Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_02720 and OH686_02725 are separated by 19 nucleotides OH686_02725 and OH686_02730 are separated by 71 nucleotides OH686_02730 and OH686_02735 are separated by 20 nucleotides OH686_02735 and OH686_02740 are separated by 96 nucleotides
OH686_02720: OH686_02720 - Chemotaxis response - phosphatase CheZ, at 574,014 to 574,802
_02720
OH686_02725: OH686_02725 - Chemotaxis regulator - transmits chemoreceptor signals to flagellar motor components CheY, at 574,822 to 575,208
_02725
OH686_02730: OH686_02730 - RNA polymerase sigma factor for flagellar operon, at 575,280 to 576,002
_02730
OH686_02735: OH686_02735 - Flagellar synthesis regulator FleN, at 576,023 to 576,856
_02735
OH686_02740: OH686_02740 - flagellar biosynthesis protein FlhF, at 576,953 to 578,278
_02740
Position (kb) 575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 574.351 kb on + strand, within OH686_02720 at 574.351 kb on + strand, within OH686_02720 at 574.351 kb on + strand, within OH686_02720 at 574.351 kb on + strand, within OH686_02720 at 574.531 kb on + strand, within OH686_02720 at 574.531 kb on + strand, within OH686_02720 at 574.531 kb on + strand, within OH686_02720 at 574.531 kb on + strand, within OH686_02720 at 574.531 kb on + strand, within OH686_02720 at 574.531 kb on + strand, within OH686_02720 at 574.532 kb on - strand, within OH686_02720 at 574.532 kb on - strand, within OH686_02720 at 574.532 kb on - strand, within OH686_02720 at 574.532 kb on - strand, within OH686_02720 at 574.532 kb on - strand, within OH686_02720 at 574.611 kb on + strand, within OH686_02720 at 574.612 kb on - strand, within OH686_02720 at 574.654 kb on + strand, within OH686_02720 at 574.654 kb on + strand, within OH686_02720 at 574.655 kb on - strand, within OH686_02720 at 574.699 kb on - strand, within OH686_02720 at 574.745 kb on + strand at 574.746 kb on - strand at 574.746 kb on - strand at 574.802 kb on + strand at 574.864 kb on - strand, within OH686_02725 at 574.895 kb on + strand, within OH686_02725 at 574.895 kb on + strand, within OH686_02725 at 574.895 kb on + strand, within OH686_02725 at 574.895 kb on + strand, within OH686_02725 at 574.895 kb on + strand, within OH686_02725 at 574.895 kb on + strand, within OH686_02725 at 574.896 kb on - strand, within OH686_02725 at 574.896 kb on - strand, within OH686_02725 at 574.896 kb on - strand, within OH686_02725 at 574.896 kb on - strand, within OH686_02725 at 575.220 kb on + strand at 575.220 kb on + strand at 575.220 kb on + strand at 575.220 kb on + strand at 575.221 kb on - strand at 575.228 kb on + strand at 575.228 kb on + strand at 575.228 kb on + strand at 575.228 kb on + strand at 575.407 kb on + strand, within OH686_02730 at 575.408 kb on - strand, within OH686_02730 at 575.408 kb on - strand, within OH686_02730 at 575.410 kb on + strand, within OH686_02730 at 575.411 kb on - strand, within OH686_02730 at 575.411 kb on - strand, within OH686_02730 at 575.411 kb on - strand, within OH686_02730 at 575.411 kb on - strand, within OH686_02730 at 575.411 kb on - strand, within OH686_02730 at 575.411 kb on - strand, within OH686_02730 at 575.411 kb on - strand, within OH686_02730 at 575.614 kb on + strand, within OH686_02730 at 575.614 kb on + strand, within OH686_02730 at 575.618 kb on - strand, within OH686_02730 at 575.618 kb on - strand, within OH686_02730 at 575.664 kb on - strand, within OH686_02730 at 575.720 kb on + strand, within OH686_02730 at 575.731 kb on - strand, within OH686_02730 at 575.731 kb on - strand, within OH686_02730 at 575.800 kb on + strand, within OH686_02730 at 575.800 kb on + strand, within OH686_02730 at 575.801 kb on - strand, within OH686_02730 at 575.834 kb on - strand, within OH686_02730 at 575.853 kb on + strand, within OH686_02730 at 575.853 kb on + strand, within OH686_02730 at 575.853 kb on + strand, within OH686_02730 at 575.854 kb on - strand, within OH686_02730 at 575.924 kb on - strand, within OH686_02730 at 575.950 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.998 kb on + strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 575.999 kb on - strand at 576.006 kb on + strand at 576.006 kb on + strand at 576.006 kb on + strand at 576.006 kb on + strand at 576.006 kb on + strand at 576.027 kb on - strand at 576.027 kb on - strand at 576.034 kb on + strand at 576.174 kb on + strand, within OH686_02735 at 576.174 kb on + strand, within OH686_02735 at 576.174 kb on + strand, within OH686_02735 at 576.174 kb on + strand, within OH686_02735 at 576.174 kb on + strand, within OH686_02735 at 576.174 kb on + strand, within OH686_02735 at 576.207 kb on - strand, within OH686_02735 at 576.219 kb on + strand, within OH686_02735 at 576.219 kb on + strand, within OH686_02735 at 576.237 kb on + strand, within OH686_02735 at 576.237 kb on + strand, within OH686_02735 at 576.237 kb on + strand, within OH686_02735 at 576.238 kb on - strand, within OH686_02735 at 576.238 kb on - strand, within OH686_02735 at 576.238 kb on - strand, within OH686_02735 at 576.238 kb on - strand, within OH686_02735 at 576.238 kb on - strand, within OH686_02735 at 576.238 kb on - strand, within OH686_02735 at 576.238 kb on - strand, within OH686_02735 at 576.238 kb on - strand, within OH686_02735 at 576.283 kb on + strand, within OH686_02735 at 576.283 kb on + strand, within OH686_02735 at 576.283 kb on + strand, within OH686_02735 at 576.283 kb on + strand, within OH686_02735 at 576.283 kb on + strand, within OH686_02735 at 576.284 kb on - strand, within OH686_02735 at 576.284 kb on - strand, within OH686_02735 at 576.313 kb on + strand, within OH686_02735 at 576.313 kb on + strand, within OH686_02735 at 576.314 kb on - strand, within OH686_02735 at 576.354 kb on + strand, within OH686_02735 at 576.354 kb on + strand, within OH686_02735 at 576.354 kb on + strand, within OH686_02735 at 576.385 kb on - strand, within OH686_02735 at 576.494 kb on + strand, within OH686_02735 at 576.494 kb on + strand, within OH686_02735 at 576.494 kb on + strand, within OH686_02735 at 576.494 kb on + strand, within OH686_02735 at 576.494 kb on + strand, within OH686_02735 at 576.495 kb on - strand, within OH686_02735 at 576.495 kb on - strand, within OH686_02735 at 576.837 kb on - strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.847 kb on + strand at 576.848 kb on - strand at 576.848 kb on - strand at 576.848 kb on - strand at 576.848 kb on - strand at 576.848 kb on - strand at 576.848 kb on - strand at 576.848 kb on - strand at 576.848 kb on - strand at 576.848 kb on - strand at 576.848 kb on - strand at 576.848 kb on - strand at 576.850 kb on + strand at 576.850 kb on + strand at 576.850 kb on + strand at 576.850 kb on + strand at 576.851 kb on - strand at 576.851 kb on - strand at 576.867 kb on + strand at 576.867 kb on + strand at 576.867 kb on + strand at 576.868 kb on - strand at 576.868 kb on - strand at 576.868 kb on - strand at 576.919 kb on + strand at 576.919 kb on + strand at 576.920 kb on - strand at 576.925 kb on + strand at 576.925 kb on + strand at 576.925 kb on + strand at 576.925 kb on + strand at 576.925 kb on + strand at 576.925 kb on + strand at 576.925 kb on + strand at 576.925 kb on + strand at 576.925 kb on + strand at 576.925 kb on + strand at 576.925 kb on + strand at 576.925 kb on + strand at 576.926 kb on - strand at 576.926 kb on - strand at 576.926 kb on - strand at 576.926 kb on - strand at 576.926 kb on - strand at 576.926 kb on - strand at 576.926 kb on - strand at 576.926 kb on - strand at 576.926 kb on - strand at 576.926 kb on - strand at 576.954 kb on + strand at 576.981 kb on + strand at 576.982 kb on - strand at 576.982 kb on - strand at 576.997 kb on + strand at 576.997 kb on + strand at 576.997 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 574,351 + OH686_02720 0.43 -1.0 574,351 + OH686_02720 0.43 -0.2 574,351 + OH686_02720 0.43 -0.0 574,351 + OH686_02720 0.43 -1.0 574,531 + OH686_02720 0.66 +0.9 574,531 + OH686_02720 0.66 +0.1 574,531 + OH686_02720 0.66 -0.3 574,531 + OH686_02720 0.66 -0.5 574,531 + OH686_02720 0.66 -0.9 574,531 + OH686_02720 0.66 +1.9 574,532 - OH686_02720 0.66 -0.8 574,532 - OH686_02720 0.66 +0.0 574,532 - OH686_02720 0.66 -1.3 574,532 - OH686_02720 0.66 -0.6 574,532 - OH686_02720 0.66 -0.3 574,611 + OH686_02720 0.76 +0.0 574,612 - OH686_02720 0.76 +0.0 574,654 + OH686_02720 0.81 -0.2 574,654 + OH686_02720 0.81 +0.2 574,655 - OH686_02720 0.81 -1.5 574,699 - OH686_02720 0.87 +1.2 574,745 + +0.6 574,746 - -0.3 574,746 - +0.6 574,802 + -0.4 574,864 - OH686_02725 0.11 -1.8 574,895 + OH686_02725 0.19 -0.5 574,895 + OH686_02725 0.19 -0.5 574,895 + OH686_02725 0.19 -1.7 574,895 + OH686_02725 0.19 -0.6 574,895 + OH686_02725 0.19 -1.0 574,895 + OH686_02725 0.19 -1.4 574,896 - OH686_02725 0.19 -0.3 574,896 - OH686_02725 0.19 -0.5 574,896 - OH686_02725 0.19 -1.3 574,896 - OH686_02725 0.19 -0.2 575,220 + -0.1 575,220 + -0.4 575,220 + +0.0 575,220 + -1.4 575,221 - +0.2 575,228 + +0.3 575,228 + -0.5 575,228 + +0.3 575,228 + +2.3 575,407 + OH686_02730 0.18 +0.7 575,408 - OH686_02730 0.18 -0.7 575,408 - OH686_02730 0.18 -2.0 575,410 + OH686_02730 0.18 -0.3 575,411 - OH686_02730 0.18 +0.2 575,411 - OH686_02730 0.18 -0.6 575,411 - OH686_02730 0.18 +1.0 575,411 - OH686_02730 0.18 -0.6 575,411 - OH686_02730 0.18 -0.2 575,411 - OH686_02730 0.18 +0.3 575,411 - OH686_02730 0.18 -0.5 575,614 + OH686_02730 0.46 -0.7 575,614 + OH686_02730 0.46 +0.1 575,618 - OH686_02730 0.47 -0.6 575,618 - OH686_02730 0.47 -1.5 575,664 - OH686_02730 0.53 +0.2 575,720 + OH686_02730 0.61 -0.0 575,731 - OH686_02730 0.62 -0.8 575,731 - OH686_02730 0.62 -0.4 575,800 + OH686_02730 0.72 -0.3 575,800 + OH686_02730 0.72 +0.3 575,801 - OH686_02730 0.72 -1.0 575,834 - OH686_02730 0.77 -0.3 575,853 + OH686_02730 0.79 -1.3 575,853 + OH686_02730 0.79 -0.6 575,853 + OH686_02730 0.79 -0.2 575,854 - OH686_02730 0.79 -1.1 575,924 - OH686_02730 0.89 -0.3 575,950 + -0.8 575,998 + -0.3 575,998 + -0.4 575,998 + +0.8 575,998 + +0.7 575,998 + -0.3 575,998 + -0.6 575,998 + -1.1 575,998 + -0.1 575,998 + -0.3 575,998 + -0.3 575,998 + -0.3 575,998 + -0.5 575,998 + -0.2 575,998 + -1.0 575,998 + -0.4 575,998 + +0.2 575,999 - -0.9 575,999 - -1.2 575,999 - -0.6 575,999 - +1.3 575,999 - -0.3 575,999 - +0.5 575,999 - +0.0 576,006 + -0.1 576,006 + +0.7 576,006 + -0.9 576,006 + +0.0 576,006 + -0.3 576,027 - -0.3 576,027 - -2.0 576,034 + -0.4 576,174 + OH686_02735 0.18 -2.5 576,174 + OH686_02735 0.18 -0.4 576,174 + OH686_02735 0.18 -1.3 576,174 + OH686_02735 0.18 -2.2 576,174 + OH686_02735 0.18 -1.2 576,174 + OH686_02735 0.18 -0.5 576,207 - OH686_02735 0.22 -1.9 576,219 + OH686_02735 0.24 +0.0 576,219 + OH686_02735 0.24 -1.8 576,237 + OH686_02735 0.26 -0.5 576,237 + OH686_02735 0.26 -2.0 576,237 + OH686_02735 0.26 -2.1 576,238 - OH686_02735 0.26 -1.0 576,238 - OH686_02735 0.26 +0.0 576,238 - OH686_02735 0.26 -1.1 576,238 - OH686_02735 0.26 -0.5 576,238 - OH686_02735 0.26 -0.3 576,238 - OH686_02735 0.26 -0.3 576,238 - OH686_02735 0.26 +0.0 576,238 - OH686_02735 0.26 +0.0 576,283 + OH686_02735 0.31 -0.8 576,283 + OH686_02735 0.31 -2.1 576,283 + OH686_02735 0.31 -1.0 576,283 + OH686_02735 0.31 -1.0 576,283 + OH686_02735 0.31 -2.1 576,284 - OH686_02735 0.31 +0.0 576,284 - OH686_02735 0.31 -0.3 576,313 + OH686_02735 0.35 -1.2 576,313 + OH686_02735 0.35 -2.0 576,314 - OH686_02735 0.35 -1.0 576,354 + OH686_02735 0.40 -1.3 576,354 + OH686_02735 0.40 +1.0 576,354 + OH686_02735 0.40 -0.8 576,385 - OH686_02735 0.43 -0.8 576,494 + OH686_02735 0.56 -0.8 576,494 + OH686_02735 0.56 -1.1 576,494 + OH686_02735 0.56 -1.0 576,494 + OH686_02735 0.56 +1.3 576,494 + OH686_02735 0.56 -0.8 576,495 - OH686_02735 0.57 -1.5 576,495 - OH686_02735 0.57 -1.3 576,837 - -1.5 576,847 + -2.4 576,847 + +0.0 576,847 + -1.7 576,847 + -2.2 576,847 + -0.4 576,847 + -0.3 576,847 + -1.0 576,847 + -1.4 576,847 + -2.5 576,847 + -0.5 576,847 + +0.0 576,847 + -1.5 576,847 + -1.0 576,847 + -1.0 576,847 + -1.0 576,847 + -0.8 576,848 - +0.2 576,848 - -2.8 576,848 - -1.0 576,848 - -1.0 576,848 - -2.0 576,848 - +0.0 576,848 - -1.8 576,848 - -0.3 576,848 - -1.0 576,848 - -0.3 576,848 - -1.7 576,850 + -1.8 576,850 + +0.0 576,850 + -0.3 576,850 + +0.7 576,851 - -0.5 576,851 - -0.5 576,867 + -0.1 576,867 + -2.0 576,867 + -0.9 576,868 - +0.3 576,868 - -0.2 576,868 - -1.0 576,919 + -2.8 576,919 + -0.6 576,920 - +0.4 576,925 + -0.2 576,925 + -1.8 576,925 + -0.8 576,925 + -0.4 576,925 + -1.9 576,925 + +1.3 576,925 + +0.0 576,925 + -0.6 576,925 + -0.8 576,925 + -0.1 576,925 + -0.9 576,925 + -3.6 576,926 - +0.2 576,926 - -0.5 576,926 - -0.4 576,926 - -0.8 576,926 - +0.4 576,926 - -2.0 576,926 - -0.2 576,926 - +0.3 576,926 - -0.5 576,926 - +0.1 576,954 + +0.1 576,981 + +0.0 576,982 - -0.4 576,982 - -0.9 576,997 + +0.2 576,997 + +0.6 576,997 + -0.5
Or see this region's nucleotide sequence