Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS00610

Experiment: succinate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS00605 and PFLU_RS00610 are separated by 39 nucleotidesPFLU_RS00610 and PFLU_RS00615 are separated by 19 nucleotides PFLU_RS00605: PFLU_RS00605 - methyl-accepting chemotaxis protein, at 125,625 to 127,505 _RS00605 PFLU_RS00610: PFLU_RS00610 - SRPBCC family protein, at 127,545 to 128,003 _RS00610 PFLU_RS00615: PFLU_RS00615 - non-ribosomal peptide synthetase, at 128,023 to 131,394 _RS00615 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2at 126.622 kb on + strand, within PFLU_RS00605at 126.622 kb on + strand, within PFLU_RS00605at 126.623 kb on - strand, within PFLU_RS00605at 126.623 kb on - strand, within PFLU_RS00605at 126.623 kb on - strand, within PFLU_RS00605at 126.623 kb on - strand, within PFLU_RS00605at 126.654 kb on - strand, within PFLU_RS00605at 126.718 kb on + strand, within PFLU_RS00605at 126.774 kb on - strand, within PFLU_RS00605at 126.774 kb on - strand, within PFLU_RS00605at 126.830 kb on + strand, within PFLU_RS00605at 126.831 kb on - strand, within PFLU_RS00605at 127.136 kb on + strand, within PFLU_RS00605at 127.358 kb on - strandat 127.556 kb on + strandat 127.556 kb on + strandat 127.556 kb on + strandat 127.556 kb on + strandat 127.557 kb on - strandat 127.557 kb on - strandat 127.596 kb on + strand, within PFLU_RS00610at 127.596 kb on + strand, within PFLU_RS00610at 127.597 kb on - strand, within PFLU_RS00610at 127.597 kb on - strand, within PFLU_RS00610at 127.597 kb on - strand, within PFLU_RS00610at 127.714 kb on - strand, within PFLU_RS00610at 127.714 kb on - strand, within PFLU_RS00610at 127.727 kb on + strand, within PFLU_RS00610at 127.728 kb on - strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.729 kb on + strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.730 kb on - strand, within PFLU_RS00610at 127.982 kb on + strandat 127.983 kb on - strandat 127.983 kb on - strandat 127.983 kb on - strandat 128.048 kb on + strandat 128.048 kb on + strandat 128.048 kb on + strandat 128.049 kb on - strandat 128.180 kb on + strandat 128.219 kb on - strandat 128.297 kb on + strandat 128.297 kb on + strandat 128.297 kb on + strandat 128.298 kb on - strandat 128.325 kb on + strandat 128.461 kb on + strand, within PFLU_RS00615at 128.461 kb on + strand, within PFLU_RS00615at 128.461 kb on + strand, within PFLU_RS00615at 128.462 kb on - strand, within PFLU_RS00615at 128.462 kb on - strand, within PFLU_RS00615at 128.609 kb on + strand, within PFLU_RS00615at 128.624 kb on + strand, within PFLU_RS00615at 128.624 kb on + strand, within PFLU_RS00615at 128.624 kb on + strand, within PFLU_RS00615at 128.624 kb on + strand, within PFLU_RS00615at 128.624 kb on + strand, within PFLU_RS00615at 128.625 kb on - strand, within PFLU_RS00615at 128.625 kb on - strand, within PFLU_RS00615at 128.625 kb on - strand, within PFLU_RS00615at 128.780 kb on - strand, within PFLU_RS00615at 128.792 kb on + strand, within PFLU_RS00615at 128.793 kb on - strand, within PFLU_RS00615at 128.793 kb on - strand, within PFLU_RS00615at 128.793 kb on - strand, within PFLU_RS00615at 128.840 kb on + strand, within PFLU_RS00615at 128.850 kb on + strand, within PFLU_RS00615at 128.850 kb on + strand, within PFLU_RS00615at 128.850 kb on + strand, within PFLU_RS00615at 128.850 kb on + strand, within PFLU_RS00615at 128.850 kb on + strand, within PFLU_RS00615at 128.851 kb on - strand, within PFLU_RS00615at 128.851 kb on - strand, within PFLU_RS00615at 128.851 kb on - strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.861 kb on + strand, within PFLU_RS00615at 128.862 kb on - strand, within PFLU_RS00615at 128.862 kb on - strand, within PFLU_RS00615at 128.862 kb on - strand, within PFLU_RS00615at 128.862 kb on - strand, within PFLU_RS00615at 128.862 kb on - strand, within PFLU_RS00615at 128.862 kb on - strand, within PFLU_RS00615at 128.862 kb on - strand, within PFLU_RS00615at 128.862 kb on - strand, within PFLU_RS00615at 128.862 kb on - strand, within PFLU_RS00615at 128.865 kb on + strand, within PFLU_RS00615at 128.866 kb on - strand, within PFLU_RS00615at 128.866 kb on - strand, within PFLU_RS00615at 128.910 kb on - strand, within PFLU_RS00615at 128.910 kb on - strand, within PFLU_RS00615at 128.910 kb on - strand, within PFLU_RS00615

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C); with MOPS
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126,622 + PFLU_RS00605 0.53 -0.5
126,622 + PFLU_RS00605 0.53 +0.1
126,623 - PFLU_RS00605 0.53 -0.2
126,623 - PFLU_RS00605 0.53 +1.0
126,623 - PFLU_RS00605 0.53 +0.7
126,623 - PFLU_RS00605 0.53 +0.5
126,654 - PFLU_RS00605 0.55 -1.3
126,718 + PFLU_RS00605 0.58 -0.1
126,774 - PFLU_RS00605 0.61 -0.8
126,774 - PFLU_RS00605 0.61 -0.4
126,830 + PFLU_RS00605 0.64 +0.7
126,831 - PFLU_RS00605 0.64 -0.2
127,136 + PFLU_RS00605 0.80 -0.3
127,358 - +0.2
127,556 + -0.3
127,556 + +0.8
127,556 + +0.6
127,556 + -2.1
127,557 - +0.8
127,557 - +0.4
127,596 + PFLU_RS00610 0.11 +0.5
127,596 + PFLU_RS00610 0.11 +0.5
127,597 - PFLU_RS00610 0.11 +0.2
127,597 - PFLU_RS00610 0.11 -0.7
127,597 - PFLU_RS00610 0.11 +1.0
127,714 - PFLU_RS00610 0.37 -2.4
127,714 - PFLU_RS00610 0.37 +0.0
127,727 + PFLU_RS00610 0.40 -0.5
127,728 - PFLU_RS00610 0.40 +0.1
127,729 + PFLU_RS00610 0.40 +0.1
127,729 + PFLU_RS00610 0.40 +0.1
127,729 + PFLU_RS00610 0.40 +1.4
127,729 + PFLU_RS00610 0.40 +0.9
127,729 + PFLU_RS00610 0.40 +0.2
127,729 + PFLU_RS00610 0.40 -0.4
127,729 + PFLU_RS00610 0.40 +0.3
127,729 + PFLU_RS00610 0.40 +1.0
127,729 + PFLU_RS00610 0.40 -0.8
127,729 + PFLU_RS00610 0.40 -0.3
127,729 + PFLU_RS00610 0.40 +0.6
127,729 + PFLU_RS00610 0.40 -0.3
127,729 + PFLU_RS00610 0.40 +0.7
127,729 + PFLU_RS00610 0.40 -0.0
127,730 - PFLU_RS00610 0.40 -1.9
127,730 - PFLU_RS00610 0.40 +0.9
127,730 - PFLU_RS00610 0.40 -0.7
127,730 - PFLU_RS00610 0.40 -0.5
127,730 - PFLU_RS00610 0.40 -0.5
127,730 - PFLU_RS00610 0.40 +0.4
127,730 - PFLU_RS00610 0.40 -0.7
127,730 - PFLU_RS00610 0.40 +0.5
127,730 - PFLU_RS00610 0.40 +0.4
127,730 - PFLU_RS00610 0.40 -0.5
127,730 - PFLU_RS00610 0.40 -1.1
127,730 - PFLU_RS00610 0.40 +1.1
127,730 - PFLU_RS00610 0.40 +0.5
127,730 - PFLU_RS00610 0.40 -1.4
127,730 - PFLU_RS00610 0.40 -0.3
127,730 - PFLU_RS00610 0.40 -1.6
127,730 - PFLU_RS00610 0.40 +0.2
127,982 + -0.1
127,983 - -0.6
127,983 - +0.2
127,983 - +0.7
128,048 + -1.9
128,048 + -0.2
128,048 + +0.7
128,049 - +0.1
128,180 + +1.1
128,219 - +0.7
128,297 + +0.3
128,297 + +1.0
128,297 + +0.4
128,298 - +0.5
128,325 + -1.4
128,461 + PFLU_RS00615 0.13 +0.0
128,461 + PFLU_RS00615 0.13 -0.7
128,461 + PFLU_RS00615 0.13 +0.0
128,462 - PFLU_RS00615 0.13 -0.9
128,462 - PFLU_RS00615 0.13 +1.0
128,609 + PFLU_RS00615 0.17 -0.5
128,624 + PFLU_RS00615 0.18 -0.3
128,624 + PFLU_RS00615 0.18 +1.4
128,624 + PFLU_RS00615 0.18 -0.2
128,624 + PFLU_RS00615 0.18 -0.3
128,624 + PFLU_RS00615 0.18 +0.3
128,625 - PFLU_RS00615 0.18 +0.9
128,625 - PFLU_RS00615 0.18 -0.3
128,625 - PFLU_RS00615 0.18 -0.5
128,780 - PFLU_RS00615 0.22 +0.0
128,792 + PFLU_RS00615 0.23 -0.5
128,793 - PFLU_RS00615 0.23 +0.1
128,793 - PFLU_RS00615 0.23 +0.8
128,793 - PFLU_RS00615 0.23 +0.8
128,840 + PFLU_RS00615 0.24 -1.5
128,850 + PFLU_RS00615 0.25 +0.5
128,850 + PFLU_RS00615 0.25 +1.0
128,850 + PFLU_RS00615 0.25 -0.7
128,850 + PFLU_RS00615 0.25 -0.3
128,850 + PFLU_RS00615 0.25 -0.0
128,851 - PFLU_RS00615 0.25 +1.1
128,851 - PFLU_RS00615 0.25 +0.5
128,851 - PFLU_RS00615 0.25 +1.8
128,861 + PFLU_RS00615 0.25 +1.4
128,861 + PFLU_RS00615 0.25 +0.7
128,861 + PFLU_RS00615 0.25 -1.0
128,861 + PFLU_RS00615 0.25 -0.3
128,861 + PFLU_RS00615 0.25 +1.2
128,861 + PFLU_RS00615 0.25 +0.4
128,861 + PFLU_RS00615 0.25 +0.3
128,861 + PFLU_RS00615 0.25 -0.1
128,861 + PFLU_RS00615 0.25 -0.3
128,861 + PFLU_RS00615 0.25 -1.0
128,861 + PFLU_RS00615 0.25 -2.5
128,861 + PFLU_RS00615 0.25 -1.1
128,861 + PFLU_RS00615 0.25 +0.2
128,861 + PFLU_RS00615 0.25 +0.7
128,861 + PFLU_RS00615 0.25 -0.4
128,861 + PFLU_RS00615 0.25 -0.2
128,862 - PFLU_RS00615 0.25 -0.2
128,862 - PFLU_RS00615 0.25 +0.1
128,862 - PFLU_RS00615 0.25 -0.4
128,862 - PFLU_RS00615 0.25 -0.8
128,862 - PFLU_RS00615 0.25 +0.3
128,862 - PFLU_RS00615 0.25 -0.0
128,862 - PFLU_RS00615 0.25 -0.8
128,862 - PFLU_RS00615 0.25 -1.2
128,862 - PFLU_RS00615 0.25 -1.1
128,865 + PFLU_RS00615 0.25 +1.0
128,866 - PFLU_RS00615 0.25 +0.1
128,866 - PFLU_RS00615 0.25 -1.3
128,910 - PFLU_RS00615 0.26 +0.2
128,910 - PFLU_RS00615 0.26 -1.1
128,910 - PFLU_RS00615 0.26 -0.2

Or see this region's nucleotide sequence