Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0758

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0755 and Echvi_0756 are separated by 154 nucleotidesEchvi_0756 and Echvi_0757 overlap by 16 nucleotidesEchvi_0757 and Echvi_0758 overlap by 20 nucleotidesEchvi_0758 and Echvi_0759 overlap by 4 nucleotidesEchvi_0759 and Echvi_0760 overlap by 4 nucleotides Echvi_0755: Echvi_0755 - 23S rRNA m2A2503 methyltransferase, at 849,108 to 850,166 _0755 Echvi_0756: Echvi_0756 - hypothetical protein, at 850,321 to 850,791 _0756 Echvi_0757: Echvi_0757 - hypothetical protein, at 850,776 to 850,982 _0757 Echvi_0758: Echvi_0758 - N-acetylmuramic acid 6-phosphate etherase, at 850,963 to 851,769 _0758 Echvi_0759: Echvi_0759 - hypothetical protein, at 851,766 to 852,608 _0759 Echvi_0760: Echvi_0760 - Predicted heme/steroid binding protein, at 852,605 to 852,838 _0760 Position (kb) 850 851 852Strain fitness (log2 ratio) -2 -1 0 1 2at 850.050 kb on + strand, within Echvi_0755at 850.050 kb on + strand, within Echvi_0755at 850.050 kb on + strand, within Echvi_0755at 850.050 kb on + strand, within Echvi_0755at 850.050 kb on + strand, within Echvi_0755at 850.050 kb on + strand, within Echvi_0755at 850.050 kb on + strand, within Echvi_0755at 850.050 kb on + strand, within Echvi_0755at 850.051 kb on - strand, within Echvi_0755at 850.051 kb on - strand, within Echvi_0755at 850.051 kb on - strand, within Echvi_0755at 850.051 kb on - strand, within Echvi_0755at 850.163 kb on - strandat 850.168 kb on - strandat 850.168 kb on - strandat 850.180 kb on + strandat 850.180 kb on + strandat 850.181 kb on - strandat 850.241 kb on + strandat 850.266 kb on - strandat 850.267 kb on + strandat 850.267 kb on + strandat 850.268 kb on - strandat 850.268 kb on - strandat 850.268 kb on - strandat 850.268 kb on - strandat 850.313 kb on - strandat 850.314 kb on + strandat 850.320 kb on + strandat 850.321 kb on - strandat 850.334 kb on + strandat 850.334 kb on + strandat 850.334 kb on + strandat 850.337 kb on + strandat 850.337 kb on + strandat 850.462 kb on + strand, within Echvi_0756at 850.468 kb on - strand, within Echvi_0756at 850.471 kb on - strand, within Echvi_0756at 850.558 kb on + strand, within Echvi_0756at 850.558 kb on + strand, within Echvi_0756at 850.558 kb on + strand, within Echvi_0756at 850.559 kb on - strand, within Echvi_0756at 850.757 kb on + strandat 850.795 kb on - strandat 850.816 kb on - strand, within Echvi_0757at 850.833 kb on - strand, within Echvi_0757at 850.837 kb on - strand, within Echvi_0757at 850.841 kb on - strand, within Echvi_0757at 851.106 kb on + strand, within Echvi_0758at 851.106 kb on + strand, within Echvi_0758at 851.118 kb on + strand, within Echvi_0758at 851.157 kb on + strand, within Echvi_0758at 851.167 kb on - strand, within Echvi_0758at 851.208 kb on + strand, within Echvi_0758at 851.253 kb on - strand, within Echvi_0758at 851.295 kb on + strand, within Echvi_0758at 851.296 kb on - strand, within Echvi_0758at 851.296 kb on - strand, within Echvi_0758at 851.348 kb on + strand, within Echvi_0758at 851.349 kb on - strand, within Echvi_0758at 851.349 kb on - strand, within Echvi_0758at 851.349 kb on - strand, within Echvi_0758at 851.349 kb on - strand, within Echvi_0758at 851.349 kb on - strand, within Echvi_0758at 851.349 kb on - strand, within Echvi_0758at 851.349 kb on - strand, within Echvi_0758at 851.355 kb on + strand, within Echvi_0758at 851.356 kb on - strand, within Echvi_0758at 851.505 kb on + strand, within Echvi_0758at 851.505 kb on + strand, within Echvi_0758at 851.506 kb on - strand, within Echvi_0758at 851.506 kb on - strand, within Echvi_0758at 851.506 kb on - strand, within Echvi_0758at 851.506 kb on - strand, within Echvi_0758at 851.585 kb on + strand, within Echvi_0758at 851.586 kb on - strand, within Echvi_0758at 851.586 kb on - strand, within Echvi_0758at 851.586 kb on - strand, within Echvi_0758at 851.596 kb on - strand, within Echvi_0758at 851.617 kb on + strand, within Echvi_0758at 851.618 kb on - strand, within Echvi_0758at 851.632 kb on + strand, within Echvi_0758at 851.642 kb on - strand, within Echvi_0758at 851.662 kb on + strand, within Echvi_0758at 851.717 kb on - strandat 851.785 kb on + strandat 851.785 kb on + strandat 851.785 kb on + strandat 851.785 kb on + strandat 851.786 kb on - strandat 851.786 kb on - strandat 851.786 kb on - strandat 851.786 kb on - strandat 851.786 kb on - strandat 851.786 kb on - strandat 851.786 kb on - strandat 851.786 kb on - strandat 851.787 kb on + strandat 851.832 kb on + strandat 851.865 kb on - strand, within Echvi_0759at 851.874 kb on - strand, within Echvi_0759at 851.875 kb on + strand, within Echvi_0759at 851.875 kb on + strand, within Echvi_0759at 851.876 kb on - strand, within Echvi_0759at 851.883 kb on + strand, within Echvi_0759at 851.884 kb on - strand, within Echvi_0759at 851.968 kb on + strand, within Echvi_0759at 851.968 kb on + strand, within Echvi_0759at 851.968 kb on + strand, within Echvi_0759at 851.968 kb on + strand, within Echvi_0759at 851.971 kb on + strand, within Echvi_0759at 851.971 kb on + strand, within Echvi_0759at 851.972 kb on - strand, within Echvi_0759at 851.986 kb on + strand, within Echvi_0759at 852.032 kb on + strand, within Echvi_0759at 852.033 kb on - strand, within Echvi_0759at 852.034 kb on + strand, within Echvi_0759at 852.035 kb on - strand, within Echvi_0759at 852.035 kb on - strand, within Echvi_0759at 852.086 kb on + strand, within Echvi_0759at 852.087 kb on - strand, within Echvi_0759at 852.173 kb on - strand, within Echvi_0759at 852.176 kb on + strand, within Echvi_0759at 852.177 kb on - strand, within Echvi_0759at 852.244 kb on + strand, within Echvi_0759at 852.244 kb on + strand, within Echvi_0759at 852.245 kb on - strand, within Echvi_0759at 852.360 kb on + strand, within Echvi_0759at 852.424 kb on + strand, within Echvi_0759at 852.425 kb on - strand, within Echvi_0759at 852.425 kb on - strand, within Echvi_0759at 852.428 kb on - strand, within Echvi_0759at 852.508 kb on + strand, within Echvi_0759at 852.516 kb on - strand, within Echvi_0759at 852.604 kb on - strandat 852.610 kb on + strandat 852.611 kb on - strandat 852.618 kb on - strandat 852.629 kb on - strand, within Echvi_0760at 852.629 kb on - strand, within Echvi_0760at 852.659 kb on - strand, within Echvi_0760at 852.754 kb on - strand, within Echvi_0760at 852.754 kb on - strand, within Echvi_0760at 852.757 kb on + strand, within Echvi_0760at 852.757 kb on + strand, within Echvi_0760at 852.757 kb on + strand, within Echvi_0760at 852.757 kb on + strand, within Echvi_0760at 852.757 kb on + strand, within Echvi_0760at 852.757 kb on + strand, within Echvi_0760at 852.757 kb on + strand, within Echvi_0760at 852.758 kb on - strand, within Echvi_0760at 852.758 kb on - strand, within Echvi_0760at 852.758 kb on - strand, within Echvi_0760at 852.758 kb on - strand, within Echvi_0760at 852.759 kb on + strand, within Echvi_0760

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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850,050 + Echvi_0755 0.89 +1.7
850,050 + Echvi_0755 0.89 -0.7
850,050 + Echvi_0755 0.89 -0.3
850,050 + Echvi_0755 0.89 +0.2
850,050 + Echvi_0755 0.89 +0.8
850,050 + Echvi_0755 0.89 -0.1
850,050 + Echvi_0755 0.89 -0.6
850,050 + Echvi_0755 0.89 -1.0
850,051 - Echvi_0755 0.89 -0.1
850,051 - Echvi_0755 0.89 -0.3
850,051 - Echvi_0755 0.89 -1.3
850,051 - Echvi_0755 0.89 -2.0
850,163 - -0.5
850,168 - -0.7
850,168 - -0.2
850,180 + +0.1
850,180 + +1.2
850,181 - -1.5
850,241 + -0.1
850,266 - +0.2
850,267 + +0.1
850,267 + -0.0
850,268 - -1.0
850,268 - -0.3
850,268 - +0.2
850,268 - -0.6
850,313 - +0.4
850,314 + -0.5
850,320 + +0.1
850,321 - -1.0
850,334 + +1.9
850,334 + +0.6
850,334 + -0.7
850,337 + +0.3
850,337 + +0.4
850,462 + Echvi_0756 0.30 +0.7
850,468 - Echvi_0756 0.31 -2.0
850,471 - Echvi_0756 0.32 +0.5
850,558 + Echvi_0756 0.50 +0.6
850,558 + Echvi_0756 0.50 +0.2
850,558 + Echvi_0756 0.50 -1.7
850,559 - Echvi_0756 0.51 -0.4
850,757 + -1.2
850,795 - +1.4
850,816 - Echvi_0757 0.19 +0.3
850,833 - Echvi_0757 0.28 -0.7
850,837 - Echvi_0757 0.29 +1.0
850,841 - Echvi_0757 0.31 -0.6
851,106 + Echvi_0758 0.18 -0.4
851,106 + Echvi_0758 0.18 +0.8
851,118 + Echvi_0758 0.19 -0.2
851,157 + Echvi_0758 0.24 +1.8
851,167 - Echvi_0758 0.25 +0.4
851,208 + Echvi_0758 0.30 -0.4
851,253 - Echvi_0758 0.36 -1.9
851,295 + Echvi_0758 0.41 +1.2
851,296 - Echvi_0758 0.41 -1.1
851,296 - Echvi_0758 0.41 -1.2
851,348 + Echvi_0758 0.48 -0.4
851,349 - Echvi_0758 0.48 -0.2
851,349 - Echvi_0758 0.48 +2.2
851,349 - Echvi_0758 0.48 +0.3
851,349 - Echvi_0758 0.48 -1.9
851,349 - Echvi_0758 0.48 -1.2
851,349 - Echvi_0758 0.48 +0.4
851,349 - Echvi_0758 0.48 -1.0
851,355 + Echvi_0758 0.49 -0.7
851,356 - Echvi_0758 0.49 -1.3
851,505 + Echvi_0758 0.67 -0.7
851,505 + Echvi_0758 0.67 -0.2
851,506 - Echvi_0758 0.67 +1.2
851,506 - Echvi_0758 0.67 +0.6
851,506 - Echvi_0758 0.67 +0.4
851,506 - Echvi_0758 0.67 -0.7
851,585 + Echvi_0758 0.77 -0.1
851,586 - Echvi_0758 0.77 +1.4
851,586 - Echvi_0758 0.77 +0.1
851,586 - Echvi_0758 0.77 +2.0
851,596 - Echvi_0758 0.78 +1.4
851,617 + Echvi_0758 0.81 +0.1
851,618 - Echvi_0758 0.81 -0.4
851,632 + Echvi_0758 0.83 +0.4
851,642 - Echvi_0758 0.84 +0.1
851,662 + Echvi_0758 0.87 +1.5
851,717 - -1.0
851,785 + -0.4
851,785 + +1.1
851,785 + -1.1
851,785 + -0.7
851,786 - +0.1
851,786 - +0.1
851,786 - -0.1
851,786 - -0.6
851,786 - +0.0
851,786 - +1.1
851,786 - +0.2
851,786 - +0.3
851,787 + +0.1
851,832 + -0.1
851,865 - Echvi_0759 0.12 +1.4
851,874 - Echvi_0759 0.13 +0.6
851,875 + Echvi_0759 0.13 -0.4
851,875 + Echvi_0759 0.13 -1.2
851,876 - Echvi_0759 0.13 -0.3
851,883 + Echvi_0759 0.14 +0.4
851,884 - Echvi_0759 0.14 -0.2
851,968 + Echvi_0759 0.24 +2.5
851,968 + Echvi_0759 0.24 +1.0
851,968 + Echvi_0759 0.24 -0.9
851,968 + Echvi_0759 0.24 +0.2
851,971 + Echvi_0759 0.24 -0.5
851,971 + Echvi_0759 0.24 +2.4
851,972 - Echvi_0759 0.24 -1.4
851,986 + Echvi_0759 0.26 +1.1
852,032 + Echvi_0759 0.32 -0.9
852,033 - Echvi_0759 0.32 -2.4
852,034 + Echvi_0759 0.32 +0.8
852,035 - Echvi_0759 0.32 +1.6
852,035 - Echvi_0759 0.32 -2.6
852,086 + Echvi_0759 0.38 -0.6
852,087 - Echvi_0759 0.38 -0.1
852,173 - Echvi_0759 0.48 -1.0
852,176 + Echvi_0759 0.49 -2.2
852,177 - Echvi_0759 0.49 +0.7
852,244 + Echvi_0759 0.57 +0.6
852,244 + Echvi_0759 0.57 +0.8
852,245 - Echvi_0759 0.57 +0.7
852,360 + Echvi_0759 0.70 +0.0
852,424 + Echvi_0759 0.78 +1.1
852,425 - Echvi_0759 0.78 -0.0
852,425 - Echvi_0759 0.78 +0.7
852,428 - Echvi_0759 0.79 +0.7
852,508 + Echvi_0759 0.88 +1.0
852,516 - Echvi_0759 0.89 +0.0
852,604 - -0.2
852,610 + +1.6
852,611 - -0.1
852,618 - +1.0
852,629 - Echvi_0760 0.10 +0.6
852,629 - Echvi_0760 0.10 +0.7
852,659 - Echvi_0760 0.23 -0.1
852,754 - Echvi_0760 0.64 -0.2
852,754 - Echvi_0760 0.64 -0.4
852,757 + Echvi_0760 0.65 -0.2
852,757 + Echvi_0760 0.65 +1.5
852,757 + Echvi_0760 0.65 +0.3
852,757 + Echvi_0760 0.65 -1.6
852,757 + Echvi_0760 0.65 -1.4
852,757 + Echvi_0760 0.65 -1.3
852,757 + Echvi_0760 0.65 -0.3
852,758 - Echvi_0760 0.65 -0.7
852,758 - Echvi_0760 0.65 +0.5
852,758 - Echvi_0760 0.65 -0.8
852,758 - Echvi_0760 0.65 +0.8
852,759 + Echvi_0760 0.66 -2.0

Or see this region's nucleotide sequence