Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4440 and EX28DRAFT_4441 overlap by 4 nucleotides EX28DRAFT_4441 and EX28DRAFT_4442 are separated by 18 nucleotides
EX28DRAFT_4440: EX28DRAFT_4440 - acetolactate synthase, large subunit (EC 2.2.1.6), at 3,911 to 5,557
_4440
EX28DRAFT_4441: EX28DRAFT_4441 - acetolactate synthase, small subunit (EC 2.2.1.6), at 5,554 to 5,817
_4441
EX28DRAFT_4442: EX28DRAFT_4442 - branched-chain amino acid aminotransferase, group I, at 5,836 to 6,765
_4442
Position (kb) 5
6 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4.640 kb on + strand, within EX28DRAFT_4440 at 4.641 kb on - strand, within EX28DRAFT_4440 at 4.641 kb on - strand, within EX28DRAFT_4440 at 4.641 kb on - strand, within EX28DRAFT_4440 at 4.786 kb on + strand, within EX28DRAFT_4440 at 4.787 kb on - strand, within EX28DRAFT_4440 at 4.787 kb on - strand, within EX28DRAFT_4440 at 4.967 kb on + strand, within EX28DRAFT_4440 at 4.968 kb on - strand, within EX28DRAFT_4440 at 5.002 kb on + strand, within EX28DRAFT_4440 at 5.003 kb on - strand, within EX28DRAFT_4440 at 5.003 kb on - strand, within EX28DRAFT_4440 at 5.035 kb on - strand, within EX28DRAFT_4440 at 5.072 kb on + strand, within EX28DRAFT_4440 at 5.073 kb on - strand, within EX28DRAFT_4440 at 5.183 kb on - strand, within EX28DRAFT_4440 at 5.550 kb on + strand at 5.550 kb on + strand at 5.652 kb on + strand, within EX28DRAFT_4441 at 5.653 kb on - strand, within EX28DRAFT_4441 at 5.700 kb on - strand, within EX28DRAFT_4441 at 5.730 kb on - strand, within EX28DRAFT_4441 at 5.736 kb on + strand, within EX28DRAFT_4441 at 5.757 kb on - strand, within EX28DRAFT_4441 at 5.857 kb on + strand at 5.858 kb on - strand at 5.929 kb on + strand, within EX28DRAFT_4442 at 5.929 kb on + strand, within EX28DRAFT_4442 at 5.930 kb on - strand, within EX28DRAFT_4442 at 5.935 kb on - strand, within EX28DRAFT_4442 at 5.942 kb on + strand, within EX28DRAFT_4442 at 5.943 kb on - strand, within EX28DRAFT_4442 at 5.943 kb on - strand, within EX28DRAFT_4442 at 5.962 kb on + strand, within EX28DRAFT_4442 at 5.963 kb on - strand, within EX28DRAFT_4442 at 6.182 kb on - strand, within EX28DRAFT_4442 at 6.184 kb on - strand, within EX28DRAFT_4442 at 6.329 kb on - strand, within EX28DRAFT_4442 at 6.407 kb on - strand, within EX28DRAFT_4442 at 6.407 kb on - strand, within EX28DRAFT_4442 at 6.407 kb on - strand, within EX28DRAFT_4442 at 6.453 kb on + strand, within EX28DRAFT_4442 at 6.546 kb on - strand, within EX28DRAFT_4442 at 6.546 kb on - strand, within EX28DRAFT_4442 at 6.577 kb on + strand, within EX28DRAFT_4442 at 6.688 kb on - strand at 6.732 kb on + strand at 6.733 kb on - strand at 6.737 kb on - strand at 6.756 kb on + strand at 6.764 kb on - strand at 6.769 kb on + strand at 6.770 kb on - strand at 6.797 kb on + strand at 6.798 kb on - strand at 6.801 kb on + strand at 6.802 kb on - strand at 6.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 4,640 + EX28DRAFT_4440 0.44 +0.6 4,641 - EX28DRAFT_4440 0.44 +1.1 4,641 - EX28DRAFT_4440 0.44 +0.4 4,641 - EX28DRAFT_4440 0.44 -0.9 4,786 + EX28DRAFT_4440 0.53 +1.1 4,787 - EX28DRAFT_4440 0.53 +0.4 4,787 - EX28DRAFT_4440 0.53 -0.5 4,967 + EX28DRAFT_4440 0.64 +0.8 4,968 - EX28DRAFT_4440 0.64 +1.0 5,002 + EX28DRAFT_4440 0.66 +0.8 5,003 - EX28DRAFT_4440 0.66 +0.5 5,003 - EX28DRAFT_4440 0.66 +0.7 5,035 - EX28DRAFT_4440 0.68 +1.1 5,072 + EX28DRAFT_4440 0.70 +0.4 5,073 - EX28DRAFT_4440 0.71 +0.4 5,183 - EX28DRAFT_4440 0.77 +0.3 5,550 + -0.4 5,550 + +0.8 5,652 + EX28DRAFT_4441 0.37 +0.5 5,653 - EX28DRAFT_4441 0.38 +2.5 5,700 - EX28DRAFT_4441 0.55 +2.8 5,730 - EX28DRAFT_4441 0.67 -0.3 5,736 + EX28DRAFT_4441 0.69 +0.1 5,757 - EX28DRAFT_4441 0.77 +0.5 5,857 + +0.4 5,858 - -1.7 5,929 + EX28DRAFT_4442 0.10 +1.7 5,929 + EX28DRAFT_4442 0.10 +0.9 5,930 - EX28DRAFT_4442 0.10 +0.9 5,935 - EX28DRAFT_4442 0.11 -0.1 5,942 + EX28DRAFT_4442 0.11 +1.1 5,943 - EX28DRAFT_4442 0.12 -2.7 5,943 - EX28DRAFT_4442 0.12 -0.4 5,962 + EX28DRAFT_4442 0.14 +0.6 5,963 - EX28DRAFT_4442 0.14 +0.4 6,182 - EX28DRAFT_4442 0.37 +0.7 6,184 - EX28DRAFT_4442 0.37 +1.5 6,329 - EX28DRAFT_4442 0.53 -2.3 6,407 - EX28DRAFT_4442 0.61 +1.7 6,407 - EX28DRAFT_4442 0.61 +0.7 6,407 - EX28DRAFT_4442 0.61 +0.2 6,453 + EX28DRAFT_4442 0.66 -0.3 6,546 - EX28DRAFT_4442 0.76 +0.9 6,546 - EX28DRAFT_4442 0.76 +0.6 6,577 + EX28DRAFT_4442 0.80 +0.7 6,688 - +1.3 6,732 + -0.1 6,733 - +1.3 6,737 - -0.0 6,756 + -0.2 6,764 - +0.9 6,769 + +0.4 6,770 - -0.7 6,797 + +0.5 6,798 - -0.0 6,801 + -0.0 6,802 - +1.8 6,802 - +1.5
Or see this region's nucleotide sequence