Experiment: succinate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03485 and PFLU_RS03490 are separated by 223 nucleotides PFLU_RS03490 and PFLU_RS03495 are separated by 107 nucleotides
PFLU_RS03485: PFLU_RS03485 - OprD family porin, at 804,520 to 805,839
_RS03485
PFLU_RS03490: PFLU_RS03490 - DUF2790 domain-containing protein, at 806,063 to 806,395
_RS03490
PFLU_RS03495: PFLU_RS03495 - methyl-accepting chemotaxis protein, at 806,503 to 807,819
_RS03495
Position (kb) 806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 805.115 kb on + strand, within PFLU_RS03485 at 805.115 kb on + strand, within PFLU_RS03485 at 805.115 kb on + strand, within PFLU_RS03485 at 805.115 kb on + strand, within PFLU_RS03485 at 805.115 kb on + strand, within PFLU_RS03485 at 805.115 kb on + strand, within PFLU_RS03485 at 805.115 kb on + strand, within PFLU_RS03485 at 805.115 kb on + strand, within PFLU_RS03485 at 805.115 kb on + strand, within PFLU_RS03485 at 805.115 kb on + strand, within PFLU_RS03485 at 805.115 kb on + strand, within PFLU_RS03485 at 805.115 kb on + strand, within PFLU_RS03485 at 805.116 kb on - strand, within PFLU_RS03485 at 805.116 kb on - strand, within PFLU_RS03485 at 805.116 kb on - strand, within PFLU_RS03485 at 805.118 kb on + strand, within PFLU_RS03485 at 805.118 kb on + strand, within PFLU_RS03485 at 805.119 kb on - strand, within PFLU_RS03485 at 805.119 kb on - strand, within PFLU_RS03485 at 805.119 kb on - strand, within PFLU_RS03485 at 805.119 kb on - strand, within PFLU_RS03485 at 805.151 kb on + strand, within PFLU_RS03485 at 805.152 kb on - strand, within PFLU_RS03485 at 805.152 kb on - strand, within PFLU_RS03485 at 805.184 kb on + strand, within PFLU_RS03485 at 805.184 kb on + strand, within PFLU_RS03485 at 805.184 kb on + strand, within PFLU_RS03485 at 805.184 kb on + strand, within PFLU_RS03485 at 805.185 kb on - strand, within PFLU_RS03485 at 805.185 kb on - strand, within PFLU_RS03485 at 805.185 kb on - strand, within PFLU_RS03485 at 805.185 kb on - strand, within PFLU_RS03485 at 805.185 kb on - strand, within PFLU_RS03485 at 805.199 kb on + strand, within PFLU_RS03485 at 805.200 kb on - strand, within PFLU_RS03485 at 805.233 kb on - strand, within PFLU_RS03485 at 805.405 kb on + strand, within PFLU_RS03485 at 805.405 kb on + strand, within PFLU_RS03485 at 805.405 kb on + strand, within PFLU_RS03485 at 805.469 kb on + strand, within PFLU_RS03485 at 805.469 kb on + strand, within PFLU_RS03485 at 805.469 kb on + strand, within PFLU_RS03485 at 805.469 kb on + strand, within PFLU_RS03485 at 805.469 kb on + strand, within PFLU_RS03485 at 805.469 kb on + strand, within PFLU_RS03485 at 805.469 kb on + strand, within PFLU_RS03485 at 805.469 kb on + strand, within PFLU_RS03485 at 805.470 kb on - strand, within PFLU_RS03485 at 805.470 kb on - strand, within PFLU_RS03485 at 805.470 kb on - strand, within PFLU_RS03485 at 805.470 kb on - strand, within PFLU_RS03485 at 805.470 kb on - strand, within PFLU_RS03485 at 805.470 kb on - strand, within PFLU_RS03485 at 805.470 kb on - strand, within PFLU_RS03485 at 805.470 kb on - strand, within PFLU_RS03485 at 805.505 kb on - strand, within PFLU_RS03485 at 805.608 kb on + strand, within PFLU_RS03485 at 805.658 kb on + strand, within PFLU_RS03485 at 805.710 kb on - strand at 805.833 kb on + strand at 805.834 kb on - strand at 805.834 kb on - strand at 805.834 kb on - strand at 805.834 kb on - strand at 805.834 kb on - strand at 805.834 kb on - strand at 805.834 kb on - strand at 805.834 kb on - strand at 805.834 kb on - strand at 805.834 kb on - strand at 805.864 kb on + strand at 805.864 kb on + strand at 805.865 kb on - strand at 805.875 kb on + strand at 805.876 kb on - strand at 805.876 kb on - strand at 805.876 kb on - strand at 805.876 kb on - strand at 805.876 kb on - strand at 805.892 kb on - strand at 805.913 kb on - strand at 805.913 kb on - strand at 805.952 kb on + strand at 805.952 kb on + strand at 805.952 kb on + strand at 805.953 kb on - strand at 805.953 kb on - strand at 805.953 kb on - strand at 805.974 kb on + strand at 805.975 kb on - strand at 805.975 kb on - strand at 805.979 kb on - strand at 805.985 kb on + strand at 805.985 kb on + strand at 805.985 kb on + strand at 805.985 kb on + strand at 805.986 kb on - strand at 805.986 kb on - strand at 805.986 kb on - strand at 805.986 kb on - strand at 805.986 kb on - strand at 805.989 kb on + strand at 805.989 kb on + strand at 805.989 kb on + strand at 805.989 kb on + strand at 805.990 kb on - strand at 805.990 kb on - strand at 805.990 kb on - strand at 805.990 kb on - strand at 805.990 kb on - strand at 805.990 kb on - strand at 805.990 kb on - strand at 806.022 kb on + strand at 806.023 kb on - strand at 806.023 kb on - strand at 806.026 kb on + strand at 806.027 kb on - strand at 806.027 kb on - strand at 806.039 kb on + strand at 806.039 kb on + strand at 806.039 kb on + strand at 806.058 kb on + strand at 806.059 kb on - strand at 806.076 kb on - strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.143 kb on + strand, within PFLU_RS03490 at 806.143 kb on + strand, within PFLU_RS03490 at 806.144 kb on - strand, within PFLU_RS03490 at 806.190 kb on - strand, within PFLU_RS03490 at 806.190 kb on - strand, within PFLU_RS03490 at 806.190 kb on - strand, within PFLU_RS03490 at 806.223 kb on + strand, within PFLU_RS03490 at 806.223 kb on + strand, within PFLU_RS03490 at 806.223 kb on + strand, within PFLU_RS03490 at 806.224 kb on - strand, within PFLU_RS03490 at 806.231 kb on + strand, within PFLU_RS03490 at 806.321 kb on + strand, within PFLU_RS03490 at 806.321 kb on + strand, within PFLU_RS03490 at 806.321 kb on + strand, within PFLU_RS03490 at 806.321 kb on + strand, within PFLU_RS03490 at 806.322 kb on - strand, within PFLU_RS03490 at 806.322 kb on - strand, within PFLU_RS03490 at 806.322 kb on - strand, within PFLU_RS03490 at 806.322 kb on - strand, within PFLU_RS03490 at 806.347 kb on + strand, within PFLU_RS03490 at 806.348 kb on - strand, within PFLU_RS03490 at 806.357 kb on + strand, within PFLU_RS03490 at 806.408 kb on + strand at 806.409 kb on - strand at 806.409 kb on - strand at 806.409 kb on - strand at 806.411 kb on - strand at 806.411 kb on - strand at 806.437 kb on + strand at 806.437 kb on + strand at 806.438 kb on - strand at 806.438 kb on - strand at 806.438 kb on - strand at 806.508 kb on + strand at 806.508 kb on + strand at 806.508 kb on + strand at 806.508 kb on + strand at 806.508 kb on + strand at 806.508 kb on + strand at 806.734 kb on + strand, within PFLU_RS03495 at 806.734 kb on + strand, within PFLU_RS03495 at 806.735 kb on - strand, within PFLU_RS03495 at 806.884 kb on + strand, within PFLU_RS03495 at 806.884 kb on + strand, within PFLU_RS03495 at 806.885 kb on - strand, within PFLU_RS03495 at 806.885 kb on - strand, within PFLU_RS03495 at 806.885 kb on - strand, within PFLU_RS03495 at 806.958 kb on + strand, within PFLU_RS03495 at 806.959 kb on - strand, within PFLU_RS03495 at 807.032 kb on - strand, within PFLU_RS03495 at 807.088 kb on + strand, within PFLU_RS03495 at 807.088 kb on + strand, within PFLU_RS03495 at 807.089 kb on - strand, within PFLU_RS03495 at 807.089 kb on - strand, within PFLU_RS03495 at 807.089 kb on - strand, within PFLU_RS03495 at 807.103 kb on + strand, within PFLU_RS03495 at 807.104 kb on - strand, within PFLU_RS03495 at 807.202 kb on + strand, within PFLU_RS03495 at 807.202 kb on + strand, within PFLU_RS03495 at 807.202 kb on + strand, within PFLU_RS03495 at 807.202 kb on + strand, within PFLU_RS03495 at 807.202 kb on + strand, within PFLU_RS03495 at 807.202 kb on + strand, within PFLU_RS03495 at 807.203 kb on - strand, within PFLU_RS03495 at 807.203 kb on - strand, within PFLU_RS03495 at 807.203 kb on - strand, within PFLU_RS03495 at 807.203 kb on - strand, within PFLU_RS03495 at 807.203 kb on - strand, within PFLU_RS03495 at 807.203 kb on - strand, within PFLU_RS03495 at 807.235 kb on + strand, within PFLU_RS03495 at 807.316 kb on + strand, within PFLU_RS03495 at 807.342 kb on + strand, within PFLU_RS03495 at 807.342 kb on + strand, within PFLU_RS03495 at 807.357 kb on + strand, within PFLU_RS03495
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C); with MOPS remove 805,115 + PFLU_RS03485 0.45 +0.6 805,115 + PFLU_RS03485 0.45 -1.5 805,115 + PFLU_RS03485 0.45 -0.2 805,115 + PFLU_RS03485 0.45 +0.1 805,115 + PFLU_RS03485 0.45 -1.1 805,115 + PFLU_RS03485 0.45 -0.9 805,115 + PFLU_RS03485 0.45 +0.6 805,115 + PFLU_RS03485 0.45 +0.2 805,115 + PFLU_RS03485 0.45 +0.6 805,115 + PFLU_RS03485 0.45 +0.3 805,115 + PFLU_RS03485 0.45 -0.2 805,115 + PFLU_RS03485 0.45 +2.2 805,116 - PFLU_RS03485 0.45 -1.6 805,116 - PFLU_RS03485 0.45 +0.6 805,116 - PFLU_RS03485 0.45 +0.6 805,118 + PFLU_RS03485 0.45 -0.4 805,118 + PFLU_RS03485 0.45 -0.6 805,119 - PFLU_RS03485 0.45 -0.2 805,119 - PFLU_RS03485 0.45 -0.1 805,119 - PFLU_RS03485 0.45 -0.2 805,119 - PFLU_RS03485 0.45 -0.5 805,151 + PFLU_RS03485 0.48 -0.7 805,152 - PFLU_RS03485 0.48 +0.4 805,152 - PFLU_RS03485 0.48 -1.0 805,184 + PFLU_RS03485 0.50 -0.8 805,184 + PFLU_RS03485 0.50 +0.7 805,184 + PFLU_RS03485 0.50 -0.1 805,184 + PFLU_RS03485 0.50 +0.6 805,185 - PFLU_RS03485 0.50 +0.5 805,185 - PFLU_RS03485 0.50 +0.2 805,185 - PFLU_RS03485 0.50 -0.4 805,185 - PFLU_RS03485 0.50 +0.1 805,185 - PFLU_RS03485 0.50 -0.6 805,199 + PFLU_RS03485 0.51 +0.3 805,200 - PFLU_RS03485 0.52 +0.5 805,233 - PFLU_RS03485 0.54 +0.2 805,405 + PFLU_RS03485 0.67 +1.4 805,405 + PFLU_RS03485 0.67 -0.8 805,405 + PFLU_RS03485 0.67 -0.5 805,469 + PFLU_RS03485 0.72 -0.1 805,469 + PFLU_RS03485 0.72 +0.4 805,469 + PFLU_RS03485 0.72 -0.1 805,469 + PFLU_RS03485 0.72 -0.8 805,469 + PFLU_RS03485 0.72 +0.2 805,469 + PFLU_RS03485 0.72 +0.7 805,469 + PFLU_RS03485 0.72 -0.1 805,469 + PFLU_RS03485 0.72 -0.6 805,470 - PFLU_RS03485 0.72 +0.1 805,470 - PFLU_RS03485 0.72 +1.1 805,470 - PFLU_RS03485 0.72 -0.0 805,470 - PFLU_RS03485 0.72 +1.4 805,470 - PFLU_RS03485 0.72 -0.7 805,470 - PFLU_RS03485 0.72 -0.7 805,470 - PFLU_RS03485 0.72 +1.0 805,470 - PFLU_RS03485 0.72 +0.2 805,505 - PFLU_RS03485 0.75 +0.5 805,608 + PFLU_RS03485 0.82 +0.4 805,658 + PFLU_RS03485 0.86 +1.6 805,710 - +0.4 805,833 + -0.2 805,834 - +0.8 805,834 - -2.6 805,834 - -0.8 805,834 - -0.7 805,834 - +1.3 805,834 - -0.5 805,834 - +0.0 805,834 - -0.3 805,834 - -0.8 805,834 - +0.5 805,864 + +0.9 805,864 + -1.1 805,865 - -0.9 805,875 + +1.5 805,876 - -0.7 805,876 - -2.0 805,876 - +0.9 805,876 - +1.2 805,876 - -0.7 805,892 - -0.4 805,913 - -0.8 805,913 - +2.6 805,952 + -0.6 805,952 + -0.2 805,952 + +0.8 805,953 - -0.1 805,953 - -0.3 805,953 - -0.8 805,974 + -0.2 805,975 - +0.6 805,975 - -0.1 805,979 - -0.2 805,985 + -0.7 805,985 + -0.5 805,985 + -0.4 805,985 + +1.2 805,986 - -0.6 805,986 - +1.3 805,986 - -1.4 805,986 - -1.2 805,986 - -1.4 805,989 + +0.5 805,989 + -1.3 805,989 + +0.6 805,989 + +0.6 805,990 - +0.1 805,990 - -0.0 805,990 - +0.1 805,990 - -0.6 805,990 - -0.1 805,990 - +0.2 805,990 - +0.7 806,022 + -3.1 806,023 - -1.8 806,023 - +1.9 806,026 + -0.2 806,027 - +1.2 806,027 - +0.6 806,039 + +2.2 806,039 + +0.5 806,039 + -0.4 806,058 + +1.9 806,059 - +0.2 806,076 - -0.5 806,094 + +0.9 806,094 + -2.1 806,094 + +0.1 806,143 + PFLU_RS03490 0.24 -1.9 806,143 + PFLU_RS03490 0.24 -0.0 806,144 - PFLU_RS03490 0.24 +0.2 806,190 - PFLU_RS03490 0.38 +0.6 806,190 - PFLU_RS03490 0.38 -2.0 806,190 - PFLU_RS03490 0.38 -1.7 806,223 + PFLU_RS03490 0.48 -0.0 806,223 + PFLU_RS03490 0.48 +0.1 806,223 + PFLU_RS03490 0.48 -0.7 806,224 - PFLU_RS03490 0.48 -0.4 806,231 + PFLU_RS03490 0.50 -0.7 806,321 + PFLU_RS03490 0.77 +0.4 806,321 + PFLU_RS03490 0.77 -1.2 806,321 + PFLU_RS03490 0.77 +0.6 806,321 + PFLU_RS03490 0.77 +0.5 806,322 - PFLU_RS03490 0.78 -0.1 806,322 - PFLU_RS03490 0.78 +0.8 806,322 - PFLU_RS03490 0.78 +0.1 806,322 - PFLU_RS03490 0.78 -0.5 806,347 + PFLU_RS03490 0.85 -1.5 806,348 - PFLU_RS03490 0.86 +0.0 806,357 + PFLU_RS03490 0.88 -0.1 806,408 + -0.4 806,409 - -0.1 806,409 - -0.7 806,409 - +0.3 806,411 - -0.1 806,411 - +0.1 806,437 + -0.1 806,437 + -0.4 806,438 - +0.7 806,438 - -0.1 806,438 - -1.4 806,508 + -0.7 806,508 + -0.5 806,508 + -0.4 806,508 + -0.5 806,508 + -0.4 806,508 + -0.3 806,734 + PFLU_RS03495 0.18 +0.1 806,734 + PFLU_RS03495 0.18 -1.4 806,735 - PFLU_RS03495 0.18 -0.5 806,884 + PFLU_RS03495 0.29 -0.3 806,884 + PFLU_RS03495 0.29 +3.2 806,885 - PFLU_RS03495 0.29 -0.9 806,885 - PFLU_RS03495 0.29 -0.4 806,885 - PFLU_RS03495 0.29 -0.0 806,958 + PFLU_RS03495 0.35 -0.8 806,959 - PFLU_RS03495 0.35 +0.6 807,032 - PFLU_RS03495 0.40 -0.6 807,088 + PFLU_RS03495 0.44 +2.5 807,088 + PFLU_RS03495 0.44 +0.8 807,089 - PFLU_RS03495 0.44 -0.2 807,089 - PFLU_RS03495 0.44 +0.5 807,089 - PFLU_RS03495 0.44 +0.2 807,103 + PFLU_RS03495 0.46 -0.1 807,104 - PFLU_RS03495 0.46 +0.3 807,202 + PFLU_RS03495 0.53 +1.7 807,202 + PFLU_RS03495 0.53 -0.4 807,202 + PFLU_RS03495 0.53 -1.3 807,202 + PFLU_RS03495 0.53 +0.2 807,202 + PFLU_RS03495 0.53 -0.8 807,202 + PFLU_RS03495 0.53 -0.2 807,203 - PFLU_RS03495 0.53 +1.6 807,203 - PFLU_RS03495 0.53 +0.9 807,203 - PFLU_RS03495 0.53 +1.8 807,203 - PFLU_RS03495 0.53 +0.3 807,203 - PFLU_RS03495 0.53 -1.0 807,203 - PFLU_RS03495 0.53 -1.3 807,235 + PFLU_RS03495 0.56 -0.5 807,316 + PFLU_RS03495 0.62 +0.2 807,342 + PFLU_RS03495 0.64 +0.1 807,342 + PFLU_RS03495 0.64 -2.2 807,357 + PFLU_RS03495 0.65 +1.1
Or see this region's nucleotide sequence