Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4221 and EX28DRAFT_4222 are separated by 240 nucleotides EX28DRAFT_4222 and EX28DRAFT_4223 are separated by 5 nucleotides EX28DRAFT_4223 and EX28DRAFT_4224 overlap by 1 nucleotides EX28DRAFT_4224 and EX28DRAFT_4225 are separated by 2 nucleotides
EX28DRAFT_4221: EX28DRAFT_4221 - Sugar kinases, ribokinase family, at 27,897 to 28,910
_4221
EX28DRAFT_4222: EX28DRAFT_4222 - hypothetical protein, at 29,151 to 29,729
_4222
EX28DRAFT_4223: EX28DRAFT_4223 - hypothetical protein, at 29,735 to 30,949
_4223
EX28DRAFT_4224: EX28DRAFT_4224 - Predicted double-glycine peptidase, at 30,949 to 31,476
_4224
EX28DRAFT_4225: EX28DRAFT_4225 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 31,479 to 32,210
_4225
Position (kb) 29
30
31 Strain fitness (log2 ratio) -2
-1
0
1
2 at 28.797 kb on + strand, within EX28DRAFT_4221 at 28.798 kb on - strand, within EX28DRAFT_4221 at 28.892 kb on + strand at 28.913 kb on + strand at 28.931 kb on + strand at 28.942 kb on + strand at 28.964 kb on + strand at 28.985 kb on - strand at 29.108 kb on + strand at 29.108 kb on + strand at 29.109 kb on - strand at 29.294 kb on + strand, within EX28DRAFT_4222 at 29.343 kb on + strand, within EX28DRAFT_4222 at 29.437 kb on - strand, within EX28DRAFT_4222 at 29.439 kb on - strand, within EX28DRAFT_4222 at 29.441 kb on - strand, within EX28DRAFT_4222 at 29.444 kb on + strand, within EX28DRAFT_4222 at 29.445 kb on - strand, within EX28DRAFT_4222 at 29.484 kb on + strand, within EX28DRAFT_4222 at 29.489 kb on - strand, within EX28DRAFT_4222 at 29.637 kb on + strand, within EX28DRAFT_4222 at 29.638 kb on - strand, within EX28DRAFT_4222 at 29.770 kb on + strand at 29.849 kb on - strand at 29.933 kb on - strand, within EX28DRAFT_4223 at 29.939 kb on + strand, within EX28DRAFT_4223 at 29.984 kb on - strand, within EX28DRAFT_4223 at 30.097 kb on + strand, within EX28DRAFT_4223 at 30.102 kb on + strand, within EX28DRAFT_4223 at 30.103 kb on - strand, within EX28DRAFT_4223 at 30.340 kb on - strand, within EX28DRAFT_4223 at 30.421 kb on - strand, within EX28DRAFT_4223 at 30.496 kb on + strand, within EX28DRAFT_4223 at 30.519 kb on - strand, within EX28DRAFT_4223 at 30.519 kb on - strand, within EX28DRAFT_4223 at 30.557 kb on - strand, within EX28DRAFT_4223 at 30.734 kb on - strand, within EX28DRAFT_4223 at 30.764 kb on + strand, within EX28DRAFT_4223 at 30.764 kb on + strand, within EX28DRAFT_4223 at 30.765 kb on - strand, within EX28DRAFT_4223 at 30.765 kb on - strand, within EX28DRAFT_4223 at 30.765 kb on - strand, within EX28DRAFT_4223 at 30.765 kb on - strand, within EX28DRAFT_4223 at 30.765 kb on - strand, within EX28DRAFT_4223 at 30.766 kb on + strand, within EX28DRAFT_4223 at 30.767 kb on - strand, within EX28DRAFT_4223 at 30.779 kb on - strand, within EX28DRAFT_4223 at 30.782 kb on - strand, within EX28DRAFT_4223 at 30.788 kb on + strand, within EX28DRAFT_4223 at 30.878 kb on - strand at 30.971 kb on + strand at 30.971 kb on + strand at 30.977 kb on + strand at 31.001 kb on - strand at 31.100 kb on + strand, within EX28DRAFT_4224 at 31.100 kb on + strand, within EX28DRAFT_4224 at 31.152 kb on + strand, within EX28DRAFT_4224 at 31.327 kb on + strand, within EX28DRAFT_4224 at 31.359 kb on + strand, within EX28DRAFT_4224 at 31.475 kb on + strand at 31.477 kb on + strand at 31.478 kb on - strand at 31.478 kb on - strand at 31.478 kb on - strand at 31.480 kb on + strand at 31.481 kb on - strand at 31.481 kb on - strand at 31.523 kb on - strand at 31.715 kb on - strand, within EX28DRAFT_4225 at 31.910 kb on - strand, within EX28DRAFT_4225 at 31.910 kb on - strand, within EX28DRAFT_4225
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 28,797 + EX28DRAFT_4221 0.89 +0.4 28,798 - EX28DRAFT_4221 0.89 +0.5 28,892 + +0.3 28,913 + -0.0 28,931 + -1.1 28,942 + -0.2 28,964 + -0.2 28,985 - +0.4 29,108 + -0.6 29,108 + -0.2 29,109 - -0.1 29,294 + EX28DRAFT_4222 0.25 +2.6 29,343 + EX28DRAFT_4222 0.33 +0.8 29,437 - EX28DRAFT_4222 0.49 -0.9 29,439 - EX28DRAFT_4222 0.50 +1.1 29,441 - EX28DRAFT_4222 0.50 +0.1 29,444 + EX28DRAFT_4222 0.51 -0.9 29,445 - EX28DRAFT_4222 0.51 -0.7 29,484 + EX28DRAFT_4222 0.58 +0.4 29,489 - EX28DRAFT_4222 0.58 -0.3 29,637 + EX28DRAFT_4222 0.84 -0.5 29,638 - EX28DRAFT_4222 0.84 +0.3 29,770 + -0.3 29,849 - +0.0 29,933 - EX28DRAFT_4223 0.16 +0.2 29,939 + EX28DRAFT_4223 0.17 -0.3 29,984 - EX28DRAFT_4223 0.20 +2.5 30,097 + EX28DRAFT_4223 0.30 +0.1 30,102 + EX28DRAFT_4223 0.30 +0.4 30,103 - EX28DRAFT_4223 0.30 +0.3 30,340 - EX28DRAFT_4223 0.50 +0.2 30,421 - EX28DRAFT_4223 0.56 -0.5 30,496 + EX28DRAFT_4223 0.63 -0.4 30,519 - EX28DRAFT_4223 0.65 -1.5 30,519 - EX28DRAFT_4223 0.65 -0.0 30,557 - EX28DRAFT_4223 0.68 +0.2 30,734 - EX28DRAFT_4223 0.82 +0.5 30,764 + EX28DRAFT_4223 0.85 +0.2 30,764 + EX28DRAFT_4223 0.85 -1.3 30,765 - EX28DRAFT_4223 0.85 -0.6 30,765 - EX28DRAFT_4223 0.85 -0.2 30,765 - EX28DRAFT_4223 0.85 +0.3 30,765 - EX28DRAFT_4223 0.85 +0.1 30,765 - EX28DRAFT_4223 0.85 -0.0 30,766 + EX28DRAFT_4223 0.85 +0.1 30,767 - EX28DRAFT_4223 0.85 -0.2 30,779 - EX28DRAFT_4223 0.86 +0.1 30,782 - EX28DRAFT_4223 0.86 -0.2 30,788 + EX28DRAFT_4223 0.87 -0.2 30,878 - -0.2 30,971 + -0.4 30,971 + +0.4 30,977 + -0.3 31,001 - -0.1 31,100 + EX28DRAFT_4224 0.29 +1.1 31,100 + EX28DRAFT_4224 0.29 +0.0 31,152 + EX28DRAFT_4224 0.38 +0.8 31,327 + EX28DRAFT_4224 0.72 -0.4 31,359 + EX28DRAFT_4224 0.78 -2.7 31,475 + -0.5 31,477 + -0.3 31,478 - +0.2 31,478 - -0.0 31,478 - +0.3 31,480 + -0.3 31,481 - -2.2 31,481 - +0.1 31,523 - -0.1 31,715 - EX28DRAFT_4225 0.32 +0.0 31,910 - EX28DRAFT_4225 0.59 +0.3 31,910 - EX28DRAFT_4225 0.59 +0.0
Or see this region's nucleotide sequence