Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4250 and EX28DRAFT_4251 are separated by 206 nucleotides EX28DRAFT_4251 and EX28DRAFT_4252 are separated by 75 nucleotides EX28DRAFT_4252 and EX28DRAFT_4253 overlap by 1 nucleotides
EX28DRAFT_4250: EX28DRAFT_4250 - Aspartate/tyrosine/aromatic aminotransferase, at 57,225 to 58,418
_4250
EX28DRAFT_4251: EX28DRAFT_4251 - Protein of unknown function (DUF2589), at 58,625 to 59,182
_4251
EX28DRAFT_4252: EX28DRAFT_4252 - Protein of unknown function (DUF2589), at 59,258 to 59,860
_4252
EX28DRAFT_4253: EX28DRAFT_4253 - Phage-related lysozyme (muraminidase), at 59,860 to 60,309
_4253
Position (kb)
58
59
60 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 57.775 kb on + strand, within EX28DRAFT_4250 at 57.816 kb on + strand, within EX28DRAFT_4250 at 57.817 kb on - strand, within EX28DRAFT_4250 at 58.066 kb on + strand, within EX28DRAFT_4250 at 58.067 kb on - strand, within EX28DRAFT_4250 at 58.223 kb on - strand, within EX28DRAFT_4250 at 58.293 kb on - strand, within EX28DRAFT_4250 at 58.309 kb on + strand at 58.309 kb on + strand at 58.313 kb on - strand at 58.313 kb on - strand at 58.325 kb on + strand at 58.325 kb on + strand at 58.383 kb on - strand at 58.461 kb on + strand at 58.462 kb on - strand at 58.462 kb on - strand at 58.514 kb on - strand at 58.552 kb on - strand at 58.640 kb on - strand at 58.651 kb on + strand at 58.675 kb on + strand at 58.676 kb on - strand at 58.676 kb on - strand at 58.676 kb on - strand at 58.676 kb on - strand at 58.733 kb on + strand, within EX28DRAFT_4251 at 58.831 kb on + strand, within EX28DRAFT_4251 at 59.066 kb on - strand, within EX28DRAFT_4251 at 59.089 kb on + strand, within EX28DRAFT_4251 at 59.098 kb on + strand, within EX28DRAFT_4251 at 59.141 kb on + strand at 59.141 kb on + strand at 59.141 kb on + strand at 59.142 kb on - strand at 59.200 kb on + strand at 59.200 kb on + strand at 59.200 kb on + strand at 59.201 kb on - strand at 59.408 kb on - strand, within EX28DRAFT_4252 at 59.408 kb on - strand, within EX28DRAFT_4252 at 59.426 kb on + strand, within EX28DRAFT_4252 at 59.465 kb on + strand, within EX28DRAFT_4252 at 59.465 kb on + strand, within EX28DRAFT_4252 at 59.467 kb on + strand, within EX28DRAFT_4252 at 59.467 kb on + strand, within EX28DRAFT_4252 at 59.467 kb on + strand, within EX28DRAFT_4252 at 59.467 kb on + strand, within EX28DRAFT_4252 at 59.468 kb on - strand, within EX28DRAFT_4252 at 59.814 kb on - strand at 59.880 kb on + strand at 59.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 57,775 + EX28DRAFT_4250 0.46 -0.5 57,816 + EX28DRAFT_4250 0.49 -0.6 57,817 - EX28DRAFT_4250 0.50 +0.4 58,066 + EX28DRAFT_4250 0.70 -0.0 58,067 - EX28DRAFT_4250 0.71 -0.1 58,223 - EX28DRAFT_4250 0.84 -1.0 58,293 - EX28DRAFT_4250 0.89 -0.2 58,309 + -0.2 58,309 + -0.4 58,313 - -0.1 58,313 - -0.1 58,325 + -1.7 58,325 + -1.0 58,383 - +0.4 58,461 + -0.9 58,462 - +0.2 58,462 - -0.2 58,514 - -0.2 58,552 - -1.5 58,640 - -0.8 58,651 + +0.0 58,675 + -0.6 58,676 - +3.1 58,676 - -0.0 58,676 - +0.3 58,676 - +0.0 58,733 + EX28DRAFT_4251 0.19 +0.1 58,831 + EX28DRAFT_4251 0.37 +0.6 59,066 - EX28DRAFT_4251 0.79 +0.9 59,089 + EX28DRAFT_4251 0.83 -0.2 59,098 + EX28DRAFT_4251 0.85 +0.1 59,141 + +0.5 59,141 + +0.3 59,141 + -0.3 59,142 - +0.1 59,200 + +0.5 59,200 + +0.6 59,200 + +0.2 59,201 - +1.1 59,408 - EX28DRAFT_4252 0.25 +0.3 59,408 - EX28DRAFT_4252 0.25 -0.5 59,426 + EX28DRAFT_4252 0.28 +0.5 59,465 + EX28DRAFT_4252 0.34 +0.6 59,465 + EX28DRAFT_4252 0.34 +0.5 59,467 + EX28DRAFT_4252 0.35 +0.2 59,467 + EX28DRAFT_4252 0.35 -0.3 59,467 + EX28DRAFT_4252 0.35 +0.2 59,467 + EX28DRAFT_4252 0.35 +0.8 59,468 - EX28DRAFT_4252 0.35 -0.3 59,814 - -2.0 59,880 + +0.5 59,881 - -0.1
Or see this region's nucleotide sequence