Strain Fitness in Pseudomonas sp. S08-1 around OH686_23590

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23585 and OH686_23590 are separated by 269 nucleotidesOH686_23590 and OH686_23595 are separated by 19 nucleotides OH686_23585: OH686_23585 - Isochorismatase family protein, at 4,781,031 to 4,781,717 _23585 OH686_23590: OH686_23590 - RidA/YER057c/UK114 superfamily protein, at 4,781,987 to 4,782,448 _23590 OH686_23595: OH686_23595 - Transcriptional regulator, LysR family, at 4,782,468 to 4,783,454 _23595 Position (kb) 4781 4782 4783Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4781.032 kb on + strandat 4781.032 kb on + strandat 4781.032 kb on + strandat 4781.033 kb on - strandat 4781.033 kb on - strandat 4781.033 kb on - strandat 4781.033 kb on - strandat 4781.033 kb on - strandat 4781.104 kb on + strand, within OH686_23585at 4781.104 kb on + strand, within OH686_23585at 4781.104 kb on + strand, within OH686_23585at 4781.105 kb on - strand, within OH686_23585at 4781.105 kb on - strand, within OH686_23585at 4781.105 kb on - strand, within OH686_23585at 4781.105 kb on - strand, within OH686_23585at 4781.110 kb on + strand, within OH686_23585at 4781.110 kb on + strand, within OH686_23585at 4781.111 kb on - strand, within OH686_23585at 4781.129 kb on - strand, within OH686_23585at 4781.170 kb on + strand, within OH686_23585at 4781.170 kb on + strand, within OH686_23585at 4781.170 kb on + strand, within OH686_23585at 4781.170 kb on + strand, within OH686_23585at 4781.170 kb on + strand, within OH686_23585at 4781.170 kb on + strand, within OH686_23585at 4781.170 kb on + strand, within OH686_23585at 4781.170 kb on + strand, within OH686_23585at 4781.170 kb on + strand, within OH686_23585at 4781.171 kb on - strand, within OH686_23585at 4781.171 kb on - strand, within OH686_23585at 4781.171 kb on - strand, within OH686_23585at 4781.171 kb on - strand, within OH686_23585at 4781.171 kb on - strand, within OH686_23585at 4781.171 kb on - strand, within OH686_23585at 4781.171 kb on - strand, within OH686_23585at 4781.236 kb on - strand, within OH686_23585at 4781.236 kb on - strand, within OH686_23585at 4781.236 kb on - strand, within OH686_23585at 4781.266 kb on + strand, within OH686_23585at 4781.266 kb on + strand, within OH686_23585at 4781.266 kb on + strand, within OH686_23585at 4781.267 kb on - strand, within OH686_23585at 4781.286 kb on - strand, within OH686_23585at 4781.314 kb on + strand, within OH686_23585at 4781.314 kb on + strand, within OH686_23585at 4781.314 kb on + strand, within OH686_23585at 4781.314 kb on + strand, within OH686_23585at 4781.314 kb on + strand, within OH686_23585at 4781.314 kb on + strand, within OH686_23585at 4781.314 kb on + strand, within OH686_23585at 4781.315 kb on - strand, within OH686_23585at 4781.315 kb on - strand, within OH686_23585at 4781.315 kb on - strand, within OH686_23585at 4781.315 kb on - strand, within OH686_23585at 4781.315 kb on - strand, within OH686_23585at 4781.315 kb on - strand, within OH686_23585at 4781.315 kb on - strand, within OH686_23585at 4781.315 kb on - strand, within OH686_23585at 4781.315 kb on - strand, within OH686_23585at 4781.456 kb on + strand, within OH686_23585at 4781.509 kb on + strand, within OH686_23585at 4781.509 kb on + strand, within OH686_23585at 4781.509 kb on + strand, within OH686_23585at 4781.509 kb on + strand, within OH686_23585at 4781.513 kb on + strand, within OH686_23585at 4781.513 kb on + strand, within OH686_23585at 4781.513 kb on + strand, within OH686_23585at 4781.513 kb on + strand, within OH686_23585at 4781.513 kb on + strand, within OH686_23585at 4781.513 kb on + strand, within OH686_23585at 4781.514 kb on - strand, within OH686_23585at 4781.514 kb on - strand, within OH686_23585at 4781.514 kb on - strand, within OH686_23585at 4781.514 kb on - strand, within OH686_23585at 4781.514 kb on - strand, within OH686_23585at 4781.514 kb on - strand, within OH686_23585at 4781.724 kb on + strandat 4781.780 kb on + strandat 4781.781 kb on - strandat 4781.781 kb on - strandat 4781.781 kb on - strandat 4781.781 kb on - strandat 4781.793 kb on - strandat 4781.921 kb on + strandat 4781.921 kb on + strandat 4781.922 kb on - strandat 4781.922 kb on - strandat 4782.024 kb on - strandat 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.089 kb on + strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.090 kb on - strand, within OH686_23590at 4782.094 kb on - strand, within OH686_23590at 4782.094 kb on - strand, within OH686_23590at 4782.094 kb on - strand, within OH686_23590at 4782.152 kb on - strand, within OH686_23590at 4782.206 kb on + strand, within OH686_23590at 4782.207 kb on - strand, within OH686_23590at 4782.258 kb on + strand, within OH686_23590at 4782.259 kb on - strand, within OH686_23590at 4782.259 kb on - strand, within OH686_23590at 4782.275 kb on + strand, within OH686_23590at 4782.275 kb on + strand, within OH686_23590at 4782.275 kb on + strand, within OH686_23590at 4782.275 kb on + strand, within OH686_23590at 4782.275 kb on + strand, within OH686_23590at 4782.275 kb on + strand, within OH686_23590at 4782.275 kb on + strand, within OH686_23590at 4782.275 kb on + strand, within OH686_23590at 4782.275 kb on + strand, within OH686_23590at 4782.275 kb on + strand, within OH686_23590at 4782.275 kb on + strand, within OH686_23590at 4782.276 kb on - strand, within OH686_23590at 4782.276 kb on - strand, within OH686_23590at 4782.276 kb on - strand, within OH686_23590at 4782.276 kb on - strand, within OH686_23590at 4782.276 kb on - strand, within OH686_23590at 4782.276 kb on - strand, within OH686_23590at 4782.276 kb on - strand, within OH686_23590at 4782.276 kb on - strand, within OH686_23590at 4782.279 kb on + strand, within OH686_23590at 4782.279 kb on + strand, within OH686_23590at 4782.279 kb on + strand, within OH686_23590at 4782.280 kb on - strand, within OH686_23590at 4782.280 kb on - strand, within OH686_23590at 4782.280 kb on - strand, within OH686_23590at 4782.280 kb on - strand, within OH686_23590at 4782.332 kb on + strand, within OH686_23590at 4782.332 kb on + strand, within OH686_23590at 4782.333 kb on - strand, within OH686_23590at 4782.333 kb on - strand, within OH686_23590at 4782.364 kb on + strand, within OH686_23590at 4782.364 kb on + strand, within OH686_23590at 4782.364 kb on + strand, within OH686_23590at 4782.364 kb on + strand, within OH686_23590at 4782.365 kb on - strand, within OH686_23590at 4782.427 kb on + strandat 4782.447 kb on - strandat 4782.469 kb on + strandat 4782.469 kb on + strandat 4782.470 kb on - strandat 4782.769 kb on + strand, within OH686_23595at 4782.769 kb on + strand, within OH686_23595at 4782.770 kb on - strand, within OH686_23595at 4782.770 kb on - strand, within OH686_23595at 4782.770 kb on - strand, within OH686_23595at 4782.770 kb on - strand, within OH686_23595at 4782.805 kb on + strand, within OH686_23595at 4782.869 kb on - strand, within OH686_23595at 4783.051 kb on + strand, within OH686_23595at 4783.051 kb on + strand, within OH686_23595at 4783.051 kb on + strand, within OH686_23595at 4783.051 kb on + strand, within OH686_23595at 4783.051 kb on + strand, within OH686_23595at 4783.052 kb on - strand, within OH686_23595at 4783.052 kb on - strand, within OH686_23595at 4783.052 kb on - strand, within OH686_23595at 4783.052 kb on - strand, within OH686_23595at 4783.052 kb on - strand, within OH686_23595at 4783.052 kb on - strand, within OH686_23595at 4783.059 kb on + strand, within OH686_23595at 4783.059 kb on + strand, within OH686_23595at 4783.059 kb on + strand, within OH686_23595at 4783.059 kb on + strand, within OH686_23595at 4783.059 kb on + strand, within OH686_23595at 4783.116 kb on + strand, within OH686_23595at 4783.117 kb on - strand, within OH686_23595at 4783.117 kb on - strand, within OH686_23595at 4783.198 kb on + strand, within OH686_23595at 4783.198 kb on + strand, within OH686_23595at 4783.198 kb on + strand, within OH686_23595at 4783.199 kb on - strand, within OH686_23595at 4783.275 kb on + strand, within OH686_23595at 4783.276 kb on - strand, within OH686_23595at 4783.276 kb on - strand, within OH686_23595at 4783.276 kb on - strand, within OH686_23595at 4783.368 kb on + strandat 4783.369 kb on - strandat 4783.369 kb on - strandat 4783.369 kb on - strandat 4783.424 kb on + strandat 4783.424 kb on + strandat 4783.424 kb on + strandat 4783.424 kb on + strandat 4783.425 kb on - strandat 4783.425 kb on - strandat 4783.425 kb on - strandat 4783.425 kb on - strandat 4783.425 kb on - strandat 4783.430 kb on + strandat 4783.430 kb on + strandat 4783.430 kb on + strandat 4783.430 kb on + strandat 4783.430 kb on + strandat 4783.430 kb on + strandat 4783.430 kb on + strandat 4783.430 kb on + strandat 4783.431 kb on - strandat 4783.431 kb on - strandat 4783.431 kb on - strandat 4783.431 kb on - strandat 4783.431 kb on - strandat 4783.431 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,781,032 + +0.7
4,781,032 + +0.1
4,781,032 + -0.3
4,781,033 - -2.0
4,781,033 - -0.1
4,781,033 - +0.0
4,781,033 - -3.2
4,781,033 - -1.1
4,781,104 + OH686_23585 0.11 +0.0
4,781,104 + OH686_23585 0.11 -0.2
4,781,104 + OH686_23585 0.11 -0.3
4,781,105 - OH686_23585 0.11 -0.6
4,781,105 - OH686_23585 0.11 +0.2
4,781,105 - OH686_23585 0.11 +0.4
4,781,105 - OH686_23585 0.11 -2.2
4,781,110 + OH686_23585 0.11 -0.6
4,781,110 + OH686_23585 0.11 +0.5
4,781,111 - OH686_23585 0.12 +0.3
4,781,129 - OH686_23585 0.14 -0.3
4,781,170 + OH686_23585 0.20 +0.8
4,781,170 + OH686_23585 0.20 -0.8
4,781,170 + OH686_23585 0.20 -0.8
4,781,170 + OH686_23585 0.20 +1.0
4,781,170 + OH686_23585 0.20 +1.3
4,781,170 + OH686_23585 0.20 +1.3
4,781,170 + OH686_23585 0.20 -1.2
4,781,170 + OH686_23585 0.20 +0.7
4,781,170 + OH686_23585 0.20 +0.2
4,781,171 - OH686_23585 0.20 -0.7
4,781,171 - OH686_23585 0.20 +0.8
4,781,171 - OH686_23585 0.20 +0.5
4,781,171 - OH686_23585 0.20 +0.2
4,781,171 - OH686_23585 0.20 +0.0
4,781,171 - OH686_23585 0.20 -2.1
4,781,171 - OH686_23585 0.20 -1.9
4,781,236 - OH686_23585 0.30 -0.9
4,781,236 - OH686_23585 0.30 +1.3
4,781,236 - OH686_23585 0.30 +0.1
4,781,266 + OH686_23585 0.34 -0.8
4,781,266 + OH686_23585 0.34 -1.9
4,781,266 + OH686_23585 0.34 -0.8
4,781,267 - OH686_23585 0.34 -0.1
4,781,286 - OH686_23585 0.37 -0.9
4,781,314 + OH686_23585 0.41 -0.6
4,781,314 + OH686_23585 0.41 -0.6
4,781,314 + OH686_23585 0.41 -0.0
4,781,314 + OH686_23585 0.41 -1.7
4,781,314 + OH686_23585 0.41 +0.5
4,781,314 + OH686_23585 0.41 +0.4
4,781,314 + OH686_23585 0.41 +0.7
4,781,315 - OH686_23585 0.41 +0.7
4,781,315 - OH686_23585 0.41 +0.2
4,781,315 - OH686_23585 0.41 -1.6
4,781,315 - OH686_23585 0.41 -0.7
4,781,315 - OH686_23585 0.41 -0.1
4,781,315 - OH686_23585 0.41 -1.7
4,781,315 - OH686_23585 0.41 -0.4
4,781,315 - OH686_23585 0.41 +1.0
4,781,315 - OH686_23585 0.41 +0.2
4,781,456 + OH686_23585 0.62 -0.1
4,781,509 + OH686_23585 0.70 +0.3
4,781,509 + OH686_23585 0.70 +0.1
4,781,509 + OH686_23585 0.70 -0.8
4,781,509 + OH686_23585 0.70 +0.1
4,781,513 + OH686_23585 0.70 -0.3
4,781,513 + OH686_23585 0.70 +0.2
4,781,513 + OH686_23585 0.70 +0.6
4,781,513 + OH686_23585 0.70 -0.6
4,781,513 + OH686_23585 0.70 +0.4
4,781,513 + OH686_23585 0.70 -0.2
4,781,514 - OH686_23585 0.70 -1.2
4,781,514 - OH686_23585 0.70 +0.3
4,781,514 - OH686_23585 0.70 -1.1
4,781,514 - OH686_23585 0.70 +0.4
4,781,514 - OH686_23585 0.70 +0.0
4,781,514 - OH686_23585 0.70 +0.8
4,781,724 + +0.7
4,781,780 + +0.2
4,781,781 - -1.7
4,781,781 - +0.8
4,781,781 - -1.3
4,781,781 - +3.3
4,781,793 - -0.9
4,781,921 + +0.5
4,781,921 + +1.4
4,781,922 - +0.2
4,781,922 - -0.5
4,782,024 - -1.1
4,782,089 + OH686_23590 0.22 +0.8
4,782,089 + OH686_23590 0.22 +0.9
4,782,089 + OH686_23590 0.22 -0.3
4,782,089 + OH686_23590 0.22 +0.7
4,782,089 + OH686_23590 0.22 +1.3
4,782,089 + OH686_23590 0.22 -0.1
4,782,089 + OH686_23590 0.22 -1.8
4,782,089 + OH686_23590 0.22 +0.1
4,782,089 + OH686_23590 0.22 -0.7
4,782,089 + OH686_23590 0.22 -1.4
4,782,089 + OH686_23590 0.22 -0.4
4,782,089 + OH686_23590 0.22 +0.6
4,782,089 + OH686_23590 0.22 -2.4
4,782,089 + OH686_23590 0.22 +0.0
4,782,089 + OH686_23590 0.22 -0.1
4,782,090 - OH686_23590 0.22 -0.9
4,782,090 - OH686_23590 0.22 -0.5
4,782,090 - OH686_23590 0.22 +0.5
4,782,090 - OH686_23590 0.22 -0.4
4,782,090 - OH686_23590 0.22 -0.9
4,782,090 - OH686_23590 0.22 +0.8
4,782,090 - OH686_23590 0.22 +0.1
4,782,090 - OH686_23590 0.22 -0.6
4,782,090 - OH686_23590 0.22 +2.0
4,782,090 - OH686_23590 0.22 -1.2
4,782,090 - OH686_23590 0.22 +0.2
4,782,090 - OH686_23590 0.22 -0.1
4,782,090 - OH686_23590 0.22 -2.6
4,782,090 - OH686_23590 0.22 -3.9
4,782,090 - OH686_23590 0.22 -0.3
4,782,090 - OH686_23590 0.22 -0.5
4,782,094 - OH686_23590 0.23 +1.2
4,782,094 - OH686_23590 0.23 +0.4
4,782,094 - OH686_23590 0.23 +1.3
4,782,152 - OH686_23590 0.36 -0.0
4,782,206 + OH686_23590 0.47 +1.2
4,782,207 - OH686_23590 0.48 -0.8
4,782,258 + OH686_23590 0.59 +1.2
4,782,259 - OH686_23590 0.59 +0.6
4,782,259 - OH686_23590 0.59 +0.1
4,782,275 + OH686_23590 0.62 +0.5
4,782,275 + OH686_23590 0.62 -0.3
4,782,275 + OH686_23590 0.62 +0.1
4,782,275 + OH686_23590 0.62 +1.4
4,782,275 + OH686_23590 0.62 -1.1
4,782,275 + OH686_23590 0.62 -1.1
4,782,275 + OH686_23590 0.62 -3.3
4,782,275 + OH686_23590 0.62 +0.7
4,782,275 + OH686_23590 0.62 -1.0
4,782,275 + OH686_23590 0.62 +0.0
4,782,275 + OH686_23590 0.62 +0.4
4,782,276 - OH686_23590 0.63 -1.4
4,782,276 - OH686_23590 0.63 -1.5
4,782,276 - OH686_23590 0.63 -0.4
4,782,276 - OH686_23590 0.63 -0.0
4,782,276 - OH686_23590 0.63 -1.9
4,782,276 - OH686_23590 0.63 +0.7
4,782,276 - OH686_23590 0.63 +0.4
4,782,276 - OH686_23590 0.63 -0.7
4,782,279 + OH686_23590 0.63 -2.2
4,782,279 + OH686_23590 0.63 +0.3
4,782,279 + OH686_23590 0.63 +0.7
4,782,280 - OH686_23590 0.63 -0.2
4,782,280 - OH686_23590 0.63 +0.2
4,782,280 - OH686_23590 0.63 +0.4
4,782,280 - OH686_23590 0.63 +0.1
4,782,332 + OH686_23590 0.75 +0.4
4,782,332 + OH686_23590 0.75 -1.3
4,782,333 - OH686_23590 0.75 -0.1
4,782,333 - OH686_23590 0.75 +0.9
4,782,364 + OH686_23590 0.82 +0.3
4,782,364 + OH686_23590 0.82 -0.8
4,782,364 + OH686_23590 0.82 -0.3
4,782,364 + OH686_23590 0.82 +0.3
4,782,365 - OH686_23590 0.82 -0.2
4,782,427 + -0.8
4,782,447 - -0.3
4,782,469 + -0.2
4,782,469 + -0.2
4,782,470 - -1.0
4,782,769 + OH686_23595 0.30 +0.1
4,782,769 + OH686_23595 0.30 -2.0
4,782,770 - OH686_23595 0.31 +0.2
4,782,770 - OH686_23595 0.31 +0.5
4,782,770 - OH686_23595 0.31 +0.3
4,782,770 - OH686_23595 0.31 -0.2
4,782,805 + OH686_23595 0.34 +0.5
4,782,869 - OH686_23595 0.41 +0.1
4,783,051 + OH686_23595 0.59 -0.1
4,783,051 + OH686_23595 0.59 -0.5
4,783,051 + OH686_23595 0.59 -0.0
4,783,051 + OH686_23595 0.59 +0.3
4,783,051 + OH686_23595 0.59 -0.9
4,783,052 - OH686_23595 0.59 -0.7
4,783,052 - OH686_23595 0.59 +0.1
4,783,052 - OH686_23595 0.59 +0.0
4,783,052 - OH686_23595 0.59 -0.4
4,783,052 - OH686_23595 0.59 +0.1
4,783,052 - OH686_23595 0.59 -1.5
4,783,059 + OH686_23595 0.60 +0.0
4,783,059 + OH686_23595 0.60 -0.2
4,783,059 + OH686_23595 0.60 -1.5
4,783,059 + OH686_23595 0.60 +0.4
4,783,059 + OH686_23595 0.60 -0.6
4,783,116 + OH686_23595 0.66 -0.1
4,783,117 - OH686_23595 0.66 +0.2
4,783,117 - OH686_23595 0.66 +0.4
4,783,198 + OH686_23595 0.74 +0.9
4,783,198 + OH686_23595 0.74 -0.3
4,783,198 + OH686_23595 0.74 -0.8
4,783,199 - OH686_23595 0.74 -1.0
4,783,275 + OH686_23595 0.82 -0.3
4,783,276 - OH686_23595 0.82 -1.6
4,783,276 - OH686_23595 0.82 +0.3
4,783,276 - OH686_23595 0.82 +1.1
4,783,368 + -0.9
4,783,369 - +0.9
4,783,369 - -0.0
4,783,369 - +0.2
4,783,424 + +0.3
4,783,424 + -0.5
4,783,424 + -1.0
4,783,424 + +0.5
4,783,425 - +0.0
4,783,425 - +0.5
4,783,425 - +0.9
4,783,425 - -0.3
4,783,425 - -2.5
4,783,430 + -0.3
4,783,430 + -0.8
4,783,430 + -0.2
4,783,430 + +0.7
4,783,430 + +0.4
4,783,430 + -1.2
4,783,430 + +0.5
4,783,430 + -0.3
4,783,431 - -0.4
4,783,431 - -0.0
4,783,431 - -0.8
4,783,431 - -0.6
4,783,431 - +1.7
4,783,431 - +2.2

Or see this region's nucleotide sequence