Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4276

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4274 and EX28DRAFT_4275 are separated by 44 nucleotidesEX28DRAFT_4275 and EX28DRAFT_4276 are separated by 123 nucleotidesEX28DRAFT_4276 and EX28DRAFT_4277 are separated by 41 nucleotidesEX28DRAFT_4277 and EX28DRAFT_4278 are separated by 149 nucleotidesEX28DRAFT_4278 and EX28DRAFT_4279 are separated by 88 nucleotides EX28DRAFT_4274: EX28DRAFT_4274 - transcriptional regulator, LacI family, at 79,125 to 80,177 _4274 EX28DRAFT_4275: EX28DRAFT_4275 - Pirin-related protein, at 80,222 to 80,917 _4275 EX28DRAFT_4276: EX28DRAFT_4276 - Predicted dehydrogenases and related proteins, at 81,041 to 82,078 _4276 EX28DRAFT_4277: EX28DRAFT_4277 - RNA, at 82,120 to 82,185 _4277 EX28DRAFT_4278: EX28DRAFT_4278 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 82,335 to 82,823 _4278 EX28DRAFT_4279: EX28DRAFT_4279 - gamma-glutamyltranspeptidase, at 82,912 to 84,657 _4279 Position (kb) 81 82 83Strain fitness (log2 ratio) -2 -1 0 1 2at 80.044 kb on - strand, within EX28DRAFT_4274at 80.209 kb on + strandat 80.210 kb on - strandat 80.224 kb on - strandat 80.574 kb on + strand, within EX28DRAFT_4275at 80.607 kb on + strand, within EX28DRAFT_4275at 80.642 kb on - strand, within EX28DRAFT_4275at 80.642 kb on - strand, within EX28DRAFT_4275at 80.718 kb on + strand, within EX28DRAFT_4275at 80.718 kb on + strand, within EX28DRAFT_4275at 80.719 kb on - strand, within EX28DRAFT_4275at 80.719 kb on - strand, within EX28DRAFT_4275at 80.719 kb on - strand, within EX28DRAFT_4275at 80.719 kb on - strand, within EX28DRAFT_4275at 80.719 kb on - strand, within EX28DRAFT_4275at 80.719 kb on - strand, within EX28DRAFT_4275at 80.719 kb on - strand, within EX28DRAFT_4275at 80.829 kb on + strand, within EX28DRAFT_4275at 80.829 kb on + strand, within EX28DRAFT_4275at 80.830 kb on - strand, within EX28DRAFT_4275at 80.906 kb on + strandat 80.910 kb on + strandat 80.910 kb on + strandat 80.910 kb on + strandat 80.911 kb on - strandat 80.911 kb on - strandat 80.911 kb on - strandat 80.949 kb on - strandat 80.977 kb on + strandat 81.174 kb on + strand, within EX28DRAFT_4276at 81.175 kb on - strand, within EX28DRAFT_4276at 81.239 kb on + strand, within EX28DRAFT_4276at 81.239 kb on + strand, within EX28DRAFT_4276at 81.240 kb on - strand, within EX28DRAFT_4276at 81.240 kb on - strand, within EX28DRAFT_4276at 81.243 kb on + strand, within EX28DRAFT_4276at 81.370 kb on + strand, within EX28DRAFT_4276at 81.472 kb on + strand, within EX28DRAFT_4276at 81.472 kb on + strand, within EX28DRAFT_4276at 81.473 kb on - strand, within EX28DRAFT_4276at 81.495 kb on + strand, within EX28DRAFT_4276at 81.496 kb on - strand, within EX28DRAFT_4276at 81.496 kb on - strand, within EX28DRAFT_4276at 81.544 kb on + strand, within EX28DRAFT_4276at 81.544 kb on + strand, within EX28DRAFT_4276at 81.545 kb on - strand, within EX28DRAFT_4276at 81.545 kb on - strand, within EX28DRAFT_4276at 81.937 kb on - strand, within EX28DRAFT_4276at 82.018 kb on - strandat 82.018 kb on - strandat 82.058 kb on - strandat 82.071 kb on - strandat 82.071 kb on - strandat 82.135 kb on - strand, within EX28DRAFT_4277at 82.150 kb on + strand, within EX28DRAFT_4277at 82.150 kb on + strand, within EX28DRAFT_4277at 82.151 kb on - strand, within EX28DRAFT_4277at 82.153 kb on + strand, within EX28DRAFT_4277at 82.330 kb on - strandat 82.345 kb on + strandat 82.345 kb on + strandat 82.414 kb on - strand, within EX28DRAFT_4278at 82.414 kb on - strand, within EX28DRAFT_4278at 82.508 kb on - strand, within EX28DRAFT_4278at 82.650 kb on - strand, within EX28DRAFT_4278at 82.725 kb on + strand, within EX28DRAFT_4278at 82.726 kb on - strand, within EX28DRAFT_4278at 82.789 kb on - strandat 82.792 kb on + strandat 82.792 kb on + strandat 82.793 kb on - strandat 82.793 kb on - strandat 82.793 kb on - strandat 82.793 kb on - strandat 82.793 kb on - strandat 82.793 kb on - strandat 82.793 kb on - strandat 82.793 kb on - strandat 82.800 kb on + strandat 82.804 kb on - strandat 82.804 kb on - strandat 82.804 kb on - strandat 82.804 kb on - strandat 82.804 kb on - strandat 82.805 kb on + strandat 82.821 kb on + strandat 82.822 kb on - strandat 82.875 kb on + strandat 82.917 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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80,044 - EX28DRAFT_4274 0.87 -0.5
80,209 + +2.1
80,210 - -0.6
80,224 - -0.3
80,574 + EX28DRAFT_4275 0.51 -0.2
80,607 + EX28DRAFT_4275 0.55 +0.2
80,642 - EX28DRAFT_4275 0.60 +0.0
80,642 - EX28DRAFT_4275 0.60 +0.2
80,718 + EX28DRAFT_4275 0.71 -0.3
80,718 + EX28DRAFT_4275 0.71 -1.0
80,719 - EX28DRAFT_4275 0.71 +0.8
80,719 - EX28DRAFT_4275 0.71 +0.8
80,719 - EX28DRAFT_4275 0.71 +0.5
80,719 - EX28DRAFT_4275 0.71 +0.6
80,719 - EX28DRAFT_4275 0.71 +1.4
80,719 - EX28DRAFT_4275 0.71 -0.0
80,719 - EX28DRAFT_4275 0.71 +0.1
80,829 + EX28DRAFT_4275 0.87 -0.0
80,829 + EX28DRAFT_4275 0.87 +1.7
80,830 - EX28DRAFT_4275 0.87 -0.3
80,906 + +0.4
80,910 + -0.1
80,910 + +0.0
80,910 + -0.4
80,911 - +0.3
80,911 - -0.4
80,911 - +0.3
80,949 - +1.1
80,977 + -0.5
81,174 + EX28DRAFT_4276 0.13 -0.7
81,175 - EX28DRAFT_4276 0.13 -0.7
81,239 + EX28DRAFT_4276 0.19 -0.2
81,239 + EX28DRAFT_4276 0.19 -0.3
81,240 - EX28DRAFT_4276 0.19 +0.1
81,240 - EX28DRAFT_4276 0.19 -0.5
81,243 + EX28DRAFT_4276 0.19 -0.1
81,370 + EX28DRAFT_4276 0.32 -0.1
81,472 + EX28DRAFT_4276 0.42 -1.1
81,472 + EX28DRAFT_4276 0.42 -1.1
81,473 - EX28DRAFT_4276 0.42 +0.4
81,495 + EX28DRAFT_4276 0.44 -1.8
81,496 - EX28DRAFT_4276 0.44 +0.0
81,496 - EX28DRAFT_4276 0.44 -0.1
81,544 + EX28DRAFT_4276 0.48 +0.0
81,544 + EX28DRAFT_4276 0.48 +0.0
81,545 - EX28DRAFT_4276 0.49 +1.2
81,545 - EX28DRAFT_4276 0.49 -1.0
81,937 - EX28DRAFT_4276 0.86 +0.6
82,018 - -0.4
82,018 - -0.0
82,058 - +0.2
82,071 - +0.3
82,071 - -0.4
82,135 - EX28DRAFT_4277 0.23 +0.0
82,150 + EX28DRAFT_4277 0.45 +0.6
82,150 + EX28DRAFT_4277 0.45 -0.9
82,151 - EX28DRAFT_4277 0.47 -0.4
82,153 + EX28DRAFT_4277 0.50 +0.4
82,330 - +0.1
82,345 + +0.2
82,345 + -0.3
82,414 - EX28DRAFT_4278 0.16 -0.7
82,414 - EX28DRAFT_4278 0.16 +0.8
82,508 - EX28DRAFT_4278 0.35 -0.4
82,650 - EX28DRAFT_4278 0.64 -0.3
82,725 + EX28DRAFT_4278 0.80 -0.7
82,726 - EX28DRAFT_4278 0.80 +2.1
82,789 - +0.1
82,792 + -0.1
82,792 + -0.0
82,793 - +0.1
82,793 - +0.1
82,793 - -0.5
82,793 - +0.2
82,793 - -0.4
82,793 - +0.1
82,793 - +0.7
82,793 - +0.3
82,800 + +0.1
82,804 - +1.1
82,804 - +0.2
82,804 - -0.7
82,804 - -0.1
82,804 - +0.6
82,805 + -0.4
82,821 + -0.3
82,822 - +0.2
82,875 + -0.1
82,917 - -0.2

Or see this region's nucleotide sequence