Strain Fitness in Pseudomonas sp. S08-1 around OH686_08515

Experiment: Trisodium citrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_08510 and OH686_08515 are separated by 245 nucleotidesOH686_08515 and OH686_08520 are separated by 0 nucleotidesOH686_08520 and OH686_08525 are separated by 9 nucleotides OH686_08510: OH686_08510 - Phospholipid ABC transporter ATP-binding protein MlaF, at 1,730,879 to 1,731,688 _08510 OH686_08515: OH686_08515 - D-arabinose-5-phosphate isomerase , at 1,731,934 to 1,732,908 _08515 OH686_08520: OH686_08520 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase , at 1,732,909 to 1,733,433 _08520 OH686_08525: OH686_08525 - LPS export ABC transporter periplasmic protein LptC, at 1,733,443 to 1,734,012 _08525 Position (kb) 1731 1732 1733Strain fitness (log2 ratio) -2 -1 0 1 2at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.042 kb on + strand, within OH686_08510at 1731.043 kb on - strand, within OH686_08510at 1731.043 kb on - strand, within OH686_08510at 1731.043 kb on - strand, within OH686_08510at 1731.043 kb on - strand, within OH686_08510at 1731.043 kb on - strand, within OH686_08510at 1731.049 kb on - strand, within OH686_08510at 1731.049 kb on - strand, within OH686_08510at 1731.187 kb on - strand, within OH686_08510at 1731.614 kb on - strandat 1731.670 kb on - strandat 1731.670 kb on - strandat 1731.670 kb on - strandat 1731.783 kb on + strandat 1731.783 kb on + strandat 1731.783 kb on + strandat 1731.784 kb on - strandat 1731.784 kb on - strandat 1731.784 kb on - strandat 1731.784 kb on - strandat 1731.784 kb on - strandat 1731.785 kb on + strandat 1731.785 kb on + strandat 1731.785 kb on + strandat 1731.785 kb on + strandat 1731.785 kb on + strandat 1731.785 kb on + strandat 1731.786 kb on - strandat 1731.786 kb on - strandat 1731.786 kb on - strandat 1731.786 kb on - strandat 1731.786 kb on - strandat 1731.786 kb on - strandat 1731.894 kb on + strandat 1731.895 kb on - strandat 1731.896 kb on + strandat 1731.896 kb on + strandat 1731.896 kb on + strandat 1731.896 kb on + strandat 1731.896 kb on + strandat 1731.896 kb on + strandat 1731.896 kb on + strandat 1731.896 kb on + strandat 1731.896 kb on + strandat 1731.897 kb on - strandat 1731.897 kb on - strandat 1731.897 kb on - strandat 1731.897 kb on - strandat 1731.910 kb on + strandat 1731.910 kb on + strandat 1731.910 kb on + strandat 1731.911 kb on - strandat 1731.911 kb on - strandat 1732.901 kb on + strandat 1732.901 kb on + strandat 1732.906 kb on + strandat 1732.906 kb on + strandat 1733.431 kb on + strandat 1733.431 kb on + strandat 1733.431 kb on + strandat 1733.431 kb on + strandat 1733.431 kb on + strandat 1733.861 kb on + strand, within OH686_08525at 1733.861 kb on + strand, within OH686_08525at 1733.861 kb on + strand, within OH686_08525at 1733.861 kb on + strand, within OH686_08525at 1733.878 kb on + strand, within OH686_08525at 1733.878 kb on + strand, within OH686_08525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
remove
1,731,042 + OH686_08510 0.20 -0.0
1,731,042 + OH686_08510 0.20 -0.0
1,731,042 + OH686_08510 0.20 -0.0
1,731,042 + OH686_08510 0.20 -1.0
1,731,042 + OH686_08510 0.20 -0.0
1,731,042 + OH686_08510 0.20 -0.4
1,731,042 + OH686_08510 0.20 -0.0
1,731,042 + OH686_08510 0.20 -0.8
1,731,042 + OH686_08510 0.20 +2.0
1,731,042 + OH686_08510 0.20 -1.0
1,731,042 + OH686_08510 0.20 -0.4
1,731,042 + OH686_08510 0.20 -1.0
1,731,042 + OH686_08510 0.20 -0.0
1,731,043 - OH686_08510 0.20 -0.4
1,731,043 - OH686_08510 0.20 -0.8
1,731,043 - OH686_08510 0.20 -0.0
1,731,043 - OH686_08510 0.20 -0.0
1,731,043 - OH686_08510 0.20 -0.0
1,731,049 - OH686_08510 0.21 -0.0
1,731,049 - OH686_08510 0.21 -0.6
1,731,187 - OH686_08510 0.38 +2.0
1,731,614 - -0.6
1,731,670 - -0.0
1,731,670 - +1.6
1,731,670 - -0.4
1,731,783 + -0.2
1,731,783 + -0.8
1,731,783 + +0.6
1,731,784 - +0.3
1,731,784 - -1.0
1,731,784 - -0.2
1,731,784 - -0.9
1,731,784 - +0.2
1,731,785 + -0.1
1,731,785 + +0.5
1,731,785 + +0.1
1,731,785 + +0.3
1,731,785 + -0.0
1,731,785 + +1.7
1,731,786 - +0.2
1,731,786 - +0.3
1,731,786 - -1.2
1,731,786 - -0.7
1,731,786 - +0.9
1,731,786 - -0.6
1,731,894 + -0.4
1,731,895 - +0.4
1,731,896 + +0.0
1,731,896 + +0.1
1,731,896 + -0.3
1,731,896 + -0.1
1,731,896 + +0.5
1,731,896 + -0.5
1,731,896 + +0.4
1,731,896 + +0.2
1,731,896 + +0.1
1,731,897 - -0.4
1,731,897 - -0.8
1,731,897 - +0.2
1,731,897 - -0.7
1,731,910 + +0.3
1,731,910 + +0.1
1,731,910 + -0.9
1,731,911 - -0.7
1,731,911 - -1.0
1,732,901 + +0.1
1,732,901 + +1.4
1,732,906 + -0.8
1,732,906 + -1.1
1,733,431 + +1.0
1,733,431 + -1.3
1,733,431 + -0.4
1,733,431 + -0.3
1,733,431 + -0.2
1,733,861 + OH686_08525 0.73 -0.9
1,733,861 + OH686_08525 0.73 -2.2
1,733,861 + OH686_08525 0.73 -1.4
1,733,861 + OH686_08525 0.73 -2.4
1,733,878 + OH686_08525 0.76 -0.7
1,733,878 + OH686_08525 0.76 -1.6

Or see this region's nucleotide sequence