Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4133

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4130 and EX28DRAFT_4131 are separated by 111 nucleotidesEX28DRAFT_4131 and EX28DRAFT_4132 are separated by 33 nucleotidesEX28DRAFT_4132 and EX28DRAFT_4133 are separated by 10 nucleotidesEX28DRAFT_4133 and EX28DRAFT_4134 are separated by 30 nucleotidesEX28DRAFT_4134 and EX28DRAFT_4135 are separated by 206 nucleotidesEX28DRAFT_4135 and EX28DRAFT_4136 are separated by 8 nucleotides EX28DRAFT_4130: EX28DRAFT_4130 - pimelyl-[acyl-carrier protein] methyl ester esterase, at 110,268 to 111,041 _4130 EX28DRAFT_4131: EX28DRAFT_4131 - Protein of unknown function (DUF1471), at 111,153 to 111,422 _4131 EX28DRAFT_4132: EX28DRAFT_4132 - FeoC like transcriptional regulator, at 111,456 to 111,692 _4132 EX28DRAFT_4133: EX28DRAFT_4133 - ferrous iron transporter FeoB, at 111,703 to 114,021 _4133 EX28DRAFT_4134: EX28DRAFT_4134 - Fe2+ transport system protein A, at 114,052 to 114,279 _4134 EX28DRAFT_4135: EX28DRAFT_4135 - hypothetical protein, at 114,486 to 114,608 _4135 EX28DRAFT_4136: EX28DRAFT_4136 - Transcriptional accessory protein, at 114,617 to 116,947 _4136 Position (kb) 111 112 113 114 115Strain fitness (log2 ratio) -1 0 1 2 3at 110.870 kb on + strand, within EX28DRAFT_4130at 110.874 kb on + strand, within EX28DRAFT_4130at 110.874 kb on + strand, within EX28DRAFT_4130at 110.875 kb on - strand, within EX28DRAFT_4130at 110.875 kb on - strand, within EX28DRAFT_4130at 110.875 kb on - strand, within EX28DRAFT_4130at 110.875 kb on - strand, within EX28DRAFT_4130at 110.981 kb on + strandat 110.981 kb on + strandat 110.982 kb on - strandat 111.085 kb on - strandat 111.114 kb on + strandat 111.354 kb on + strand, within EX28DRAFT_4131at 111.355 kb on - strand, within EX28DRAFT_4131at 111.355 kb on - strand, within EX28DRAFT_4131at 111.357 kb on + strand, within EX28DRAFT_4131at 111.357 kb on + strand, within EX28DRAFT_4131at 111.357 kb on + strand, within EX28DRAFT_4131at 111.358 kb on - strand, within EX28DRAFT_4131at 111.414 kb on + strandat 111.414 kb on + strandat 111.415 kb on - strandat 111.421 kb on - strandat 111.421 kb on - strandat 111.421 kb on - strandat 111.421 kb on - strandat 111.423 kb on + strandat 111.424 kb on - strandat 111.480 kb on + strand, within EX28DRAFT_4132at 111.510 kb on - strand, within EX28DRAFT_4132at 111.510 kb on - strand, within EX28DRAFT_4132at 111.510 kb on - strand, within EX28DRAFT_4132at 111.840 kb on + strandat 111.840 kb on + strandat 111.919 kb on + strandat 112.022 kb on + strand, within EX28DRAFT_4133at 112.022 kb on + strand, within EX28DRAFT_4133at 112.028 kb on + strand, within EX28DRAFT_4133at 112.401 kb on + strand, within EX28DRAFT_4133at 112.548 kb on - strand, within EX28DRAFT_4133at 112.623 kb on + strand, within EX28DRAFT_4133at 112.734 kb on + strand, within EX28DRAFT_4133at 112.735 kb on - strand, within EX28DRAFT_4133at 112.735 kb on - strand, within EX28DRAFT_4133at 112.813 kb on - strand, within EX28DRAFT_4133at 112.907 kb on + strand, within EX28DRAFT_4133at 112.908 kb on - strand, within EX28DRAFT_4133at 112.940 kb on + strand, within EX28DRAFT_4133at 112.940 kb on + strand, within EX28DRAFT_4133at 112.941 kb on - strand, within EX28DRAFT_4133at 113.059 kb on - strand, within EX28DRAFT_4133at 113.144 kb on + strand, within EX28DRAFT_4133at 113.144 kb on + strand, within EX28DRAFT_4133at 113.145 kb on - strand, within EX28DRAFT_4133at 113.145 kb on - strand, within EX28DRAFT_4133at 113.145 kb on - strand, within EX28DRAFT_4133at 113.381 kb on + strand, within EX28DRAFT_4133at 113.381 kb on + strand, within EX28DRAFT_4133at 113.381 kb on + strand, within EX28DRAFT_4133at 113.381 kb on + strand, within EX28DRAFT_4133at 113.382 kb on - strand, within EX28DRAFT_4133at 113.385 kb on + strand, within EX28DRAFT_4133at 113.714 kb on + strand, within EX28DRAFT_4133at 113.715 kb on - strand, within EX28DRAFT_4133at 113.722 kb on - strand, within EX28DRAFT_4133at 113.781 kb on + strand, within EX28DRAFT_4133at 113.782 kb on - strand, within EX28DRAFT_4133at 113.784 kb on - strand, within EX28DRAFT_4133at 113.902 kb on - strandat 113.986 kb on - strandat 113.998 kb on + strandat 114.007 kb on - strandat 114.076 kb on + strand, within EX28DRAFT_4134at 114.096 kb on + strand, within EX28DRAFT_4134at 114.112 kb on + strand, within EX28DRAFT_4134at 114.307 kb on + strandat 114.308 kb on - strandat 114.312 kb on - strandat 114.352 kb on + strandat 114.381 kb on - strandat 114.383 kb on + strandat 114.465 kb on + strandat 114.503 kb on + strand, within EX28DRAFT_4135at 114.503 kb on + strand, within EX28DRAFT_4135at 114.506 kb on - strand, within EX28DRAFT_4135at 114.910 kb on + strand, within EX28DRAFT_4136

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
110,870 + EX28DRAFT_4130 0.78 +3.1
110,874 + EX28DRAFT_4130 0.78 -0.9
110,874 + EX28DRAFT_4130 0.78 -0.5
110,875 - EX28DRAFT_4130 0.78 -1.7
110,875 - EX28DRAFT_4130 0.78 -0.7
110,875 - EX28DRAFT_4130 0.78 -0.6
110,875 - EX28DRAFT_4130 0.78 +0.2
110,981 + +0.0
110,981 + -0.7
110,982 - -0.5
111,085 - +0.0
111,114 + -0.5
111,354 + EX28DRAFT_4131 0.74 -0.7
111,355 - EX28DRAFT_4131 0.75 +0.1
111,355 - EX28DRAFT_4131 0.75 -1.0
111,357 + EX28DRAFT_4131 0.76 -0.2
111,357 + EX28DRAFT_4131 0.76 +0.3
111,357 + EX28DRAFT_4131 0.76 +0.9
111,358 - EX28DRAFT_4131 0.76 +0.0
111,414 + -0.2
111,414 + +0.1
111,415 - -0.1
111,421 - -0.2
111,421 - -0.5
111,421 - -0.2
111,421 - +0.3
111,423 + +0.4
111,424 - -0.2
111,480 + EX28DRAFT_4132 0.10 +0.1
111,510 - EX28DRAFT_4132 0.23 +0.7
111,510 - EX28DRAFT_4132 0.23 +0.7
111,510 - EX28DRAFT_4132 0.23 -0.2
111,840 + +0.6
111,840 + +0.5
111,919 + +0.7
112,022 + EX28DRAFT_4133 0.14 +0.7
112,022 + EX28DRAFT_4133 0.14 +0.2
112,028 + EX28DRAFT_4133 0.14 +0.6
112,401 + EX28DRAFT_4133 0.30 +0.3
112,548 - EX28DRAFT_4133 0.36 +0.4
112,623 + EX28DRAFT_4133 0.40 -0.2
112,734 + EX28DRAFT_4133 0.44 +0.6
112,735 - EX28DRAFT_4133 0.45 -0.1
112,735 - EX28DRAFT_4133 0.45 +0.8
112,813 - EX28DRAFT_4133 0.48 +0.6
112,907 + EX28DRAFT_4133 0.52 +0.6
112,908 - EX28DRAFT_4133 0.52 +0.5
112,940 + EX28DRAFT_4133 0.53 -1.1
112,940 + EX28DRAFT_4133 0.53 +0.7
112,941 - EX28DRAFT_4133 0.53 +0.8
113,059 - EX28DRAFT_4133 0.58 -0.3
113,144 + EX28DRAFT_4133 0.62 +0.7
113,144 + EX28DRAFT_4133 0.62 +0.6
113,145 - EX28DRAFT_4133 0.62 +0.6
113,145 - EX28DRAFT_4133 0.62 +0.4
113,145 - EX28DRAFT_4133 0.62 +0.4
113,381 + EX28DRAFT_4133 0.72 +1.2
113,381 + EX28DRAFT_4133 0.72 +0.1
113,381 + EX28DRAFT_4133 0.72 +0.2
113,381 + EX28DRAFT_4133 0.72 -0.1
113,382 - EX28DRAFT_4133 0.72 +0.6
113,385 + EX28DRAFT_4133 0.73 -0.3
113,714 + EX28DRAFT_4133 0.87 +1.2
113,715 - EX28DRAFT_4133 0.87 +0.4
113,722 - EX28DRAFT_4133 0.87 +0.3
113,781 + EX28DRAFT_4133 0.90 +0.6
113,782 - EX28DRAFT_4133 0.90 +0.6
113,784 - EX28DRAFT_4133 0.90 +0.6
113,902 - +0.5
113,986 - +0.8
113,998 + +0.8
114,007 - +0.8
114,076 + EX28DRAFT_4134 0.11 +0.4
114,096 + EX28DRAFT_4134 0.19 +0.4
114,112 + EX28DRAFT_4134 0.26 -0.3
114,307 + +2.3
114,308 - +0.3
114,312 - +0.5
114,352 + +0.9
114,381 - +0.7
114,383 + +0.2
114,465 + +0.7
114,503 + EX28DRAFT_4135 0.14 +0.5
114,503 + EX28DRAFT_4135 0.14 +2.4
114,506 - EX28DRAFT_4135 0.16 +0.3
114,910 + EX28DRAFT_4136 0.13 -0.1

Or see this region's nucleotide sequence