strandat 1317.426 kb on - strandat 1317.426 kb on - strandat 1317.426 kb on - strandat 1317.426 kb on - strandat 1317.426 kb on - strandat 1317.492 kb on + strandat 1317.492 kb on + strandat 1317.492 kb on + strandat 1317.492 kb on + strandat 1317.492 kb on + strandat 1317.492 kb on + strandat 1317.493 kb on - strandat 1317.493 kb on - strandat 1317.680 kb on + strand, within PFLU_RS05880at 1317.689 kb on + strand, within PFLU_RS05880at 1317.690 kb on - strand, within PFLU_RS05880at 1317.822 kb on + strand, within PFLU_RS05880at 1317.882 kb on + strand, within PFLU_RS05880at 1317.882 kb on + strand, within PFLU_RS05880at 1317.882 kb on + strand, within PFLU_RS05880at 1317.883 kb on - strand, within PFLU_RS05880at 1317.883 kb on - strand, within PFLU_RS05880at 1317.883 kb on - strand, within PFLU_RS05880at 1317.883 kb on - strand, within PFLU_RS05880at 1317.883 kb on - strand, within PFLU_RS05880at 1317.883 kb on - strand, within PFLU_RS05880at 1317.982 kb on - strandat 1318.056 kb on + strandat 1318.057 kb on - strandat 1318.067 kb on + strandat 1318.068 kb on - strandat 1318.069 kb on + strandat 1318.094 kb on - strandat 1318.100 kb on + strandat 1318.100 kb on + strandat 1318.100 kb on + strandat 1318.101 kb on - strandat 1318.101 kb on - strandat 1318.101 kb on - strandat 1318.101 kb on - strandat 1318.101 kb on - strandat 1318.101 kb on - strandat 1318.114 kb on - strandat 1318.114 kb on - strandat 1318.195 kb on + strandat 1318.195 kb on + strandat 1318.304 kb on + strand, within PFLU_RS05885at 1318.304 kb on + strand, within PFLU_RS05885at 1318.304 kb on + strand, within PFLU_RS05885at 1318.305 kb on - strand, within PFLU_RS05885at 1318.305 kb on - strand, within PFLU_RS05885at 1318.325 kb on - strand, within PFLU_RS05885at 1318.418 kb on + strand, within PFLU_RS05885at 1318.418 kb on + strand, within PFLU_RS05885at 1318.418 kb on + strand, within PFLU_RS05885at 1318.640 kb on - strand, within PFLU_RS05885at 1318.699 kb on + strand, within PFLU_RS05885at 1318.699 kb on + strand, within PFLU_RS05885at 1318.764 kb on - strand, within PFLU_RS05885at 1318.764 kb on - strand, within PFLU_RS05885at 1318.764 kb on - strand, within PFLU_RS05885at 1318.764 kb on - strand, within PFLU_RS05885at 1318.764 kb on - strand, within PFLU_RS05885at 1318.912 kb on + strand, within PFLU_RS05885at 1318.913 kb on - strand, within PFLU_RS05885at 1318.913 kb on - strand, within PFLU_RS05885at 1318.916 kb on + strand, within PFLU_RS05885at 1318.916 kb on + strand, within PFLU_RS05885at 1318.916 kb on + strand, within PFLU_RS05885at 1318.916 kb on + strand, within PFLU_RS05885at 1318.916 kb on + strand, within PFLU_RS05885at 1318.917 kb on - strand, within PFLU_RS05885at 1318.917 kb on - strand, within PFLU_RS05885at 1318.988 kb on + strand, within PFLU_RS05885at 1318.988 kb on + strand, within PFLU_RS05885at 1318.988 kb on + strand, within PFLU_RS05885at 1318.988 kb on + strand, within PFLU_RS05885at 1318.988 kb on + strand, within PFLU_RS05885at 1318.989 kb on - strand, within PFLU_RS05885at 1318.989 kb on - strand, within PFLU_RS05885at 1319.192 kb on + strandat 1319.192 kb on + strandat 1319.193 kb on - strandat 1319.193 kb on - strandat 1319.200 kb on - strandat 1319.587 kb on + strand, within PFLU_RS05890at 1319.637 kb on + strandat 1319.651 kb on + strandat 1319.651 kb on + strandat 1319.652 kb on - strandat 1319.652 kb on - strandat 1319.661 kb on + strandat 1319.662 kb on - strandat 1319.686 kb on + strandat 1319.695 kb on + strandat 1319.740 kb on + strand, within PFLU_RS31430at 1319.740 kb on + strand, within PFLU_RS31430at 1319.740 kb on + strand, within PFLU_RS31430at 1319.740 kb on + strand, within PFLU_RS31430at 1319.741 kb on - strand, within PFLU_RS31430at 1319.741 kb on - strand, within PFLU_RS31430at 1319.741 kb on - strand, within PFLU_RS31430at 1319.741 kb on - strand, within PFLU_RS31430at 1319.856 kb on - strand, within PFLU_RS31430at 1319.864 kb on - strand, within PFLU_RS31430at 1319.864 kb on - strand, within PFLU_RS31430at 1319.966 kb on + strandat 1319.966 kb on + strandat 1319.966 kb on + strandat 1319.966 kb on + strandat 1319.967 kb on - strandat 1319.967 kb on - strandat 1319.967 kb on - strandat 1320.068 kb on + strand, within PFLU_RS05895at 1320.068 kb on + strand, within PFLU_RS05895at 1320.068 kb on + strand, within PFLU_RS05895at 1320.069 kb on - strand, within PFLU_RS05895

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C); with MOPS
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1,317,180 + PFLU_RS05875 0.46 +0.7
1,317,181 - PFLU_RS05875 0.47 -0.2
1,317,181 - PFLU_RS05875 0.47 -0.2
1,317,425 + +1.5
1,317,425 + -0.9
1,317,425 + -2.0
1,317,425 + -0.2
1,317,425 + -0.4
1,317,425 + +0.8
1,317,425 + -1.0
1,317,425 + +0.4
1,317,425 + -0.4
1,317,425 + +0.6
1,317,425 + +0.1
1,317,425 + +0.6
1,317,426 - -2.4
1,317,426 - -0.3
1,317,426 - +0.4
1,317,426 - +1.4
1,317,426 - +0.5
1,317,492 + +0.5
1,317,492 + +0.7
1,317,492 + +0.5
1,317,492 + +0.3
1,317,492 + -0.3
1,317,492 + -0.6
1,317,493 - +1.3
1,317,493 - +1.3
1,317,680 + PFLU_RS05880 0.30 -0.1
1,317,689 + PFLU_RS05880 0.32 +0.8
1,317,690 - PFLU_RS05880 0.32 -0.2
1,317,822 + PFLU_RS05880 0.58 +0.2
1,317,882 + PFLU_RS05880 0.70 +0.9
1,317,882 + PFLU_RS05880 0.70 +0.1
1,317,882 + PFLU_RS05880 0.70 -0.1
1,317,883 - PFLU_RS05880 0.70 -0.6
1,317,883 - PFLU_RS05880 0.70 -0.1
1,317,883 - PFLU_RS05880 0.70 +0.1
1,317,883 - PFLU_RS05880 0.70 -0.7
1,317,883 - PFLU_RS05880 0.70 +0.2
1,317,883 - PFLU_RS05880 0.70 -0.7
1,317,982 - -0.6
1,318,056 + +0.6
1,318,057 - +0.4
1,318,067 + +0.6
1,318,068 - -2.0
1,318,069 + +1.0
1,318,094 - -0.9
1,318,100 + -0.9
1,318,100 + -1.9
1,318,100 + +0.5
1,318,101 - -1.4
1,318,101 - -0.4
1,318,101 - -0.6
1,318,101 - +1.1
1,318,101 - -0.1
1,318,101 - +1.9
1,318,114 - +1.4
1,318,114 - -0.1
1,318,195 + -1.4
1,318,195 + +1.9
1,318,304 + PFLU_RS05885 0.18 -0.6
1,318,304 + PFLU_RS05885 0.18 -0.1
1,318,304 + PFLU_RS05885 0.18 -0.3
1,318,305 - PFLU_RS05885 0.18 -0.4
1,318,305 - PFLU_RS05885 0.18 -0.9
1,318,325 - PFLU_RS05885 0.20 -1.1
1,318,418 + PFLU_RS05885 0.29 +0.4
1,318,418 + PFLU_RS05885 0.29 +1.9
1,318,418 + PFLU_RS05885 0.29 -0.1
1,318,640 - PFLU_RS05885 0.50 -0.9
1,318,699 + PFLU_RS05885 0.55 -1.1
1,318,699 + PFLU_RS05885 0.55 -1.6
1,318,764 - PFLU_RS05885 0.61 +0.9
1,318,764 - PFLU_RS05885 0.61 +0.9
1,318,764 - PFLU_RS05885 0.61 -1.1
1,318,764 - PFLU_RS05885 0.61 -0.6
1,318,764 - PFLU_RS05885 0.61 +1.9
1,318,912 + PFLU_RS05885 0.75 -1.1
1,318,913 - PFLU_RS05885 0.75 +0.4
1,318,913 - PFLU_RS05885 0.75 -0.4
1,318,916 + PFLU_RS05885 0.76 +0.4
1,318,916 + PFLU_RS05885 0.76 -1.1
1,318,916 + PFLU_RS05885 0.76 -0.6
1,318,916 + PFLU_RS05885 0.76 +1.4
1,318,916 + PFLU_RS05885 0.76 +0.4
1,318,917 - PFLU_RS05885 0.76 +0.9
1,318,917 - PFLU_RS05885 0.76 -0.5
1,318,988 + PFLU_RS05885 0.82 -0.4
1,318,988 + PFLU_RS05885 0.82 -1.6
1,318,988 + PFLU_RS05885 0.82 +0.1
1,318,988 + PFLU_RS05885 0.82 -0.9
1,318,988 + PFLU_RS05885 0.82 +0.4
1,318,989 - PFLU_RS05885 0.83 -1.2
1,318,989 - PFLU_RS05885 0.83 +1.4
1,319,192 + -0.1
1,319,192 + +1.3
1,319,193 - -0.2
1,319,193 - -0.5
1,319,200 - +1.4
1,319,587 + PFLU_RS05890 0.87 -0.2
1,319,637 + -1.3
1,319,651 + -2.2
1,319,651 + -1.2
1,319,652 - +0.0
1,319,652 - +0.9
1,319,661 + -0.1
1,319,662 - -1.0
1,319,686 + +0.8
1,319,695 + +0.1
1,319,740 + PFLU_RS31430 0.14 +0.0
1,319,740 + PFLU_RS31430 0.14 +0.2
1,319,740 + PFLU_RS31430 0.14 -2.3
1,319,740 + PFLU_RS31430 0.14 +0.4
1,319,741 - PFLU_RS31430 0.15 -2.0
1,319,741 - PFLU_RS31430 0.15 -0.1
1,319,741 - PFLU_RS31430 0.15 +0.6
1,319,741 - PFLU_RS31430 0.15 +1.2
1,319,856 - PFLU_RS31430 0.59 +0.4
1,319,864 - PFLU_RS31430 0.62 -0.8
1,319,864 - PFLU_RS31430 0.62 -0.9
1,319,966 + +0.7
1,319,966 + +0.3
1,319,966 + -0.2
1,319,966 + -1.8
1,319,967 - -0.7
1,319,967 - +0.0
1,319,967 - +1.2
1,320,068 + PFLU_RS05895 0.16 -0.7
1,320,068 + PFLU_RS05895 0.16 +0.1
1,320,068 + PFLU_RS05895 0.16 +0.2
1,320,069 - PFLU_RS05895 0.16 -0.4

Or see this region's nucleotide sequence