Strain Fitness in Pseudomonas sp. S08-1 around OH686_23855

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23845 and OH686_23850 overlap by 4 nucleotidesOH686_23850 and OH686_23855 are separated by 11 nucleotidesOH686_23855 and OH686_23860 are separated by 15 nucleotidesOH686_23860 and OH686_23865 overlap by 4 nucleotides OH686_23845: OH686_23845 - Uncharacterized MFS-type transporter, at 4,830,886 to 4,832,112 _23845 OH686_23850: OH686_23850 - hypothetical protein, at 4,832,109 to 4,832,462 _23850 OH686_23855: OH686_23855 - Alpha-ketoglutarate-dependent taurine dioxygenase , at 4,832,474 to 4,833,307 _23855 OH686_23860: OH686_23860 - Taurine ABC transporter, permease protein TauC, at 4,833,323 to 4,834,156 _23860 OH686_23865: OH686_23865 - Taurine ABC transporter, ATP-binding protein TauB, at 4,834,153 to 4,834,935 _23865 Position (kb) 4832 4833 4834Strain fitness (log2 ratio) -2 -1 0 1 2at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.666 kb on - strand, within OH686_23845at 4831.666 kb on - strand, within OH686_23845at 4831.702 kb on + strand, within OH686_23845at 4831.702 kb on + strand, within OH686_23845at 4831.702 kb on + strand, within OH686_23845at 4831.702 kb on + strand, within OH686_23845at 4831.702 kb on + strand, within OH686_23845at 4831.703 kb on - strand, within OH686_23845at 4831.703 kb on - strand, within OH686_23845at 4831.703 kb on - strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.861 kb on + strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.862 kb on - strand, within OH686_23845at 4831.863 kb on + strand, within OH686_23845at 4831.863 kb on + strand, within OH686_23845at 4831.864 kb on - strand, within OH686_23845at 4831.864 kb on - strand, within OH686_23845at 4832.110 kb on + strandat 4832.110 kb on + strandat 4832.168 kb on - strand, within OH686_23850at 4832.224 kb on + strand, within OH686_23850at 4832.224 kb on + strand, within OH686_23850at 4832.225 kb on - strand, within OH686_23850at 4832.225 kb on - strand, within OH686_23850at 4832.225 kb on - strand, within OH686_23850at 4832.292 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.310 kb on + strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.311 kb on - strand, within OH686_23850at 4832.312 kb on + strand, within OH686_23850at 4832.312 kb on + strand, within OH686_23850at 4832.313 kb on - strand, within OH686_23850at 4832.313 kb on - strand, within OH686_23850at 4832.313 kb on - strand, within OH686_23850at 4832.326 kb on + strand, within OH686_23850at 4832.326 kb on + strand, within OH686_23850at 4832.327 kb on - strand, within OH686_23850at 4832.327 kb on - strand, within OH686_23850at 4832.327 kb on - strand, within OH686_23850at 4832.477 kb on + strandat 4832.477 kb on + strandat 4832.478 kb on - strandat 4832.478 kb on - strandat 4832.547 kb on + strandat 4832.547 kb on + strandat 4832.547 kb on + strandat 4832.547 kb on + strandat 4832.547 kb on + strandat 4832.548 kb on - strandat 4832.548 kb on - strandat 4832.548 kb on - strandat 4832.548 kb on - strandat 4832.581 kb on + strand, within OH686_23855at 4832.582 kb on - strand, within OH686_23855at 4832.582 kb on - strand, within OH686_23855at 4832.939 kb on - strand, within OH686_23855at 4832.949 kb on + strand, within OH686_23855at 4833.097 kb on - strand, within OH686_23855at 4833.097 kb on - strand, within OH686_23855at 4833.295 kb on + strandat 4833.295 kb on + strandat 4833.295 kb on + strandat 4833.295 kb on + strandat 4833.295 kb on + strandat 4833.296 kb on - strandat 4833.296 kb on - strandat 4833.296 kb on - strandat 4833.313 kb on + strandat 4833.313 kb on + strandat 4833.313 kb on + strandat 4833.313 kb on + strandat 4833.314 kb on - strandat 4833.314 kb on - strandat 4833.314 kb on - strandat 4833.682 kb on + strand, within OH686_23860at 4833.683 kb on - strand, within OH686_23860at 4833.683 kb on - strand, within OH686_23860at 4833.702 kb on + strand, within OH686_23860at 4833.702 kb on + strand, within OH686_23860at 4833.702 kb on + strand, within OH686_23860at 4833.703 kb on - strand, within OH686_23860at 4833.703 kb on - strand, within OH686_23860at 4833.703 kb on - strand, within OH686_23860at 4833.703 kb on - strand, within OH686_23860at 4833.703 kb on - strand, within OH686_23860at 4833.703 kb on - strand, within OH686_23860at 4833.762 kb on + strand, within OH686_23860at 4833.762 kb on + strand, within OH686_23860at 4833.763 kb on - strand, within OH686_23860at 4833.763 kb on - strand, within OH686_23860at 4834.134 kb on + strandat 4834.134 kb on + strandat 4834.134 kb on + strandat 4834.135 kb on - strandat 4834.135 kb on - strandat 4834.146 kb on + strandat 4834.146 kb on + strandat 4834.146 kb on + strandat 4834.147 kb on - strandat 4834.147 kb on - strandat 4834.147 kb on - strandat 4834.147 kb on - strandat 4834.263 kb on - strand, within OH686_23865at 4834.263 kb on - strand, within OH686_23865

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,831,615 + OH686_23845 0.59 +0.0
4,831,615 + OH686_23845 0.59 +1.5
4,831,615 + OH686_23845 0.59 -1.4
4,831,615 + OH686_23845 0.59 +0.0
4,831,615 + OH686_23845 0.59 +0.4
4,831,615 + OH686_23845 0.59 -0.6
4,831,615 + OH686_23845 0.59 +0.4
4,831,615 + OH686_23845 0.59 -0.1
4,831,615 + OH686_23845 0.59 +0.1
4,831,615 + OH686_23845 0.59 -0.0
4,831,616 - OH686_23845 0.59 +0.7
4,831,616 - OH686_23845 0.59 +0.0
4,831,616 - OH686_23845 0.59 -0.9
4,831,616 - OH686_23845 0.59 +0.2
4,831,616 - OH686_23845 0.59 +0.0
4,831,616 - OH686_23845 0.59 -0.2
4,831,616 - OH686_23845 0.59 -0.1
4,831,616 - OH686_23845 0.59 -1.2
4,831,616 - OH686_23845 0.59 -0.8
4,831,616 - OH686_23845 0.59 -0.9
4,831,616 - OH686_23845 0.59 +0.9
4,831,616 - OH686_23845 0.59 -0.6
4,831,616 - OH686_23845 0.59 +0.8
4,831,666 - OH686_23845 0.64 +0.4
4,831,666 - OH686_23845 0.64 +0.3
4,831,702 + OH686_23845 0.67 +1.1
4,831,702 + OH686_23845 0.67 -1.9
4,831,702 + OH686_23845 0.67 +0.3
4,831,702 + OH686_23845 0.67 +1.2
4,831,702 + OH686_23845 0.67 +1.7
4,831,703 - OH686_23845 0.67 -0.1
4,831,703 - OH686_23845 0.67 -0.1
4,831,703 - OH686_23845 0.67 +0.0
4,831,861 + OH686_23845 0.79 -0.6
4,831,861 + OH686_23845 0.79 +0.1
4,831,861 + OH686_23845 0.79 -0.5
4,831,861 + OH686_23845 0.79 -0.8
4,831,861 + OH686_23845 0.79 +0.0
4,831,861 + OH686_23845 0.79 +0.5
4,831,861 + OH686_23845 0.79 -1.0
4,831,861 + OH686_23845 0.79 +0.4
4,831,861 + OH686_23845 0.79 -0.0
4,831,861 + OH686_23845 0.79 -1.3
4,831,861 + OH686_23845 0.79 -1.3
4,831,861 + OH686_23845 0.79 -0.9
4,831,861 + OH686_23845 0.79 +0.1
4,831,861 + OH686_23845 0.79 +0.2
4,831,861 + OH686_23845 0.79 +0.5
4,831,861 + OH686_23845 0.79 -2.1
4,831,861 + OH686_23845 0.79 +0.5
4,831,861 + OH686_23845 0.79 +1.2
4,831,861 + OH686_23845 0.79 +0.7
4,831,861 + OH686_23845 0.79 +0.8
4,831,861 + OH686_23845 0.79 +1.1
4,831,861 + OH686_23845 0.79 -0.3
4,831,861 + OH686_23845 0.79 -2.0
4,831,861 + OH686_23845 0.79 +1.1
4,831,861 + OH686_23845 0.79 +0.3
4,831,861 + OH686_23845 0.79 -0.8
4,831,861 + OH686_23845 0.79 -0.4
4,831,861 + OH686_23845 0.79 +0.0
4,831,861 + OH686_23845 0.79 -0.1
4,831,861 + OH686_23845 0.79 -0.1
4,831,861 + OH686_23845 0.79 +0.1
4,831,861 + OH686_23845 0.79 -0.9
4,831,861 + OH686_23845 0.79 -0.9
4,831,862 - OH686_23845 0.80 +0.0
4,831,862 - OH686_23845 0.80 +1.0
4,831,862 - OH686_23845 0.80 -0.1
4,831,862 - OH686_23845 0.80 +0.1
4,831,862 - OH686_23845 0.80 +0.1
4,831,862 - OH686_23845 0.80 -1.5
4,831,862 - OH686_23845 0.80 +0.2
4,831,862 - OH686_23845 0.80 +1.4
4,831,862 - OH686_23845 0.80 +0.3
4,831,862 - OH686_23845 0.80 +0.4
4,831,862 - OH686_23845 0.80 -0.1
4,831,862 - OH686_23845 0.80 +0.8
4,831,862 - OH686_23845 0.80 -1.6
4,831,862 - OH686_23845 0.80 +0.0
4,831,862 - OH686_23845 0.80 -0.1
4,831,862 - OH686_23845 0.80 +0.5
4,831,862 - OH686_23845 0.80 +0.3
4,831,862 - OH686_23845 0.80 -0.8
4,831,862 - OH686_23845 0.80 +0.0
4,831,862 - OH686_23845 0.80 +0.3
4,831,862 - OH686_23845 0.80 +0.2
4,831,862 - OH686_23845 0.80 -0.8
4,831,862 - OH686_23845 0.80 +0.0
4,831,862 - OH686_23845 0.80 +0.4
4,831,862 - OH686_23845 0.80 +0.5
4,831,862 - OH686_23845 0.80 -0.2
4,831,862 - OH686_23845 0.80 +0.0
4,831,862 - OH686_23845 0.80 -1.2
4,831,862 - OH686_23845 0.80 -0.1
4,831,862 - OH686_23845 0.80 +1.3
4,831,862 - OH686_23845 0.80 +0.1
4,831,862 - OH686_23845 0.80 -0.7
4,831,862 - OH686_23845 0.80 -0.2
4,831,862 - OH686_23845 0.80 +0.5
4,831,862 - OH686_23845 0.80 -1.0
4,831,862 - OH686_23845 0.80 +0.7
4,831,862 - OH686_23845 0.80 +0.3
4,831,862 - OH686_23845 0.80 +0.7
4,831,862 - OH686_23845 0.80 +0.6
4,831,862 - OH686_23845 0.80 +0.4
4,831,862 - OH686_23845 0.80 +0.2
4,831,862 - OH686_23845 0.80 +0.1
4,831,863 + OH686_23845 0.80 -0.2
4,831,863 + OH686_23845 0.80 -1.2
4,831,864 - OH686_23845 0.80 +0.0
4,831,864 - OH686_23845 0.80 -0.4
4,832,110 + -0.7
4,832,110 + +0.3
4,832,168 - OH686_23850 0.17 -0.1
4,832,224 + OH686_23850 0.32 +0.1
4,832,224 + OH686_23850 0.32 +1.0
4,832,225 - OH686_23850 0.33 +0.6
4,832,225 - OH686_23850 0.33 +0.2
4,832,225 - OH686_23850 0.33 -0.1
4,832,292 + OH686_23850 0.52 -0.6
4,832,310 + OH686_23850 0.57 -0.2
4,832,310 + OH686_23850 0.57 -0.4
4,832,310 + OH686_23850 0.57 +0.0
4,832,310 + OH686_23850 0.57 +0.2
4,832,310 + OH686_23850 0.57 -0.6
4,832,310 + OH686_23850 0.57 +1.6
4,832,310 + OH686_23850 0.57 +0.5
4,832,310 + OH686_23850 0.57 -0.3
4,832,310 + OH686_23850 0.57 +0.9
4,832,310 + OH686_23850 0.57 -0.1
4,832,310 + OH686_23850 0.57 -0.8
4,832,310 + OH686_23850 0.57 -0.6
4,832,310 + OH686_23850 0.57 -0.3
4,832,310 + OH686_23850 0.57 -0.3
4,832,311 - OH686_23850 0.57 -0.5
4,832,311 - OH686_23850 0.57 -1.4
4,832,311 - OH686_23850 0.57 -0.4
4,832,311 - OH686_23850 0.57 -0.4
4,832,311 - OH686_23850 0.57 -1.0
4,832,311 - OH686_23850 0.57 -0.3
4,832,311 - OH686_23850 0.57 -0.5
4,832,311 - OH686_23850 0.57 -0.1
4,832,311 - OH686_23850 0.57 -0.5
4,832,311 - OH686_23850 0.57 +0.4
4,832,311 - OH686_23850 0.57 -0.2
4,832,311 - OH686_23850 0.57 -0.4
4,832,311 - OH686_23850 0.57 -0.3
4,832,311 - OH686_23850 0.57 -0.8
4,832,311 - OH686_23850 0.57 -0.1
4,832,311 - OH686_23850 0.57 +0.0
4,832,311 - OH686_23850 0.57 -1.0
4,832,311 - OH686_23850 0.57 -0.9
4,832,311 - OH686_23850 0.57 +0.2
4,832,312 + OH686_23850 0.57 +1.4
4,832,312 + OH686_23850 0.57 +0.2
4,832,313 - OH686_23850 0.58 -0.1
4,832,313 - OH686_23850 0.58 +0.0
4,832,313 - OH686_23850 0.58 -0.6
4,832,326 + OH686_23850 0.61 -1.9
4,832,326 + OH686_23850 0.61 +0.7
4,832,327 - OH686_23850 0.62 +0.2
4,832,327 - OH686_23850 0.62 -0.5
4,832,327 - OH686_23850 0.62 +0.3
4,832,477 + +0.2
4,832,477 + -0.4
4,832,478 - -1.7
4,832,478 - +0.6
4,832,547 + -0.7
4,832,547 + -0.3
4,832,547 + -0.2
4,832,547 + +0.4
4,832,547 + -0.3
4,832,548 - +0.6
4,832,548 - +1.0
4,832,548 - +0.2
4,832,548 - -0.4
4,832,581 + OH686_23855 0.13 +0.0
4,832,582 - OH686_23855 0.13 +0.5
4,832,582 - OH686_23855 0.13 -1.1
4,832,939 - OH686_23855 0.56 +0.8
4,832,949 + OH686_23855 0.57 -0.2
4,833,097 - OH686_23855 0.75 +0.4
4,833,097 - OH686_23855 0.75 +0.6
4,833,295 + -0.5
4,833,295 + +0.9
4,833,295 + -0.0
4,833,295 + -0.5
4,833,295 + -0.3
4,833,296 - +0.3
4,833,296 - +0.2
4,833,296 - +0.8
4,833,313 + -0.3
4,833,313 + +0.8
4,833,313 + +2.0
4,833,313 + +0.4
4,833,314 - -0.2
4,833,314 - -0.3
4,833,314 - +0.3
4,833,682 + OH686_23860 0.43 +0.8
4,833,683 - OH686_23860 0.43 -0.4
4,833,683 - OH686_23860 0.43 -0.6
4,833,702 + OH686_23860 0.45 +0.1
4,833,702 + OH686_23860 0.45 -0.3
4,833,702 + OH686_23860 0.45 -0.6
4,833,703 - OH686_23860 0.46 +0.1
4,833,703 - OH686_23860 0.46 -0.3
4,833,703 - OH686_23860 0.46 +0.0
4,833,703 - OH686_23860 0.46 -0.5
4,833,703 - OH686_23860 0.46 +0.3
4,833,703 - OH686_23860 0.46 +0.7
4,833,762 + OH686_23860 0.53 +0.9
4,833,762 + OH686_23860 0.53 +1.1
4,833,763 - OH686_23860 0.53 -0.2
4,833,763 - OH686_23860 0.53 +0.0
4,834,134 + +0.3
4,834,134 + +0.1
4,834,134 + -0.5
4,834,135 - +0.7
4,834,135 - -0.7
4,834,146 + +0.8
4,834,146 + +0.0
4,834,146 + +0.3
4,834,147 - +0.6
4,834,147 - +1.8
4,834,147 - -0.3
4,834,147 - +0.9
4,834,263 - OH686_23865 0.14 -0.4
4,834,263 - OH686_23865 0.14 -1.1

Or see this region's nucleotide sequence