Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1232

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1231 and Echvi_1232 are separated by 22 nucleotidesEchvi_1232 and Echvi_1233 are separated by 55 nucleotides Echvi_1231: Echvi_1231 - Arabinose efflux permease, at 1,415,588 to 1,416,754 _1231 Echvi_1232: Echvi_1232 - TfoX N-terminal domain., at 1,416,777 to 1,417,163 _1232 Echvi_1233: Echvi_1233 - Mismatch repair ATPase (MutS family), at 1,417,219 to 1,418,544 _1233 Position (kb) 1416 1417 1418Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1415.793 kb on - strand, within Echvi_1231at 1415.825 kb on + strand, within Echvi_1231at 1415.825 kb on + strand, within Echvi_1231at 1415.826 kb on - strand, within Echvi_1231at 1415.862 kb on - strand, within Echvi_1231at 1415.965 kb on + strand, within Echvi_1231at 1415.965 kb on + strand, within Echvi_1231at 1415.965 kb on + strand, within Echvi_1231at 1415.966 kb on - strand, within Echvi_1231at 1415.966 kb on - strand, within Echvi_1231at 1416.016 kb on + strand, within Echvi_1231at 1416.023 kb on + strand, within Echvi_1231at 1416.024 kb on - strand, within Echvi_1231at 1416.046 kb on + strand, within Echvi_1231at 1416.046 kb on + strand, within Echvi_1231at 1416.047 kb on - strand, within Echvi_1231at 1416.048 kb on + strand, within Echvi_1231at 1416.056 kb on + strand, within Echvi_1231at 1416.056 kb on + strand, within Echvi_1231at 1416.056 kb on + strand, within Echvi_1231at 1416.056 kb on + strand, within Echvi_1231at 1416.056 kb on + strandat 1416.057 kb on - strand, within Echvi_1231at 1416.057 kb on - strand, within Echvi_1231at 1416.062 kb on + strand, within Echvi_1231at 1416.100 kb on + strand, within Echvi_1231at 1416.100 kb on + strand, within Echvi_1231at 1416.101 kb on - strand, within Echvi_1231at 1416.101 kb on - strand, within Echvi_1231at 1416.101 kb on - strand, within Echvi_1231at 1416.101 kb on - strand, within Echvi_1231at 1416.101 kb on - strand, within Echvi_1231at 1416.112 kb on - strand, within Echvi_1231at 1416.281 kb on + strand, within Echvi_1231at 1416.282 kb on - strand, within Echvi_1231at 1416.282 kb on - strand, within Echvi_1231at 1416.282 kb on - strand, within Echvi_1231at 1416.292 kb on + strand, within Echvi_1231at 1416.382 kb on - strand, within Echvi_1231at 1416.404 kb on + strand, within Echvi_1231at 1416.411 kb on + strand, within Echvi_1231at 1416.412 kb on - strand, within Echvi_1231at 1416.413 kb on + strand, within Echvi_1231at 1416.413 kb on + strand, within Echvi_1231at 1416.413 kb on + strand, within Echvi_1231at 1416.414 kb on - strand, within Echvi_1231at 1416.414 kb on - strand, within Echvi_1231at 1416.414 kb on - strand, within Echvi_1231at 1416.472 kb on + strand, within Echvi_1231at 1416.472 kb on + strand, within Echvi_1231at 1416.482 kb on + strand, within Echvi_1231at 1416.482 kb on + strand, within Echvi_1231at 1416.482 kb on + strand, within Echvi_1231at 1416.483 kb on - strand, within Echvi_1231at 1416.483 kb on - strand, within Echvi_1231at 1416.491 kb on + strand, within Echvi_1231at 1416.521 kb on + strand, within Echvi_1231at 1416.521 kb on + strand, within Echvi_1231at 1416.521 kb on + strand, within Echvi_1231at 1416.522 kb on - strand, within Echvi_1231at 1416.575 kb on + strand, within Echvi_1231at 1416.575 kb on + strand, within Echvi_1231at 1416.584 kb on - strand, within Echvi_1231at 1416.605 kb on + strand, within Echvi_1231at 1416.606 kb on - strand, within Echvi_1231at 1416.616 kb on + strand, within Echvi_1231at 1416.660 kb on - strandat 1416.723 kb on - strandat 1416.723 kb on - strandat 1416.723 kb on - strandat 1416.727 kb on + strandat 1416.728 kb on - strandat 1416.728 kb on - strandat 1416.926 kb on + strand, within Echvi_1232at 1416.927 kb on - strand, within Echvi_1232at 1416.927 kb on - strand, within Echvi_1232at 1416.955 kb on + strand, within Echvi_1232at 1416.956 kb on - strand, within Echvi_1232at 1417.004 kb on + strand, within Echvi_1232at 1417.005 kb on - strand, within Echvi_1232at 1417.026 kb on - strand, within Echvi_1232at 1417.032 kb on + strand, within Echvi_1232at 1417.095 kb on - strand, within Echvi_1232at 1417.101 kb on - strand, within Echvi_1232at 1417.104 kb on + strand, within Echvi_1232at 1417.105 kb on - strand, within Echvi_1232at 1417.115 kb on + strand, within Echvi_1232at 1417.115 kb on + strand, within Echvi_1232at 1417.116 kb on - strand, within Echvi_1232at 1417.116 kb on - strand, within Echvi_1232at 1417.116 kb on - strand, within Echvi_1232at 1417.116 kb on - strand, within Echvi_1232at 1417.117 kb on + strand, within Echvi_1232at 1417.118 kb on - strand, within Echvi_1232at 1417.220 kb on + strandat 1417.260 kb on + strandat 1417.267 kb on - strandat 1417.267 kb on - strandat 1417.267 kb on - strandat 1417.267 kb on - strandat 1417.267 kb on - strandat 1417.316 kb on + strandat 1417.317 kb on - strandat 1417.317 kb on - strandat 1417.336 kb on + strandat 1417.475 kb on + strand, within Echvi_1233at 1417.475 kb on + strand, within Echvi_1233at 1417.476 kb on - strand, within Echvi_1233at 1417.476 kb on - strand, within Echvi_1233at 1417.563 kb on + strand, within Echvi_1233at 1417.564 kb on - strand, within Echvi_1233at 1417.564 kb on - strand, within Echvi_1233at 1417.573 kb on + strand, within Echvi_1233at 1417.647 kb on - strand, within Echvi_1233at 1417.647 kb on - strand, within Echvi_1233at 1417.700 kb on + strand, within Echvi_1233at 1417.701 kb on - strand, within Echvi_1233at 1417.701 kb on - strand, within Echvi_1233at 1417.746 kb on + strand, within Echvi_1233at 1417.787 kb on - strand, within Echvi_1233at 1417.787 kb on - strand, within Echvi_1233at 1417.831 kb on + strand, within Echvi_1233at 1417.832 kb on - strand, within Echvi_1233at 1417.846 kb on + strand, within Echvi_1233at 1417.846 kb on + strand, within Echvi_1233at 1417.846 kb on + strand, within Echvi_1233at 1417.847 kb on - strand, within Echvi_1233at 1417.847 kb on - strand, within Echvi_1233at 1417.847 kb on - strand, within Echvi_1233at 1417.861 kb on - strand, within Echvi_1233at 1417.940 kb on - strand, within Echvi_1233at 1417.940 kb on - strand, within Echvi_1233at 1417.974 kb on - strand, within Echvi_1233at 1418.033 kb on - strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.040 kb on + strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.041 kb on - strand, within Echvi_1233at 1418.069 kb on - strand, within Echvi_1233at 1418.094 kb on - strand, within Echvi_1233at 1418.120 kb on - strand, within Echvi_1233at 1418.149 kb on + strand, within Echvi_1233

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,415,793 - Echvi_1231 0.18 -0.3
1,415,825 + Echvi_1231 0.20 -1.9
1,415,825 + Echvi_1231 0.20 +0.5
1,415,826 - Echvi_1231 0.20 -0.2
1,415,862 - Echvi_1231 0.23 +0.3
1,415,965 + Echvi_1231 0.32 +0.6
1,415,965 + Echvi_1231 0.32 -1.1
1,415,965 + Echvi_1231 0.32 +2.0
1,415,966 - Echvi_1231 0.32 -0.5
1,415,966 - Echvi_1231 0.32 +0.6
1,416,016 + Echvi_1231 0.37 -0.2
1,416,023 + Echvi_1231 0.37 -0.1
1,416,024 - Echvi_1231 0.37 +0.3
1,416,046 + Echvi_1231 0.39 +0.5
1,416,046 + Echvi_1231 0.39 -0.8
1,416,047 - Echvi_1231 0.39 +0.1
1,416,048 + Echvi_1231 0.39 -1.2
1,416,056 + Echvi_1231 0.40 +0.1
1,416,056 + Echvi_1231 0.40 +0.1
1,416,056 + Echvi_1231 0.40 -0.1
1,416,056 + Echvi_1231 0.40 -0.8
1,416,056 + +0.9
1,416,057 - Echvi_1231 0.40 +0.4
1,416,057 - Echvi_1231 0.40 -0.3
1,416,062 + Echvi_1231 0.41 +3.3
1,416,100 + Echvi_1231 0.44 +2.6
1,416,100 + Echvi_1231 0.44 -0.7
1,416,101 - Echvi_1231 0.44 -1.8
1,416,101 - Echvi_1231 0.44 -1.0
1,416,101 - Echvi_1231 0.44 -0.9
1,416,101 - Echvi_1231 0.44 +3.3
1,416,101 - Echvi_1231 0.44 -0.2
1,416,112 - Echvi_1231 0.45 -0.2
1,416,281 + Echvi_1231 0.59 +0.4
1,416,282 - Echvi_1231 0.59 -1.4
1,416,282 - Echvi_1231 0.59 +1.0
1,416,282 - Echvi_1231 0.59 +0.7
1,416,292 + Echvi_1231 0.60 -1.7
1,416,382 - Echvi_1231 0.68 +0.2
1,416,404 + Echvi_1231 0.70 +2.5
1,416,411 + Echvi_1231 0.71 +0.6
1,416,412 - Echvi_1231 0.71 -0.0
1,416,413 + Echvi_1231 0.71 +0.9
1,416,413 + Echvi_1231 0.71 +1.4
1,416,413 + Echvi_1231 0.71 -0.8
1,416,414 - Echvi_1231 0.71 -1.0
1,416,414 - Echvi_1231 0.71 +0.7
1,416,414 - Echvi_1231 0.71 +0.0
1,416,472 + Echvi_1231 0.76 +1.7
1,416,472 + Echvi_1231 0.76 +0.8
1,416,482 + Echvi_1231 0.77 -0.7
1,416,482 + Echvi_1231 0.77 +1.3
1,416,482 + Echvi_1231 0.77 -0.3
1,416,483 - Echvi_1231 0.77 +1.0
1,416,483 - Echvi_1231 0.77 -1.4
1,416,491 + Echvi_1231 0.77 +0.9
1,416,521 + Echvi_1231 0.80 +1.1
1,416,521 + Echvi_1231 0.80 -1.3
1,416,521 + Echvi_1231 0.80 -0.8
1,416,522 - Echvi_1231 0.80 +0.1
1,416,575 + Echvi_1231 0.85 +0.4
1,416,575 + Echvi_1231 0.85 +0.5
1,416,584 - Echvi_1231 0.85 +0.5
1,416,605 + Echvi_1231 0.87 -0.3
1,416,606 - Echvi_1231 0.87 -0.9
1,416,616 + Echvi_1231 0.88 +0.9
1,416,660 - -0.7
1,416,723 - -0.5
1,416,723 - -1.9
1,416,723 - -1.1
1,416,727 + +0.7
1,416,728 - -0.7
1,416,728 - +0.1
1,416,926 + Echvi_1232 0.39 -2.9
1,416,927 - Echvi_1232 0.39 -1.4
1,416,927 - Echvi_1232 0.39 -0.6
1,416,955 + Echvi_1232 0.46 -0.8
1,416,956 - Echvi_1232 0.46 -0.9
1,417,004 + Echvi_1232 0.59 -1.2
1,417,005 - Echvi_1232 0.59 +0.9
1,417,026 - Echvi_1232 0.64 -0.1
1,417,032 + Echvi_1232 0.66 -1.2
1,417,095 - Echvi_1232 0.82 +0.1
1,417,101 - Echvi_1232 0.84 -0.7
1,417,104 + Echvi_1232 0.84 -0.5
1,417,105 - Echvi_1232 0.85 -0.1
1,417,115 + Echvi_1232 0.87 +0.4
1,417,115 + Echvi_1232 0.87 -2.1
1,417,116 - Echvi_1232 0.88 -1.4
1,417,116 - Echvi_1232 0.88 +0.5
1,417,116 - Echvi_1232 0.88 +0.1
1,417,116 - Echvi_1232 0.88 -1.1
1,417,117 + Echvi_1232 0.88 +0.1
1,417,118 - Echvi_1232 0.88 -0.3
1,417,220 + +1.1
1,417,260 + +0.7
1,417,267 - -0.8
1,417,267 - -0.4
1,417,267 - -1.3
1,417,267 - -2.4
1,417,267 - -1.1
1,417,316 + +1.5
1,417,317 - +2.7
1,417,317 - +1.2
1,417,336 + -1.5
1,417,475 + Echvi_1233 0.19 +0.1
1,417,475 + Echvi_1233 0.19 +0.5
1,417,476 - Echvi_1233 0.19 -2.1
1,417,476 - Echvi_1233 0.19 -0.2
1,417,563 + Echvi_1233 0.26 +2.5
1,417,564 - Echvi_1233 0.26 +0.1
1,417,564 - Echvi_1233 0.26 +1.7
1,417,573 + Echvi_1233 0.27 -0.2
1,417,647 - Echvi_1233 0.32 -0.7
1,417,647 - Echvi_1233 0.32 -0.3
1,417,700 + Echvi_1233 0.36 -0.3
1,417,701 - Echvi_1233 0.36 -0.4
1,417,701 - Echvi_1233 0.36 -0.0
1,417,746 + Echvi_1233 0.40 +0.1
1,417,787 - Echvi_1233 0.43 +0.7
1,417,787 - Echvi_1233 0.43 -0.8
1,417,831 + Echvi_1233 0.46 -0.3
1,417,832 - Echvi_1233 0.46 +0.0
1,417,846 + Echvi_1233 0.47 -2.0
1,417,846 + Echvi_1233 0.47 +0.7
1,417,846 + Echvi_1233 0.47 -0.2
1,417,847 - Echvi_1233 0.47 +1.7
1,417,847 - Echvi_1233 0.47 -1.4
1,417,847 - Echvi_1233 0.47 -0.4
1,417,861 - Echvi_1233 0.48 +0.5
1,417,940 - Echvi_1233 0.54 +0.5
1,417,940 - Echvi_1233 0.54 -0.2
1,417,974 - Echvi_1233 0.57 +1.5
1,418,033 - Echvi_1233 0.61 +0.2
1,418,040 + Echvi_1233 0.62 -0.9
1,418,040 + Echvi_1233 0.62 +0.0
1,418,040 + Echvi_1233 0.62 +0.1
1,418,040 + Echvi_1233 0.62 +1.5
1,418,040 + Echvi_1233 0.62 +1.6
1,418,040 + Echvi_1233 0.62 -1.2
1,418,040 + Echvi_1233 0.62 +0.7
1,418,040 + Echvi_1233 0.62 -0.8
1,418,040 + Echvi_1233 0.62 -0.5
1,418,040 + Echvi_1233 0.62 -0.4
1,418,040 + Echvi_1233 0.62 -1.6
1,418,040 + Echvi_1233 0.62 -0.3
1,418,040 + Echvi_1233 0.62 +0.7
1,418,040 + Echvi_1233 0.62 -1.0
1,418,040 + Echvi_1233 0.62 -0.1
1,418,040 + Echvi_1233 0.62 +0.1
1,418,040 + Echvi_1233 0.62 -1.9
1,418,041 - Echvi_1233 0.62 +0.2
1,418,041 - Echvi_1233 0.62 -0.2
1,418,041 - Echvi_1233 0.62 +0.4
1,418,041 - Echvi_1233 0.62 +0.2
1,418,041 - Echvi_1233 0.62 +0.2
1,418,041 - Echvi_1233 0.62 -2.4
1,418,041 - Echvi_1233 0.62 -2.5
1,418,041 - Echvi_1233 0.62 +0.6
1,418,041 - Echvi_1233 0.62 +0.9
1,418,041 - Echvi_1233 0.62 -1.8
1,418,041 - Echvi_1233 0.62 +0.1
1,418,041 - Echvi_1233 0.62 +0.9
1,418,041 - Echvi_1233 0.62 +1.6
1,418,041 - Echvi_1233 0.62 +1.0
1,418,041 - Echvi_1233 0.62 -0.6
1,418,041 - Echvi_1233 0.62 -0.6
1,418,041 - Echvi_1233 0.62 +0.2
1,418,041 - Echvi_1233 0.62 -0.4
1,418,041 - Echvi_1233 0.62 -1.3
1,418,069 - Echvi_1233 0.64 -0.2
1,418,094 - Echvi_1233 0.66 +0.6
1,418,120 - Echvi_1233 0.68 -1.3
1,418,149 + Echvi_1233 0.70 +0.9

Or see this region's nucleotide sequence