Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4428

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4426 and EX28DRAFT_4427 are separated by 9 nucleotidesEX28DRAFT_4427 and EX28DRAFT_4428 are separated by 79 nucleotidesEX28DRAFT_4428 and EX28DRAFT_4429 are separated by 346 nucleotides EX28DRAFT_4426: EX28DRAFT_4426 - transcriptional regulator, TetR family, at 93,778 to 94,416 _4426 EX28DRAFT_4427: EX28DRAFT_4427 - Protein of unknown function (DUF1422), at 94,426 to 94,785 _4427 EX28DRAFT_4428: EX28DRAFT_4428 - tRNA (uracil(54)-C(5))-methyltransferase, at 94,865 to 95,977 _4428 EX28DRAFT_4429: EX28DRAFT_4429 - TonB-dependent vitamin B12 receptor, at 96,324 to 98,171 _4429 Position (kb) 94 95 96Strain fitness (log2 ratio) -2 -1 0 1 2at 94.193 kb on - strand, within EX28DRAFT_4426at 94.366 kb on + strandat 94.495 kb on - strand, within EX28DRAFT_4427at 94.567 kb on + strand, within EX28DRAFT_4427at 94.655 kb on + strand, within EX28DRAFT_4427at 94.655 kb on + strand, within EX28DRAFT_4427at 94.655 kb on + strand, within EX28DRAFT_4427at 94.656 kb on - strand, within EX28DRAFT_4427at 94.656 kb on - strand, within EX28DRAFT_4427at 94.656 kb on - strand, within EX28DRAFT_4427at 94.656 kb on - strand, within EX28DRAFT_4427at 94.656 kb on - strand, within EX28DRAFT_4427at 94.656 kb on - strand, within EX28DRAFT_4427at 94.656 kb on - strand, within EX28DRAFT_4427at 94.656 kb on - strand, within EX28DRAFT_4427at 94.656 kb on - strand, within EX28DRAFT_4427at 94.657 kb on + strand, within EX28DRAFT_4427at 94.657 kb on + strand, within EX28DRAFT_4427at 94.657 kb on + strand, within EX28DRAFT_4427at 94.657 kb on + strand, within EX28DRAFT_4427at 94.658 kb on - strand, within EX28DRAFT_4427at 94.658 kb on - strand, within EX28DRAFT_4427at 94.659 kb on + strand, within EX28DRAFT_4427at 94.659 kb on + strand, within EX28DRAFT_4427at 94.659 kb on + strand, within EX28DRAFT_4427at 94.659 kb on + strand, within EX28DRAFT_4427at 94.659 kb on + strand, within EX28DRAFT_4427at 94.659 kb on + strand, within EX28DRAFT_4427at 94.660 kb on - strand, within EX28DRAFT_4427at 94.699 kb on - strand, within EX28DRAFT_4427at 94.776 kb on - strandat 94.806 kb on + strandat 94.807 kb on - strandat 94.859 kb on + strandat 94.898 kb on - strandat 95.094 kb on + strand, within EX28DRAFT_4428at 95.217 kb on + strand, within EX28DRAFT_4428at 95.218 kb on - strand, within EX28DRAFT_4428at 95.275 kb on + strand, within EX28DRAFT_4428at 95.424 kb on + strand, within EX28DRAFT_4428at 95.620 kb on + strand, within EX28DRAFT_4428at 95.620 kb on + strand, within EX28DRAFT_4428at 95.621 kb on - strand, within EX28DRAFT_4428at 95.621 kb on - strand, within EX28DRAFT_4428at 95.621 kb on - strand, within EX28DRAFT_4428at 95.621 kb on - strand, within EX28DRAFT_4428at 95.905 kb on + strandat 95.905 kb on + strandat 95.947 kb on - strandat 95.947 kb on - strandat 95.994 kb on + strandat 96.002 kb on + strandat 96.015 kb on + strandat 96.053 kb on + strandat 96.053 kb on + strandat 96.053 kb on + strandat 96.054 kb on - strandat 96.071 kb on + strandat 96.071 kb on + strandat 96.071 kb on + strandat 96.072 kb on - strandat 96.072 kb on - strandat 96.072 kb on - strandat 96.080 kb on - strandat 96.080 kb on - strandat 96.086 kb on - strandat 96.086 kb on - strandat 96.086 kb on - strandat 96.132 kb on - strandat 96.181 kb on - strandat 96.181 kb on - strandat 96.212 kb on + strandat 96.212 kb on + strandat 96.212 kb on + strandat 96.212 kb on + strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.213 kb on - strandat 96.214 kb on + strandat 96.214 kb on + strandat 96.214 kb on + strandat 96.214 kb on + strandat 96.215 kb on - strandat 96.215 kb on - strandat 96.216 kb on + strandat 96.217 kb on - strandat 96.217 kb on - strandat 96.224 kb on + strandat 96.276 kb on + strandat 96.303 kb on + strandat 96.303 kb on + strandat 96.303 kb on + strandat 96.303 kb on + strandat 96.304 kb on - strandat 96.304 kb on - strandat 96.304 kb on - strandat 96.304 kb on - strandat 96.304 kb on - strandat 96.305 kb on + strandat 96.305 kb on + strandat 96.306 kb on - strandat 96.306 kb on - strandat 96.515 kb on + strand, within EX28DRAFT_4429at 96.516 kb on - strand, within EX28DRAFT_4429at 96.582 kb on - strand, within EX28DRAFT_4429at 96.583 kb on + strand, within EX28DRAFT_4429at 96.583 kb on + strand, within EX28DRAFT_4429at 96.583 kb on + strand, within EX28DRAFT_4429at 96.584 kb on - strand, within EX28DRAFT_4429at 96.731 kb on - strand, within EX28DRAFT_4429at 96.732 kb on + strand, within EX28DRAFT_4429at 96.768 kb on - strand, within EX28DRAFT_4429at 96.768 kb on - strand, within EX28DRAFT_4429at 96.770 kb on + strand, within EX28DRAFT_4429at 96.835 kb on - strand, within EX28DRAFT_4429at 96.894 kb on + strand, within EX28DRAFT_4429at 96.894 kb on + strand, within EX28DRAFT_4429at 96.895 kb on - strand, within EX28DRAFT_4429

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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94,193 - EX28DRAFT_4426 0.65 +0.1
94,366 + -0.6
94,495 - EX28DRAFT_4427 0.19 +0.6
94,567 + EX28DRAFT_4427 0.39 +0.7
94,655 + EX28DRAFT_4427 0.64 -0.2
94,655 + EX28DRAFT_4427 0.64 +0.2
94,655 + EX28DRAFT_4427 0.64 +0.5
94,656 - EX28DRAFT_4427 0.64 +0.7
94,656 - EX28DRAFT_4427 0.64 +0.6
94,656 - EX28DRAFT_4427 0.64 +0.5
94,656 - EX28DRAFT_4427 0.64 +0.5
94,656 - EX28DRAFT_4427 0.64 +0.7
94,656 - EX28DRAFT_4427 0.64 +0.2
94,656 - EX28DRAFT_4427 0.64 -0.8
94,656 - EX28DRAFT_4427 0.64 +0.1
94,656 - EX28DRAFT_4427 0.64 +0.6
94,657 + EX28DRAFT_4427 0.64 +0.1
94,657 + EX28DRAFT_4427 0.64 +0.2
94,657 + EX28DRAFT_4427 0.64 +0.3
94,657 + EX28DRAFT_4427 0.64 +0.1
94,658 - EX28DRAFT_4427 0.64 -0.1
94,658 - EX28DRAFT_4427 0.64 +1.0
94,659 + EX28DRAFT_4427 0.65 +0.3
94,659 + EX28DRAFT_4427 0.65 +0.6
94,659 + EX28DRAFT_4427 0.65 +0.4
94,659 + EX28DRAFT_4427 0.65 +0.1
94,659 + EX28DRAFT_4427 0.65 +0.1
94,659 + EX28DRAFT_4427 0.65 +0.6
94,660 - EX28DRAFT_4427 0.65 +0.4
94,699 - EX28DRAFT_4427 0.76 +0.1
94,776 - +0.4
94,806 + +0.3
94,807 - +0.5
94,859 + +0.6
94,898 - -0.8
95,094 + EX28DRAFT_4428 0.21 -0.7
95,217 + EX28DRAFT_4428 0.32 -1.0
95,218 - EX28DRAFT_4428 0.32 -0.8
95,275 + EX28DRAFT_4428 0.37 +0.0
95,424 + EX28DRAFT_4428 0.50 -0.3
95,620 + EX28DRAFT_4428 0.68 -0.5
95,620 + EX28DRAFT_4428 0.68 +0.4
95,621 - EX28DRAFT_4428 0.68 +0.1
95,621 - EX28DRAFT_4428 0.68 -0.1
95,621 - EX28DRAFT_4428 0.68 -0.4
95,621 - EX28DRAFT_4428 0.68 -0.3
95,905 + +0.0
95,905 + -1.0
95,947 - -0.1
95,947 - -0.5
95,994 + -1.2
96,002 + -0.0
96,015 + -0.2
96,053 + +0.6
96,053 + -0.3
96,053 + -0.4
96,054 - +0.3
96,071 + +0.9
96,071 + +0.3
96,071 + -0.1
96,072 - -0.2
96,072 - +0.7
96,072 - +0.4
96,080 - -1.0
96,080 - -1.0
96,086 - +0.2
96,086 - +2.2
96,086 - -0.1
96,132 - +0.2
96,181 - -0.1
96,181 - +0.4
96,212 + +0.5
96,212 + +0.6
96,212 + -0.1
96,212 + +1.2
96,213 - +0.2
96,213 - -1.0
96,213 - -0.6
96,213 - +0.7
96,213 - -0.2
96,213 - -0.2
96,213 - +0.2
96,213 - +0.5
96,213 - -0.2
96,214 + -0.3
96,214 + +0.5
96,214 + -0.6
96,214 + -0.4
96,215 - -0.1
96,215 - -0.9
96,216 + +0.8
96,217 - +0.2
96,217 - +0.4
96,224 + -2.2
96,276 + -0.5
96,303 + +0.5
96,303 + +1.0
96,303 + +0.2
96,303 + +0.7
96,304 - -0.1
96,304 - -0.1
96,304 - +0.1
96,304 - +0.1
96,304 - -0.7
96,305 + +0.4
96,305 + +0.7
96,306 - -1.2
96,306 - +0.3
96,515 + EX28DRAFT_4429 0.10 +0.2
96,516 - EX28DRAFT_4429 0.10 -0.1
96,582 - EX28DRAFT_4429 0.14 +0.4
96,583 + EX28DRAFT_4429 0.14 -0.9
96,583 + EX28DRAFT_4429 0.14 -0.1
96,583 + EX28DRAFT_4429 0.14 +0.0
96,584 - EX28DRAFT_4429 0.14 +0.3
96,731 - EX28DRAFT_4429 0.22 +1.3
96,732 + EX28DRAFT_4429 0.22 -0.3
96,768 - EX28DRAFT_4429 0.24 +0.3
96,768 - EX28DRAFT_4429 0.24 +1.2
96,770 + EX28DRAFT_4429 0.24 -0.1
96,835 - EX28DRAFT_4429 0.28 +0.8
96,894 + EX28DRAFT_4429 0.31 +0.6
96,894 + EX28DRAFT_4429 0.31 -0.2
96,895 - EX28DRAFT_4429 0.31 +0.2

Or see this region's nucleotide sequence