Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4391 and EX28DRAFT_4392 are separated by 107 nucleotides EX28DRAFT_4392 and EX28DRAFT_4393 are separated by 73 nucleotides EX28DRAFT_4393 and EX28DRAFT_4394 are separated by 48 nucleotides EX28DRAFT_4394 and EX28DRAFT_4395 are separated by 111 nucleotides
EX28DRAFT_4391: EX28DRAFT_4391 - sulfate/thiosulfate-binding protein, at 54,236 to 55,225
_4391
EX28DRAFT_4392: EX28DRAFT_4392 - CDP-diacylglycerol diphosphatase, bacterial type, at 55,333 to 56,076
_4392
EX28DRAFT_4393: EX28DRAFT_4393 - Di- and tricarboxylate transporters, at 56,150 to 57,454
_4393
EX28DRAFT_4394: EX28DRAFT_4394 - triosephosphate isomerase (EC 5.3.1.1), at 57,503 to 58,270
_4394
EX28DRAFT_4395: EX28DRAFT_4395 - Protein of unknown function (DUF1454), at 58,382 to 58,978
_4395
Position (kb) 56
57
58 Strain fitness (log2 ratio) -1
0
1 at 55.189 kb on + strand at 55.277 kb on - strand at 55.298 kb on - strand at 55.349 kb on + strand at 55.429 kb on - strand, within EX28DRAFT_4392 at 55.510 kb on + strand, within EX28DRAFT_4392 at 55.510 kb on + strand, within EX28DRAFT_4392 at 55.511 kb on - strand, within EX28DRAFT_4392 at 55.518 kb on - strand, within EX28DRAFT_4392 at 55.518 kb on - strand, within EX28DRAFT_4392 at 55.521 kb on + strand, within EX28DRAFT_4392 at 55.565 kb on - strand, within EX28DRAFT_4392 at 55.650 kb on + strand, within EX28DRAFT_4392 at 55.651 kb on - strand, within EX28DRAFT_4392 at 55.704 kb on + strand, within EX28DRAFT_4392 at 55.704 kb on + strand, within EX28DRAFT_4392 at 55.741 kb on - strand, within EX28DRAFT_4392 at 55.741 kb on - strand, within EX28DRAFT_4392 at 55.747 kb on - strand, within EX28DRAFT_4392 at 55.747 kb on - strand, within EX28DRAFT_4392 at 55.850 kb on - strand, within EX28DRAFT_4392 at 55.850 kb on - strand, within EX28DRAFT_4392 at 55.899 kb on + strand, within EX28DRAFT_4392 at 56.086 kb on - strand at 56.118 kb on - strand at 56.149 kb on + strand at 56.242 kb on + strand at 56.468 kb on + strand, within EX28DRAFT_4393 at 56.484 kb on + strand, within EX28DRAFT_4393 at 56.484 kb on + strand, within EX28DRAFT_4393 at 56.484 kb on + strand, within EX28DRAFT_4393 at 56.485 kb on - strand, within EX28DRAFT_4393 at 56.684 kb on + strand, within EX28DRAFT_4393 at 56.702 kb on + strand, within EX28DRAFT_4393 at 56.703 kb on - strand, within EX28DRAFT_4393 at 57.016 kb on + strand, within EX28DRAFT_4393 at 57.017 kb on - strand, within EX28DRAFT_4393 at 57.081 kb on + strand, within EX28DRAFT_4393 at 57.082 kb on - strand, within EX28DRAFT_4393 at 57.103 kb on + strand, within EX28DRAFT_4393 at 57.103 kb on + strand, within EX28DRAFT_4393 at 57.155 kb on - strand, within EX28DRAFT_4393 at 57.178 kb on + strand, within EX28DRAFT_4393 at 57.178 kb on + strand, within EX28DRAFT_4393 at 57.179 kb on - strand, within EX28DRAFT_4393 at 57.206 kb on + strand, within EX28DRAFT_4393 at 57.398 kb on + strand at 57.398 kb on + strand at 57.398 kb on + strand at 57.398 kb on + strand at 57.399 kb on - strand at 57.399 kb on - strand at 57.423 kb on - strand at 57.441 kb on + strand at 57.441 kb on + strand at 57.453 kb on - strand at 57.464 kb on - strand at 57.505 kb on - strand at 58.409 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 55,189 + -0.3 55,277 - +1.0 55,298 - +0.7 55,349 + +0.2 55,429 - EX28DRAFT_4392 0.13 +0.4 55,510 + EX28DRAFT_4392 0.24 +0.4 55,510 + EX28DRAFT_4392 0.24 +0.7 55,511 - EX28DRAFT_4392 0.24 -0.3 55,518 - EX28DRAFT_4392 0.25 -0.5 55,518 - EX28DRAFT_4392 0.25 -0.3 55,521 + EX28DRAFT_4392 0.25 +0.2 55,565 - EX28DRAFT_4392 0.31 +1.2 55,650 + EX28DRAFT_4392 0.43 -1.2 55,651 - EX28DRAFT_4392 0.43 +0.2 55,704 + EX28DRAFT_4392 0.50 +0.3 55,704 + EX28DRAFT_4392 0.50 +0.3 55,741 - EX28DRAFT_4392 0.55 +0.2 55,741 - EX28DRAFT_4392 0.55 +0.2 55,747 - EX28DRAFT_4392 0.56 -0.2 55,747 - EX28DRAFT_4392 0.56 +1.3 55,850 - EX28DRAFT_4392 0.69 -0.1 55,850 - EX28DRAFT_4392 0.69 +0.5 55,899 + EX28DRAFT_4392 0.76 -0.3 56,086 - -0.9 56,118 - +0.1 56,149 + +0.5 56,242 + -0.3 56,468 + EX28DRAFT_4393 0.24 -0.0 56,484 + EX28DRAFT_4393 0.26 -0.3 56,484 + EX28DRAFT_4393 0.26 -0.1 56,484 + EX28DRAFT_4393 0.26 +0.7 56,485 - EX28DRAFT_4393 0.26 +0.3 56,684 + EX28DRAFT_4393 0.41 +0.1 56,702 + EX28DRAFT_4393 0.42 +0.2 56,703 - EX28DRAFT_4393 0.42 +0.1 57,016 + EX28DRAFT_4393 0.66 +0.2 57,017 - EX28DRAFT_4393 0.66 +0.4 57,081 + EX28DRAFT_4393 0.71 -0.3 57,082 - EX28DRAFT_4393 0.71 +0.3 57,103 + EX28DRAFT_4393 0.73 -0.1 57,103 + EX28DRAFT_4393 0.73 -0.3 57,155 - EX28DRAFT_4393 0.77 +0.3 57,178 + EX28DRAFT_4393 0.79 +1.0 57,178 + EX28DRAFT_4393 0.79 -0.2 57,179 - EX28DRAFT_4393 0.79 -0.3 57,206 + EX28DRAFT_4393 0.81 +0.1 57,398 + +0.5 57,398 + -0.1 57,398 + -0.5 57,398 + -0.1 57,399 - -0.1 57,399 - -0.4 57,423 - -0.0 57,441 + +0.3 57,441 + -0.2 57,453 - +0.0 57,464 - +0.1 57,505 - -0.6 58,409 + +0.4
Or see this region's nucleotide sequence