Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0224

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0222 and Echvi_0223 overlap by 20 nucleotidesEchvi_0223 and Echvi_0224 are separated by 261 nucleotidesEchvi_0224 and Echvi_0225 are separated by 144 nucleotides Echvi_0222: Echvi_0222 - hypothetical protein, at 240,542 to 241,114 _0222 Echvi_0223: Echvi_0223 - Septum formation initiator., at 241,095 to 241,382 _0223 Echvi_0224: Echvi_0224 - hypothetical protein, at 241,644 to 242,017 _0224 Echvi_0225: Echvi_0225 - phosphopyruvate hydratase, at 242,162 to 243,439 _0225 Position (kb) 241 242 243Strain fitness (log2 ratio) -1 0 1at 240.664 kb on - strand, within Echvi_0222at 240.734 kb on - strand, within Echvi_0222at 240.734 kb on - strand, within Echvi_0222at 240.734 kb on - strand, within Echvi_0222at 240.734 kb on - strand, within Echvi_0222at 240.735 kb on + strand, within Echvi_0222at 240.736 kb on - strand, within Echvi_0222at 240.736 kb on - strand, within Echvi_0222at 240.736 kb on - strand, within Echvi_0222at 240.744 kb on - strand, within Echvi_0222at 240.760 kb on - strand, within Echvi_0222at 240.794 kb on - strand, within Echvi_0222at 240.795 kb on + strand, within Echvi_0222at 240.796 kb on - strand, within Echvi_0222at 240.820 kb on - strand, within Echvi_0222at 240.820 kb on - strand, within Echvi_0222at 240.848 kb on - strand, within Echvi_0222at 240.864 kb on + strand, within Echvi_0222at 240.865 kb on - strand, within Echvi_0222at 240.933 kb on + strand, within Echvi_0222at 240.933 kb on + strand, within Echvi_0222at 240.934 kb on - strand, within Echvi_0222at 241.044 kb on - strand, within Echvi_0222at 241.398 kb on - strandat 241.402 kb on - strandat 241.411 kb on - strandat 241.419 kb on + strandat 241.448 kb on + strandat 241.448 kb on + strandat 241.449 kb on - strandat 241.454 kb on - strandat 241.460 kb on + strandat 241.487 kb on + strandat 241.496 kb on + strandat 241.496 kb on + strandat 241.501 kb on - strandat 241.503 kb on + strandat 241.560 kb on + strandat 241.561 kb on - strandat 241.650 kb on + strandat 241.651 kb on - strandat 241.651 kb on - strandat 241.691 kb on + strand, within Echvi_0224at 241.692 kb on - strand, within Echvi_0224at 241.764 kb on - strand, within Echvi_0224at 241.768 kb on - strand, within Echvi_0224at 241.782 kb on - strand, within Echvi_0224at 241.890 kb on + strand, within Echvi_0224at 241.891 kb on - strand, within Echvi_0224at 241.962 kb on + strand, within Echvi_0224at 241.963 kb on - strand, within Echvi_0224at 241.996 kb on - strandat 242.142 kb on + strandat 242.145 kb on + strandat 242.163 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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240,664 - Echvi_0222 0.21 -0.1
240,734 - Echvi_0222 0.34 +0.4
240,734 - Echvi_0222 0.34 +0.6
240,734 - Echvi_0222 0.34 +0.6
240,734 - Echvi_0222 0.34 +0.0
240,735 + Echvi_0222 0.34 +0.0
240,736 - Echvi_0222 0.34 -1.5
240,736 - Echvi_0222 0.34 +1.1
240,736 - Echvi_0222 0.34 -0.7
240,744 - Echvi_0222 0.35 -0.7
240,760 - Echvi_0222 0.38 -0.8
240,794 - Echvi_0222 0.44 +1.3
240,795 + Echvi_0222 0.44 +0.5
240,796 - Echvi_0222 0.44 +1.6
240,820 - Echvi_0222 0.49 +0.7
240,820 - Echvi_0222 0.49 +1.2
240,848 - Echvi_0222 0.53 -1.1
240,864 + Echvi_0222 0.56 -0.6
240,865 - Echvi_0222 0.56 -0.1
240,933 + Echvi_0222 0.68 -0.6
240,933 + Echvi_0222 0.68 -0.8
240,934 - Echvi_0222 0.68 +0.3
241,044 - Echvi_0222 0.88 -1.1
241,398 - +1.1
241,402 - -0.1
241,411 - -0.5
241,419 + -0.2
241,448 + +1.0
241,448 + +0.8
241,449 - +0.4
241,454 - +0.0
241,460 + +0.4
241,487 + -1.6
241,496 + +0.2
241,496 + +0.5
241,501 - -0.1
241,503 + +0.7
241,560 + -0.9
241,561 - +0.9
241,650 + -0.7
241,651 - +0.9
241,651 - +1.6
241,691 + Echvi_0224 0.13 +1.6
241,692 - Echvi_0224 0.13 -1.0
241,764 - Echvi_0224 0.32 +1.0
241,768 - Echvi_0224 0.33 -0.6
241,782 - Echvi_0224 0.37 -0.2
241,890 + Echvi_0224 0.66 +1.2
241,891 - Echvi_0224 0.66 +0.6
241,962 + Echvi_0224 0.85 +0.1
241,963 - Echvi_0224 0.85 +0.4
241,996 - -1.4
242,142 + +0.1
242,145 + +0.0
242,163 + -0.3

Or see this region's nucleotide sequence