Strain Fitness in Pseudomonas sp. S08-1 around OH686_08450

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08445 and OH686_08450 are separated by 12 nucleotidesOH686_08450 and OH686_08455 are separated by 123 nucleotidesOH686_08455 and OH686_08460 are separated by 114 nucleotides OH686_08445: OH686_08445 - Sulfate adenylyltransferase subunit 1 / Adenylylsulfate kinase , at 1,718,745 to 1,720,643 _08445 OH686_08450: OH686_08450 - Sulfate adenylyltransferase subunit 2 , at 1,720,656 to 1,721,573 _08450 OH686_08455: OH686_08455 - GTP cyclohydrolase 1 type 2-related YbgI, at 1,721,697 to 1,722,455 _08455 OH686_08460: OH686_08460 - Outer membrane stress sensor protease DegS, at 1,722,570 to 1,723,730 _08460 Position (kb) 1720 1721 1722Strain fitness (log2 ratio) -3 -2 -1 0 1at 1720.294 kb on + strand, within OH686_08445at 1720.294 kb on + strand, within OH686_08445at 1720.657 kb on + strandat 1720.657 kb on + strandat 1720.658 kb on - strandat 1720.658 kb on - strandat 1720.658 kb on - strandat 1720.658 kb on - strandat 1720.658 kb on - strandat 1720.658 kb on - strandat 1721.263 kb on + strand, within OH686_08450at 1721.528 kb on + strandat 1721.579 kb on - strandat 1721.579 kb on - strandat 1721.630 kb on + strandat 1721.630 kb on + strandat 1721.630 kb on + strandat 1721.630 kb on + strandat 1721.630 kb on + strandat 1721.630 kb on + strandat 1721.630 kb on + strandat 1721.630 kb on + strandat 1721.630 kb on + strandat 1721.630 kb on + strandat 1721.631 kb on - strandat 1721.631 kb on - strandat 1721.631 kb on - strandat 1721.631 kb on - strandat 1721.631 kb on - strandat 1721.631 kb on - strandat 1721.631 kb on - strandat 1721.631 kb on - strandat 1721.631 kb on - strandat 1721.755 kb on + strandat 1721.756 kb on - strandat 1721.872 kb on + strand, within OH686_08455at 1721.872 kb on + strand, within OH686_08455at 1721.872 kb on + strand, within OH686_08455at 1721.872 kb on + strand, within OH686_08455at 1721.872 kb on + strand, within OH686_08455at 1721.873 kb on - strand, within OH686_08455at 1721.873 kb on - strand, within OH686_08455at 1721.873 kb on - strand, within OH686_08455at 1721.908 kb on + strand, within OH686_08455at 1721.908 kb on + strand, within OH686_08455at 1721.908 kb on + strand, within OH686_08455at 1721.908 kb on + strand, within OH686_08455at 1721.908 kb on + strand, within OH686_08455at 1721.909 kb on - strand, within OH686_08455at 1721.909 kb on - strand, within OH686_08455at 1721.909 kb on - strand, within OH686_08455at 1721.909 kb on - strand, within OH686_08455at 1721.909 kb on - strand, within OH686_08455at 1722.129 kb on - strand, within OH686_08455at 1722.163 kb on + strand, within OH686_08455at 1722.253 kb on + strand, within OH686_08455at 1722.254 kb on - strand, within OH686_08455at 1722.254 kb on - strand, within OH686_08455at 1722.385 kb on + strandat 1722.385 kb on + strandat 1722.385 kb on + strandat 1722.385 kb on + strandat 1722.386 kb on - strandat 1722.440 kb on + strandat 1722.441 kb on - strandat 1722.510 kb on + strandat 1722.510 kb on + strandat 1722.510 kb on + strandat 1722.510 kb on + strandat 1722.510 kb on + strandat 1722.510 kb on + strandat 1722.510 kb on + strandat 1722.511 kb on - strandat 1722.511 kb on - strandat 1722.511 kb on - strandat 1722.511 kb on - strandat 1722.511 kb on - strandat 1722.511 kb on - strandat 1722.511 kb on - strandat 1722.511 kb on - strandat 1722.511 kb on - strandat 1722.512 kb on + strandat 1722.512 kb on + strandat 1722.512 kb on + strandat 1722.512 kb on + strandat 1722.513 kb on - strandat 1722.513 kb on - strandat 1722.513 kb on - strandat 1722.513 kb on - strandat 1722.526 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.567 kb on + strandat 1722.568 kb on - strandat 1722.568 kb on - strandat 1722.568 kb on - strandat 1722.568 kb on - strandat 1722.568 kb on - strandat 1722.568 kb on - strandat 1722.568 kb on - strandat 1722.568 kb on - strandat 1722.568 kb on - strandat 1722.568 kb on - strandat 1722.568 kb on - strandat 1722.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,720,294 + OH686_08445 0.82 -0.0
1,720,294 + OH686_08445 0.82 -0.4
1,720,657 + -1.8
1,720,657 + -0.8
1,720,658 - +0.4
1,720,658 - +0.0
1,720,658 - -0.7
1,720,658 - -0.2
1,720,658 - -0.2
1,720,658 - -0.6
1,721,263 + OH686_08450 0.66 -0.6
1,721,528 + -0.0
1,721,579 - +1.0
1,721,579 - +0.1
1,721,630 + -1.4
1,721,630 + -2.4
1,721,630 + -3.1
1,721,630 + -1.8
1,721,630 + -1.7
1,721,630 + -1.5
1,721,630 + -1.6
1,721,630 + -2.1
1,721,630 + -2.6
1,721,630 + -2.1
1,721,631 - -0.8
1,721,631 - +0.8
1,721,631 - +0.7
1,721,631 - +0.8
1,721,631 - -0.1
1,721,631 - -0.1
1,721,631 - -0.8
1,721,631 - -0.1
1,721,631 - -0.5
1,721,755 + +0.0
1,721,756 - -1.3
1,721,872 + OH686_08455 0.23 -0.7
1,721,872 + OH686_08455 0.23 +0.4
1,721,872 + OH686_08455 0.23 +0.0
1,721,872 + OH686_08455 0.23 +0.8
1,721,872 + OH686_08455 0.23 +0.5
1,721,873 - OH686_08455 0.23 +0.1
1,721,873 - OH686_08455 0.23 -0.9
1,721,873 - OH686_08455 0.23 +0.7
1,721,908 + OH686_08455 0.28 -1.4
1,721,908 + OH686_08455 0.28 +1.6
1,721,908 + OH686_08455 0.28 -0.7
1,721,908 + OH686_08455 0.28 +0.5
1,721,908 + OH686_08455 0.28 +0.6
1,721,909 - OH686_08455 0.28 +0.1
1,721,909 - OH686_08455 0.28 -0.4
1,721,909 - OH686_08455 0.28 -0.8
1,721,909 - OH686_08455 0.28 +0.6
1,721,909 - OH686_08455 0.28 -0.4
1,722,129 - OH686_08455 0.57 -1.5
1,722,163 + OH686_08455 0.61 -0.0
1,722,253 + OH686_08455 0.73 +0.0
1,722,254 - OH686_08455 0.73 -1.6
1,722,254 - OH686_08455 0.73 -0.9
1,722,385 + +0.2
1,722,385 + -0.1
1,722,385 + -0.6
1,722,385 + -1.8
1,722,386 - +0.5
1,722,440 + -1.1
1,722,441 - +1.0
1,722,510 + +0.3
1,722,510 + +1.6
1,722,510 + -0.0
1,722,510 + +0.4
1,722,510 + +0.9
1,722,510 + -1.1
1,722,510 + -0.4
1,722,511 - -0.8
1,722,511 - -0.2
1,722,511 - +0.8
1,722,511 - +0.6
1,722,511 - +0.2
1,722,511 - -0.1
1,722,511 - -0.2
1,722,511 - -0.1
1,722,511 - +0.2
1,722,512 + +0.1
1,722,512 + -0.6
1,722,512 + +1.1
1,722,512 + -0.1
1,722,513 - -0.0
1,722,513 - +0.1
1,722,513 - -0.9
1,722,513 - -0.4
1,722,526 + -0.9
1,722,567 + -0.4
1,722,567 + -0.0
1,722,567 + -0.3
1,722,567 + +0.4
1,722,567 + +0.7
1,722,567 + -0.3
1,722,567 + +0.8
1,722,567 + -2.0
1,722,567 + -0.5
1,722,567 + -0.2
1,722,567 + +0.5
1,722,567 + -0.0
1,722,567 + -0.1
1,722,567 + +0.0
1,722,567 + -0.0
1,722,568 - -0.8
1,722,568 - -2.4
1,722,568 - -0.1
1,722,568 - -2.1
1,722,568 - -0.9
1,722,568 - -1.1
1,722,568 - +0.2
1,722,568 - +1.6
1,722,568 - +0.6
1,722,568 - +0.7
1,722,568 - +0.2
1,722,568 - -0.0

Or see this region's nucleotide sequence