Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0692

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0691 and Echvi_0692 are separated by 228 nucleotidesEchvi_0692 and Echvi_0693 are separated by 288 nucleotides Echvi_0691: Echvi_0691 - Dipeptidyl aminopeptidases/acylaminoacyl-peptidases, at 779,393 to 781,570 _0691 Echvi_0692: Echvi_0692 - hypothetical protein, at 781,799 to 782,032 _0692 Echvi_0693: Echvi_0693 - D-alanine--D-alanine ligase, at 782,321 to 783,310 _0693 Position (kb) 781 782 783Strain fitness (log2 ratio) -2 -1 0 1 2at 780.807 kb on + strand, within Echvi_0691at 780.857 kb on - strand, within Echvi_0691at 780.862 kb on + strand, within Echvi_0691at 780.864 kb on + strand, within Echvi_0691at 780.864 kb on + strand, within Echvi_0691at 780.865 kb on - strand, within Echvi_0691at 780.877 kb on - strand, within Echvi_0691at 780.901 kb on + strand, within Echvi_0691at 780.901 kb on + strand, within Echvi_0691at 780.902 kb on - strand, within Echvi_0691at 780.902 kb on - strand, within Echvi_0691at 780.937 kb on - strand, within Echvi_0691at 780.999 kb on + strand, within Echvi_0691at 780.999 kb on + strand, within Echvi_0691at 781.000 kb on - strand, within Echvi_0691at 781.000 kb on - strand, within Echvi_0691at 781.000 kb on - strand, within Echvi_0691at 781.001 kb on + strand, within Echvi_0691at 781.002 kb on - strand, within Echvi_0691at 781.002 kb on - strand, within Echvi_0691at 781.025 kb on - strand, within Echvi_0691at 781.062 kb on - strand, within Echvi_0691at 781.085 kb on - strand, within Echvi_0691at 781.086 kb on + strand, within Echvi_0691at 781.086 kb on + strand, within Echvi_0691at 781.087 kb on - strand, within Echvi_0691at 781.087 kb on - strand, within Echvi_0691at 781.087 kb on - strand, within Echvi_0691at 781.087 kb on - strand, within Echvi_0691at 781.087 kb on - strand, within Echvi_0691at 781.089 kb on + strand, within Echvi_0691at 781.089 kb on + strand, within Echvi_0691at 781.089 kb on + strand, within Echvi_0691at 781.090 kb on - strand, within Echvi_0691at 781.090 kb on - strand, within Echvi_0691at 781.090 kb on - strand, within Echvi_0691at 781.090 kb on - strand, within Echvi_0691at 781.091 kb on + strand, within Echvi_0691at 781.091 kb on + strand, within Echvi_0691at 781.091 kb on + strand, within Echvi_0691at 781.091 kb on + strand, within Echvi_0691at 781.092 kb on - strand, within Echvi_0691at 781.092 kb on - strand, within Echvi_0691at 781.092 kb on - strand, within Echvi_0691at 781.092 kb on - strand, within Echvi_0691at 781.123 kb on + strand, within Echvi_0691at 781.123 kb on + strand, within Echvi_0691at 781.126 kb on + strand, within Echvi_0691at 781.146 kb on + strand, within Echvi_0691at 781.147 kb on - strand, within Echvi_0691at 781.147 kb on - strand, within Echvi_0691at 781.147 kb on - strand, within Echvi_0691at 781.147 kb on - strand, within Echvi_0691at 781.147 kb on - strand, within Echvi_0691at 781.147 kb on - strand, within Echvi_0691at 781.206 kb on + strand, within Echvi_0691at 781.231 kb on + strand, within Echvi_0691at 781.231 kb on + strand, within Echvi_0691at 781.231 kb on + strand, within Echvi_0691at 781.231 kb on + strand, within Echvi_0691at 781.232 kb on - strand, within Echvi_0691at 781.233 kb on + strand, within Echvi_0691at 781.234 kb on - strand, within Echvi_0691at 781.234 kb on - strand, within Echvi_0691at 781.234 kb on - strand, within Echvi_0691at 781.407 kb on + strandat 781.408 kb on - strandat 781.408 kb on - strandat 781.411 kb on - strandat 781.411 kb on - strandat 781.484 kb on + strandat 781.484 kb on + strandat 781.484 kb on + strandat 781.485 kb on - strandat 781.485 kb on - strandat 781.509 kb on + strandat 781.510 kb on - strandat 781.525 kb on + strandat 781.525 kb on + strandat 781.526 kb on - strandat 781.526 kb on - strandat 781.574 kb on + strandat 781.574 kb on + strandat 781.575 kb on - strandat 781.578 kb on + strandat 781.579 kb on - strandat 781.579 kb on - strandat 781.580 kb on + strandat 781.580 kb on + strandat 781.581 kb on - strandat 781.581 kb on - strandat 781.581 kb on - strandat 781.608 kb on + strandat 781.608 kb on + strandat 781.608 kb on + strandat 781.657 kb on - strandat 781.710 kb on + strandat 781.779 kb on + strandat 781.792 kb on + strandat 781.846 kb on - strand, within Echvi_0692at 781.960 kb on + strand, within Echvi_0692at 781.966 kb on - strand, within Echvi_0692at 781.987 kb on + strand, within Echvi_0692at 782.005 kb on - strand, within Echvi_0692at 782.023 kb on - strandat 782.048 kb on - strandat 782.055 kb on - strandat 782.055 kb on - strandat 782.057 kb on + strandat 782.128 kb on + strandat 782.129 kb on - strandat 782.129 kb on - strandat 782.135 kb on - strandat 782.177 kb on + strandat 782.177 kb on + strandat 782.177 kb on + strandat 782.178 kb on - strandat 782.262 kb on - strandat 782.309 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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780,807 + Echvi_0691 0.65 +0.2
780,857 - Echvi_0691 0.67 +0.0
780,862 + Echvi_0691 0.67 +0.9
780,864 + Echvi_0691 0.68 -0.5
780,864 + Echvi_0691 0.68 +0.8
780,865 - Echvi_0691 0.68 -0.2
780,877 - Echvi_0691 0.68 -0.9
780,901 + Echvi_0691 0.69 -0.6
780,901 + Echvi_0691 0.69 -0.6
780,902 - Echvi_0691 0.69 +0.3
780,902 - Echvi_0691 0.69 +0.4
780,937 - Echvi_0691 0.71 +0.1
780,999 + Echvi_0691 0.74 +0.8
780,999 + Echvi_0691 0.74 +0.2
781,000 - Echvi_0691 0.74 -0.8
781,000 - Echvi_0691 0.74 -0.3
781,000 - Echvi_0691 0.74 -0.0
781,001 + Echvi_0691 0.74 +1.4
781,002 - Echvi_0691 0.74 +0.3
781,002 - Echvi_0691 0.74 -0.6
781,025 - Echvi_0691 0.75 -0.1
781,062 - Echvi_0691 0.77 +0.4
781,085 - Echvi_0691 0.78 +0.3
781,086 + Echvi_0691 0.78 -1.4
781,086 + Echvi_0691 0.78 +0.4
781,087 - Echvi_0691 0.78 -1.8
781,087 - Echvi_0691 0.78 -0.3
781,087 - Echvi_0691 0.78 +0.6
781,087 - Echvi_0691 0.78 -0.1
781,087 - Echvi_0691 0.78 +1.8
781,089 + Echvi_0691 0.78 -0.2
781,089 + Echvi_0691 0.78 +0.1
781,089 + Echvi_0691 0.78 -0.7
781,090 - Echvi_0691 0.78 +0.5
781,090 - Echvi_0691 0.78 +0.0
781,090 - Echvi_0691 0.78 +0.1
781,090 - Echvi_0691 0.78 -0.2
781,091 + Echvi_0691 0.78 -0.3
781,091 + Echvi_0691 0.78 -0.5
781,091 + Echvi_0691 0.78 +0.1
781,091 + Echvi_0691 0.78 +0.1
781,092 - Echvi_0691 0.78 -0.7
781,092 - Echvi_0691 0.78 +0.6
781,092 - Echvi_0691 0.78 +0.8
781,092 - Echvi_0691 0.78 +0.3
781,123 + Echvi_0691 0.79 +0.2
781,123 + Echvi_0691 0.79 -1.0
781,126 + Echvi_0691 0.80 -0.6
781,146 + Echvi_0691 0.80 -0.8
781,147 - Echvi_0691 0.81 +2.6
781,147 - Echvi_0691 0.81 +0.8
781,147 - Echvi_0691 0.81 -0.9
781,147 - Echvi_0691 0.81 -0.5
781,147 - Echvi_0691 0.81 +1.2
781,147 - Echvi_0691 0.81 -1.4
781,206 + Echvi_0691 0.83 +1.0
781,231 + Echvi_0691 0.84 -0.4
781,231 + Echvi_0691 0.84 -0.5
781,231 + Echvi_0691 0.84 +0.5
781,231 + Echvi_0691 0.84 +0.4
781,232 - Echvi_0691 0.84 -0.1
781,233 + Echvi_0691 0.84 -1.4
781,234 - Echvi_0691 0.85 +1.3
781,234 - Echvi_0691 0.85 +0.7
781,234 - Echvi_0691 0.85 -0.5
781,407 + +1.8
781,408 - -0.4
781,408 - -1.5
781,411 - -0.8
781,411 - -0.1
781,484 + +0.0
781,484 + -0.2
781,484 + +0.3
781,485 - +0.4
781,485 - +0.7
781,509 + +0.2
781,510 - +0.2
781,525 + -0.5
781,525 + +2.0
781,526 - +0.8
781,526 - +0.2
781,574 + +0.2
781,574 + -0.6
781,575 - -1.3
781,578 + -0.1
781,579 - -0.1
781,579 - -1.2
781,580 + +0.4
781,580 + -1.4
781,581 - -0.2
781,581 - +0.0
781,581 - +0.7
781,608 + +0.3
781,608 + +0.2
781,608 + -0.6
781,657 - -0.5
781,710 + +1.2
781,779 + -0.4
781,792 + -0.9
781,846 - Echvi_0692 0.20 -1.6
781,960 + Echvi_0692 0.69 -1.6
781,966 - Echvi_0692 0.71 -1.6
781,987 + Echvi_0692 0.80 -0.8
782,005 - Echvi_0692 0.88 -0.1
782,023 - +1.3
782,048 - +1.1
782,055 - -0.3
782,055 - -0.2
782,057 + -0.7
782,128 + +0.0
782,129 - +1.9
782,129 - +0.9
782,135 - -0.2
782,177 + +1.3
782,177 + +0.1
782,177 + -1.2
782,178 - +2.1
782,262 - +1.7
782,309 + +0.6

Or see this region's nucleotide sequence