Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4127

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4126 and EX28DRAFT_4127 are separated by 67 nucleotidesEX28DRAFT_4127 and EX28DRAFT_4128 are separated by 385 nucleotides EX28DRAFT_4126: EX28DRAFT_4126 - 4-alpha-glucanotransferase, at 105,063 to 107,141 _4126 EX28DRAFT_4127: EX28DRAFT_4127 - gluconate transporter, at 107,209 to 108,525 _4127 EX28DRAFT_4128: EX28DRAFT_4128 - IscR-regulated protein YhgI, at 108,911 to 109,486 _4128 Position (kb) 107 108 109Strain fitness (log2 ratio) -2 -1 0 1at 106.467 kb on + strand, within EX28DRAFT_4126at 106.518 kb on - strand, within EX28DRAFT_4126at 106.518 kb on - strand, within EX28DRAFT_4126at 106.602 kb on + strand, within EX28DRAFT_4126at 106.602 kb on + strand, within EX28DRAFT_4126at 106.608 kb on + strand, within EX28DRAFT_4126at 106.609 kb on - strand, within EX28DRAFT_4126at 106.610 kb on + strand, within EX28DRAFT_4126at 106.611 kb on - strand, within EX28DRAFT_4126at 106.611 kb on - strand, within EX28DRAFT_4126at 106.722 kb on + strand, within EX28DRAFT_4126at 106.797 kb on + strand, within EX28DRAFT_4126at 106.877 kb on + strand, within EX28DRAFT_4126at 106.930 kb on - strand, within EX28DRAFT_4126at 107.019 kb on + strandat 107.019 kb on + strandat 107.025 kb on + strandat 107.026 kb on - strandat 107.026 kb on - strandat 107.099 kb on + strandat 107.107 kb on + strandat 107.170 kb on + strandat 107.206 kb on - strandat 107.221 kb on - strandat 107.316 kb on - strandat 107.404 kb on + strand, within EX28DRAFT_4127at 107.499 kb on + strand, within EX28DRAFT_4127at 107.499 kb on + strand, within EX28DRAFT_4127at 107.500 kb on - strand, within EX28DRAFT_4127at 107.555 kb on + strand, within EX28DRAFT_4127at 107.556 kb on - strand, within EX28DRAFT_4127at 107.556 kb on - strand, within EX28DRAFT_4127at 107.556 kb on - strand, within EX28DRAFT_4127at 107.556 kb on - strand, within EX28DRAFT_4127at 107.655 kb on + strand, within EX28DRAFT_4127at 107.901 kb on - strand, within EX28DRAFT_4127at 108.009 kb on + strand, within EX28DRAFT_4127at 108.009 kb on + strand, within EX28DRAFT_4127at 108.113 kb on + strand, within EX28DRAFT_4127at 108.113 kb on + strand, within EX28DRAFT_4127at 108.114 kb on - strand, within EX28DRAFT_4127at 108.277 kb on - strand, within EX28DRAFT_4127at 108.490 kb on + strandat 108.490 kb on + strandat 108.490 kb on + strandat 108.491 kb on - strandat 108.491 kb on - strandat 108.491 kb on - strandat 108.531 kb on - strandat 108.759 kb on + strandat 108.761 kb on + strandat 108.762 kb on - strandat 108.762 kb on - strandat 108.817 kb on + strandat 108.912 kb on + strandat 108.913 kb on - strandat 108.916 kb on - strandat 108.919 kb on - strandat 108.919 kb on - strandat 109.360 kb on - strand, within EX28DRAFT_4128at 109.478 kb on - strandat 109.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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106,467 + EX28DRAFT_4126 0.68 -0.2
106,518 - EX28DRAFT_4126 0.70 -0.1
106,518 - EX28DRAFT_4126 0.70 -0.1
106,602 + EX28DRAFT_4126 0.74 +0.2
106,602 + EX28DRAFT_4126 0.74 +0.4
106,608 + EX28DRAFT_4126 0.74 -0.9
106,609 - EX28DRAFT_4126 0.74 +0.3
106,610 + EX28DRAFT_4126 0.74 +0.3
106,611 - EX28DRAFT_4126 0.74 +0.2
106,611 - EX28DRAFT_4126 0.74 -0.2
106,722 + EX28DRAFT_4126 0.80 -0.8
106,797 + EX28DRAFT_4126 0.83 +0.4
106,877 + EX28DRAFT_4126 0.87 +0.4
106,930 - EX28DRAFT_4126 0.90 +0.6
107,019 + -0.1
107,019 + +0.3
107,025 + -0.4
107,026 - -1.4
107,026 - -0.3
107,099 + +0.3
107,107 + -0.3
107,170 + +0.4
107,206 - +0.0
107,221 - -0.4
107,316 - -0.8
107,404 + EX28DRAFT_4127 0.15 -1.4
107,499 + EX28DRAFT_4127 0.22 +0.7
107,499 + EX28DRAFT_4127 0.22 +0.2
107,500 - EX28DRAFT_4127 0.22 -0.1
107,555 + EX28DRAFT_4127 0.26 +0.0
107,556 - EX28DRAFT_4127 0.26 +0.6
107,556 - EX28DRAFT_4127 0.26 +0.3
107,556 - EX28DRAFT_4127 0.26 -1.6
107,556 - EX28DRAFT_4127 0.26 +0.1
107,655 + EX28DRAFT_4127 0.34 -1.1
107,901 - EX28DRAFT_4127 0.53 +0.0
108,009 + EX28DRAFT_4127 0.61 -0.3
108,009 + EX28DRAFT_4127 0.61 +0.1
108,113 + EX28DRAFT_4127 0.69 -0.8
108,113 + EX28DRAFT_4127 0.69 +0.1
108,114 - EX28DRAFT_4127 0.69 +0.2
108,277 - EX28DRAFT_4127 0.81 -0.3
108,490 + -0.5
108,490 + +0.9
108,490 + -0.3
108,491 - +0.1
108,491 - -0.8
108,491 - +0.5
108,531 - -0.9
108,759 + +0.3
108,761 + +0.1
108,762 - -0.0
108,762 - -0.8
108,817 + -0.3
108,912 + +0.0
108,913 - -0.1
108,916 - -0.8
108,919 - -1.9
108,919 - -0.3
109,360 - EX28DRAFT_4128 0.78 -0.2
109,478 - -1.4
109,487 - -2.3

Or see this region's nucleotide sequence