Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4406

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4404 and EX28DRAFT_4405 are separated by 9 nucleotidesEX28DRAFT_4405 and EX28DRAFT_4406 are separated by 94 nucleotidesEX28DRAFT_4406 and EX28DRAFT_4407 are separated by 198 nucleotides EX28DRAFT_4404: EX28DRAFT_4404 - ATP-dependent protease HslVU, ATPase subunit, at 66,203 to 67,537 _4404 EX28DRAFT_4405: EX28DRAFT_4405 - ATP-dependent protease HslVU, peptidase subunit, at 67,547 to 68,077 _4405 EX28DRAFT_4406: EX28DRAFT_4406 - cell division protein FtsN, at 68,172 to 69,065 _4406 EX28DRAFT_4407: EX28DRAFT_4407 - Transcriptional regulators, at 69,264 to 70,289 _4407 Position (kb) 68 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1at 67.266 kb on + strand, within EX28DRAFT_4404at 67.267 kb on - strand, within EX28DRAFT_4404at 67.267 kb on - strand, within EX28DRAFT_4404at 67.267 kb on - strand, within EX28DRAFT_4404at 67.426 kb on + strandat 67.548 kb on + strandat 67.549 kb on - strandat 67.593 kb on + strandat 67.593 kb on + strandat 67.593 kb on + strandat 67.593 kb on + strandat 67.594 kb on - strandat 68.003 kb on - strand, within EX28DRAFT_4405at 68.063 kb on + strandat 68.063 kb on + strandat 68.063 kb on + strandat 68.064 kb on - strandat 68.064 kb on - strandat 68.064 kb on - strandat 68.064 kb on - strandat 68.066 kb on + strandat 68.066 kb on + strandat 68.066 kb on + strandat 68.067 kb on - strandat 68.142 kb on - strandat 68.148 kb on + strandat 68.149 kb on - strandat 68.149 kb on - strandat 68.300 kb on + strand, within EX28DRAFT_4406at 68.300 kb on + strand, within EX28DRAFT_4406at 68.301 kb on - strand, within EX28DRAFT_4406at 68.301 kb on - strand, within EX28DRAFT_4406at 68.486 kb on + strand, within EX28DRAFT_4406at 68.600 kb on - strand, within EX28DRAFT_4406at 69.185 kb on - strandat 69.189 kb on - strandat 69.213 kb on - strandat 69.216 kb on + strandat 69.217 kb on - strandat 69.261 kb on - strandat 69.261 kb on - strandat 69.265 kb on + strandat 69.443 kb on + strand, within EX28DRAFT_4407at 69.443 kb on + strand, within EX28DRAFT_4407at 69.444 kb on - strand, within EX28DRAFT_4407at 69.507 kb on + strand, within EX28DRAFT_4407at 69.608 kb on + strand, within EX28DRAFT_4407at 69.608 kb on + strand, within EX28DRAFT_4407at 69.608 kb on + strand, within EX28DRAFT_4407at 69.628 kb on + strand, within EX28DRAFT_4407at 69.628 kb on + strand, within EX28DRAFT_4407at 69.737 kb on + strand, within EX28DRAFT_4407at 69.738 kb on - strand, within EX28DRAFT_4407at 69.738 kb on - strand, within EX28DRAFT_4407

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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67,266 + EX28DRAFT_4404 0.80 +0.8
67,267 - EX28DRAFT_4404 0.80 +0.2
67,267 - EX28DRAFT_4404 0.80 -1.0
67,267 - EX28DRAFT_4404 0.80 +0.3
67,426 + -1.6
67,548 + -1.9
67,549 - -0.3
67,593 + -0.1
67,593 + -0.3
67,593 + -0.5
67,593 + +0.7
67,594 - -0.6
68,003 - EX28DRAFT_4405 0.86 -0.7
68,063 + -0.8
68,063 + -1.1
68,063 + -1.2
68,064 - +0.0
68,064 - +0.5
68,064 - -0.4
68,064 - -1.0
68,066 + -0.1
68,066 + -2.2
68,066 + -0.8
68,067 - -1.1
68,142 - +0.3
68,148 + -0.1
68,149 - +0.1
68,149 - -0.1
68,300 + EX28DRAFT_4406 0.14 -1.0
68,300 + EX28DRAFT_4406 0.14 -2.3
68,301 - EX28DRAFT_4406 0.14 -1.4
68,301 - EX28DRAFT_4406 0.14 -3.3
68,486 + EX28DRAFT_4406 0.35 -1.1
68,600 - EX28DRAFT_4406 0.48 -1.0
69,185 - -0.4
69,189 - +0.1
69,213 - +0.0
69,216 + -2.1
69,217 - -0.1
69,261 - -0.3
69,261 - -0.8
69,265 + -0.1
69,443 + EX28DRAFT_4407 0.17 -0.7
69,443 + EX28DRAFT_4407 0.17 -0.8
69,444 - EX28DRAFT_4407 0.18 +1.0
69,507 + EX28DRAFT_4407 0.24 -1.2
69,608 + EX28DRAFT_4407 0.34 -0.5
69,608 + EX28DRAFT_4407 0.34 -0.1
69,608 + EX28DRAFT_4407 0.34 +0.7
69,628 + EX28DRAFT_4407 0.35 -0.5
69,628 + EX28DRAFT_4407 0.35 -0.8
69,737 + EX28DRAFT_4407 0.46 -0.6
69,738 - EX28DRAFT_4407 0.46 -0.5
69,738 - EX28DRAFT_4407 0.46 -1.1

Or see this region's nucleotide sequence