Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4515

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4514 and Echvi_4515 overlap by 1 nucleotidesEchvi_4515 and Echvi_4516 are separated by 65 nucleotides Echvi_4514: Echvi_4514 - Ribulose kinase, at 5,391,444 to 5,393,117 _4514 Echvi_4515: Echvi_4515 - transporter, SSS family, at 5,393,117 to 5,394,619 _4515 Echvi_4516: Echvi_4516 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 5,394,685 to 5,395,614 _4516 Position (kb) 5393 5394 5395Strain fitness (log2 ratio) -2 -1 0 1 2at 5392.219 kb on - strand, within Echvi_4514at 5392.226 kb on + strand, within Echvi_4514at 5392.254 kb on - strand, within Echvi_4514at 5392.254 kb on - strand, within Echvi_4514at 5392.262 kb on + strand, within Echvi_4514at 5392.263 kb on - strand, within Echvi_4514at 5392.410 kb on + strand, within Echvi_4514at 5392.411 kb on - strand, within Echvi_4514at 5392.443 kb on + strand, within Echvi_4514at 5392.444 kb on - strand, within Echvi_4514at 5392.502 kb on + strand, within Echvi_4514at 5392.503 kb on - strand, within Echvi_4514at 5392.598 kb on + strand, within Echvi_4514at 5392.599 kb on - strand, within Echvi_4514at 5392.599 kb on - strand, within Echvi_4514at 5392.625 kb on + strand, within Echvi_4514at 5392.666 kb on + strand, within Echvi_4514at 5392.748 kb on + strand, within Echvi_4514at 5392.748 kb on + strand, within Echvi_4514at 5392.764 kb on + strand, within Echvi_4514at 5392.810 kb on - strand, within Echvi_4514at 5392.856 kb on + strand, within Echvi_4514at 5392.857 kb on - strand, within Echvi_4514at 5392.857 kb on - strand, within Echvi_4514at 5392.857 kb on - strand, within Echvi_4514at 5392.961 kb on + strandat 5392.987 kb on + strandat 5392.988 kb on - strandat 5392.988 kb on - strandat 5392.989 kb on + strandat 5393.051 kb on + strandat 5393.052 kb on - strandat 5393.215 kb on + strandat 5393.215 kb on + strandat 5393.216 kb on - strandat 5393.216 kb on - strandat 5393.216 kb on - strandat 5393.248 kb on + strandat 5393.347 kb on + strand, within Echvi_4515at 5393.347 kb on + strand, within Echvi_4515at 5393.348 kb on - strand, within Echvi_4515at 5393.363 kb on + strand, within Echvi_4515at 5393.524 kb on + strand, within Echvi_4515at 5393.524 kb on + strand, within Echvi_4515at 5393.614 kb on + strand, within Echvi_4515at 5393.614 kb on + strand, within Echvi_4515at 5393.662 kb on + strand, within Echvi_4515at 5393.663 kb on - strand, within Echvi_4515at 5393.667 kb on + strand, within Echvi_4515at 5393.728 kb on - strand, within Echvi_4515at 5393.790 kb on + strand, within Echvi_4515at 5393.790 kb on + strand, within Echvi_4515at 5393.846 kb on + strand, within Echvi_4515at 5393.862 kb on + strand, within Echvi_4515at 5393.901 kb on - strand, within Echvi_4515at 5393.907 kb on + strand, within Echvi_4515at 5393.908 kb on - strand, within Echvi_4515at 5393.971 kb on + strand, within Echvi_4515at 5393.972 kb on - strand, within Echvi_4515at 5393.972 kb on - strand, within Echvi_4515at 5393.973 kb on - strand, within Echvi_4515at 5394.065 kb on + strand, within Echvi_4515at 5394.066 kb on - strand, within Echvi_4515at 5394.068 kb on + strand, within Echvi_4515at 5394.069 kb on - strand, within Echvi_4515at 5394.069 kb on - strand, within Echvi_4515at 5394.093 kb on - strand, within Echvi_4515at 5394.104 kb on + strand, within Echvi_4515at 5394.104 kb on + strand, within Echvi_4515at 5394.104 kb on + strand, within Echvi_4515at 5394.105 kb on - strand, within Echvi_4515at 5394.105 kb on - strand, within Echvi_4515at 5394.123 kb on + strand, within Echvi_4515at 5394.124 kb on - strand, within Echvi_4515at 5394.127 kb on + strand, within Echvi_4515at 5394.128 kb on - strand, within Echvi_4515at 5394.155 kb on + strand, within Echvi_4515at 5394.164 kb on + strand, within Echvi_4515at 5394.195 kb on - strand, within Echvi_4515at 5394.226 kb on + strand, within Echvi_4515at 5394.227 kb on - strand, within Echvi_4515at 5394.227 kb on - strand, within Echvi_4515at 5394.238 kb on + strand, within Echvi_4515at 5394.253 kb on + strand, within Echvi_4515at 5394.261 kb on + strand, within Echvi_4515at 5394.261 kb on + strand, within Echvi_4515at 5394.261 kb on + strand, within Echvi_4515at 5394.261 kb on + strand, within Echvi_4515at 5394.262 kb on - strand, within Echvi_4515at 5394.262 kb on - strand, within Echvi_4515at 5394.262 kb on - strand, within Echvi_4515at 5394.262 kb on - strand, within Echvi_4515at 5394.301 kb on - strand, within Echvi_4515at 5394.301 kb on - strand, within Echvi_4515at 5394.301 kb on - strand, within Echvi_4515at 5394.369 kb on - strand, within Echvi_4515at 5394.369 kb on - strand, within Echvi_4515at 5394.377 kb on - strand, within Echvi_4515at 5394.389 kb on + strand, within Echvi_4515at 5394.390 kb on - strand, within Echvi_4515at 5394.415 kb on - strand, within Echvi_4515at 5394.514 kb on + strandat 5394.514 kb on + strandat 5394.514 kb on + strandat 5394.515 kb on - strandat 5394.515 kb on - strandat 5394.523 kb on + strandat 5394.523 kb on + strandat 5394.523 kb on + strandat 5394.524 kb on - strandat 5394.524 kb on - strandat 5394.577 kb on + strandat 5394.578 kb on - strandat 5394.579 kb on + strandat 5394.579 kb on + strandat 5394.580 kb on - strandat 5394.580 kb on - strandat 5394.607 kb on + strandat 5394.608 kb on - strandat 5394.621 kb on + strandat 5394.621 kb on + strandat 5394.621 kb on + strandat 5394.622 kb on - strandat 5394.707 kb on - strandat 5394.712 kb on - strandat 5394.823 kb on + strand, within Echvi_4516at 5394.839 kb on + strand, within Echvi_4516at 5394.839 kb on + strand, within Echvi_4516at 5394.933 kb on - strand, within Echvi_4516at 5394.944 kb on + strand, within Echvi_4516at 5394.944 kb on + strand, within Echvi_4516at 5394.986 kb on + strand, within Echvi_4516at 5394.998 kb on - strand, within Echvi_4516at 5395.064 kb on + strand, within Echvi_4516at 5395.073 kb on - strand, within Echvi_4516at 5395.111 kb on - strand, within Echvi_4516at 5395.176 kb on + strand, within Echvi_4516at 5395.177 kb on - strand, within Echvi_4516at 5395.188 kb on + strand, within Echvi_4516at 5395.189 kb on - strand, within Echvi_4516at 5395.189 kb on - strand, within Echvi_4516at 5395.193 kb on + strand, within Echvi_4516at 5395.193 kb on + strand, within Echvi_4516at 5395.215 kb on + strand, within Echvi_4516at 5395.216 kb on - strand, within Echvi_4516at 5395.216 kb on - strand, within Echvi_4516at 5395.218 kb on + strand, within Echvi_4516at 5395.218 kb on + strand, within Echvi_4516at 5395.218 kb on + strand, within Echvi_4516at 5395.219 kb on - strand, within Echvi_4516at 5395.219 kb on - strand, within Echvi_4516at 5395.270 kb on - strand, within Echvi_4516at 5395.270 kb on - strand, within Echvi_4516at 5395.270 kb on - strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.271 kb on + strand, within Echvi_4516at 5395.272 kb on - strand, within Echvi_4516at 5395.272 kb on - strand, within Echvi_4516at 5395.272 kb on - strand, within Echvi_4516at 5395.275 kb on - strand, within Echvi_4516at 5395.298 kb on + strand, within Echvi_4516at 5395.298 kb on + strand, within Echvi_4516at 5395.298 kb on + strand, within Echvi_4516at 5395.298 kb on + strand, within Echvi_4516at 5395.299 kb on - strand, within Echvi_4516at 5395.299 kb on - strand, within Echvi_4516at 5395.335 kb on + strand, within Echvi_4516at 5395.335 kb on + strand, within Echvi_4516at 5395.335 kb on + strand, within Echvi_4516at 5395.336 kb on - strand, within Echvi_4516at 5395.336 kb on - strand, within Echvi_4516at 5395.367 kb on - strand, within Echvi_4516at 5395.411 kb on + strand, within Echvi_4516at 5395.413 kb on + strand, within Echvi_4516at 5395.413 kb on + strand, within Echvi_4516at 5395.414 kb on - strand, within Echvi_4516at 5395.414 kb on - strand, within Echvi_4516at 5395.432 kb on + strand, within Echvi_4516at 5395.432 kb on + strand, within Echvi_4516at 5395.531 kb on - strandat 5395.554 kb on + strandat 5395.554 kb on + strandat 5395.555 kb on - strandat 5395.555 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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5,392,219 - Echvi_4514 0.46 +0.4
5,392,226 + Echvi_4514 0.47 +0.1
5,392,254 - Echvi_4514 0.48 +0.9
5,392,254 - Echvi_4514 0.48 -0.6
5,392,262 + Echvi_4514 0.49 -0.5
5,392,263 - Echvi_4514 0.49 +0.2
5,392,410 + Echvi_4514 0.58 -0.5
5,392,411 - Echvi_4514 0.58 +1.2
5,392,443 + Echvi_4514 0.60 +0.1
5,392,444 - Echvi_4514 0.60 +0.3
5,392,502 + Echvi_4514 0.63 -0.1
5,392,503 - Echvi_4514 0.63 -0.5
5,392,598 + Echvi_4514 0.69 -2.1
5,392,599 - Echvi_4514 0.69 +0.7
5,392,599 - Echvi_4514 0.69 -1.3
5,392,625 + Echvi_4514 0.71 -0.7
5,392,666 + Echvi_4514 0.73 -1.9
5,392,748 + Echvi_4514 0.78 +2.2
5,392,748 + Echvi_4514 0.78 +0.4
5,392,764 + Echvi_4514 0.79 +0.6
5,392,810 - Echvi_4514 0.82 -0.7
5,392,856 + Echvi_4514 0.84 +0.1
5,392,857 - Echvi_4514 0.84 +0.3
5,392,857 - Echvi_4514 0.84 +0.0
5,392,857 - Echvi_4514 0.84 +0.0
5,392,961 + -0.8
5,392,987 + +0.7
5,392,988 - -0.2
5,392,988 - -2.4
5,392,989 + -0.9
5,393,051 + -0.1
5,393,052 - +0.0
5,393,215 + +0.6
5,393,215 + +0.5
5,393,216 - -0.7
5,393,216 - +0.5
5,393,216 - -0.4
5,393,248 + +0.3
5,393,347 + Echvi_4515 0.15 -0.1
5,393,347 + Echvi_4515 0.15 +0.7
5,393,348 - Echvi_4515 0.15 +0.2
5,393,363 + Echvi_4515 0.16 -0.9
5,393,524 + Echvi_4515 0.27 -2.0
5,393,524 + Echvi_4515 0.27 -0.3
5,393,614 + Echvi_4515 0.33 +0.9
5,393,614 + Echvi_4515 0.33 +0.5
5,393,662 + Echvi_4515 0.36 -1.1
5,393,663 - Echvi_4515 0.36 -0.2
5,393,667 + Echvi_4515 0.37 -1.1
5,393,728 - Echvi_4515 0.41 -0.2
5,393,790 + Echvi_4515 0.45 -0.8
5,393,790 + Echvi_4515 0.45 +0.1
5,393,846 + Echvi_4515 0.49 -1.1
5,393,862 + Echvi_4515 0.50 -0.5
5,393,901 - Echvi_4515 0.52 +0.5
5,393,907 + Echvi_4515 0.53 +0.7
5,393,908 - Echvi_4515 0.53 +2.3
5,393,971 + Echvi_4515 0.57 -0.1
5,393,972 - Echvi_4515 0.57 -1.9
5,393,972 - Echvi_4515 0.57 +0.4
5,393,973 - Echvi_4515 0.57 -1.0
5,394,065 + Echvi_4515 0.63 -0.0
5,394,066 - Echvi_4515 0.63 -0.5
5,394,068 + Echvi_4515 0.63 -0.8
5,394,069 - Echvi_4515 0.63 +0.5
5,394,069 - Echvi_4515 0.63 -0.6
5,394,093 - Echvi_4515 0.65 +0.9
5,394,104 + Echvi_4515 0.66 +0.3
5,394,104 + Echvi_4515 0.66 -1.1
5,394,104 + Echvi_4515 0.66 +1.3
5,394,105 - Echvi_4515 0.66 -0.7
5,394,105 - Echvi_4515 0.66 +0.1
5,394,123 + Echvi_4515 0.67 -1.3
5,394,124 - Echvi_4515 0.67 -0.1
5,394,127 + Echvi_4515 0.67 -0.8
5,394,128 - Echvi_4515 0.67 -0.1
5,394,155 + Echvi_4515 0.69 +0.4
5,394,164 + Echvi_4515 0.70 -1.0
5,394,195 - Echvi_4515 0.72 +0.2
5,394,226 + Echvi_4515 0.74 -0.5
5,394,227 - Echvi_4515 0.74 +0.9
5,394,227 - Echvi_4515 0.74 +1.4
5,394,238 + Echvi_4515 0.75 -0.5
5,394,253 + Echvi_4515 0.76 +0.2
5,394,261 + Echvi_4515 0.76 +0.2
5,394,261 + Echvi_4515 0.76 -0.9
5,394,261 + Echvi_4515 0.76 -0.2
5,394,261 + Echvi_4515 0.76 +0.2
5,394,262 - Echvi_4515 0.76 -0.8
5,394,262 - Echvi_4515 0.76 +0.2
5,394,262 - Echvi_4515 0.76 -0.6
5,394,262 - Echvi_4515 0.76 -1.0
5,394,301 - Echvi_4515 0.79 +2.0
5,394,301 - Echvi_4515 0.79 -0.1
5,394,301 - Echvi_4515 0.79 -1.3
5,394,369 - Echvi_4515 0.83 -1.8
5,394,369 - Echvi_4515 0.83 +0.1
5,394,377 - Echvi_4515 0.84 +0.8
5,394,389 + Echvi_4515 0.85 +0.0
5,394,390 - Echvi_4515 0.85 -0.0
5,394,415 - Echvi_4515 0.86 -0.6
5,394,514 + +0.4
5,394,514 + +0.2
5,394,514 + -1.0
5,394,515 - -0.4
5,394,515 - +1.0
5,394,523 + -1.5
5,394,523 + +0.8
5,394,523 + -0.7
5,394,524 - -0.8
5,394,524 - -0.7
5,394,577 + -0.7
5,394,578 - -0.2
5,394,579 + -1.1
5,394,579 + +0.2
5,394,580 - +0.1
5,394,580 - -0.5
5,394,607 + -0.2
5,394,608 - +0.1
5,394,621 + +0.5
5,394,621 + +1.6
5,394,621 + -1.6
5,394,622 - -0.5
5,394,707 - -0.3
5,394,712 - +0.2
5,394,823 + Echvi_4516 0.15 -0.1
5,394,839 + Echvi_4516 0.17 +0.3
5,394,839 + Echvi_4516 0.17 +0.6
5,394,933 - Echvi_4516 0.27 +1.3
5,394,944 + Echvi_4516 0.28 -2.0
5,394,944 + Echvi_4516 0.28 +0.8
5,394,986 + Echvi_4516 0.32 -0.5
5,394,998 - Echvi_4516 0.34 -0.3
5,395,064 + Echvi_4516 0.41 -0.3
5,395,073 - Echvi_4516 0.42 -1.1
5,395,111 - Echvi_4516 0.46 +0.0
5,395,176 + Echvi_4516 0.53 +2.3
5,395,177 - Echvi_4516 0.53 -0.8
5,395,188 + Echvi_4516 0.54 -0.6
5,395,189 - Echvi_4516 0.54 -0.1
5,395,189 - Echvi_4516 0.54 -1.1
5,395,193 + Echvi_4516 0.55 +0.1
5,395,193 + Echvi_4516 0.55 -0.1
5,395,215 + Echvi_4516 0.57 +1.5
5,395,216 - Echvi_4516 0.57 -1.0
5,395,216 - Echvi_4516 0.57 -1.3
5,395,218 + Echvi_4516 0.57 -0.7
5,395,218 + Echvi_4516 0.57 -0.6
5,395,218 + Echvi_4516 0.57 +0.8
5,395,219 - Echvi_4516 0.57 +0.5
5,395,219 - Echvi_4516 0.57 -1.8
5,395,270 - Echvi_4516 0.63 -0.6
5,395,270 - Echvi_4516 0.63 -0.4
5,395,270 - Echvi_4516 0.63 +0.9
5,395,271 + Echvi_4516 0.63 -0.4
5,395,271 + Echvi_4516 0.63 +0.1
5,395,271 + Echvi_4516 0.63 -2.2
5,395,271 + Echvi_4516 0.63 -0.6
5,395,271 + Echvi_4516 0.63 -0.2
5,395,271 + Echvi_4516 0.63 +0.4
5,395,272 - Echvi_4516 0.63 -1.5
5,395,272 - Echvi_4516 0.63 +1.6
5,395,272 - Echvi_4516 0.63 +0.0
5,395,275 - Echvi_4516 0.63 -0.3
5,395,298 + Echvi_4516 0.66 +0.5
5,395,298 + Echvi_4516 0.66 -1.2
5,395,298 + Echvi_4516 0.66 +1.2
5,395,298 + Echvi_4516 0.66 -0.0
5,395,299 - Echvi_4516 0.66 -0.6
5,395,299 - Echvi_4516 0.66 +0.9
5,395,335 + Echvi_4516 0.70 -0.3
5,395,335 + Echvi_4516 0.70 -1.6
5,395,335 + Echvi_4516 0.70 -0.6
5,395,336 - Echvi_4516 0.70 +1.1
5,395,336 - Echvi_4516 0.70 +1.2
5,395,367 - Echvi_4516 0.73 +1.5
5,395,411 + Echvi_4516 0.78 -1.0
5,395,413 + Echvi_4516 0.78 +0.3
5,395,413 + Echvi_4516 0.78 -0.7
5,395,414 - Echvi_4516 0.78 -0.6
5,395,414 - Echvi_4516 0.78 +0.1
5,395,432 + Echvi_4516 0.80 +0.1
5,395,432 + Echvi_4516 0.80 +0.7
5,395,531 - -0.1
5,395,554 + -0.3
5,395,554 + +0.0
5,395,555 - -1.0
5,395,555 - +1.0

Or see this region's nucleotide sequence