Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4074 and EX28DRAFT_4075 are separated by 317 nucleotides EX28DRAFT_4075 and EX28DRAFT_4076 are separated by 167 nucleotides EX28DRAFT_4076 and EX28DRAFT_4077 are separated by 60 nucleotides
EX28DRAFT_4074: EX28DRAFT_4074 - Sugar phosphate permease, at 48,926 to 50,260
_4074
EX28DRAFT_4075: EX28DRAFT_4075 - Ion channel, at 50,578 to 50,976
_4075
EX28DRAFT_4076: EX28DRAFT_4076 - integral membrane protein, TerC family, at 51,144 to 52,169
_4076
EX28DRAFT_4077: EX28DRAFT_4077 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 52,230 to 52,892
_4077
Position (kb)
51
52
53 Strain fitness (log2 ratio)
-1
0
1
2 at 50.157 kb on + strand at 50.157 kb on + strand at 50.216 kb on + strand at 50.216 kb on + strand at 50.216 kb on + strand at 50.216 kb on + strand at 50.216 kb on + strand at 50.217 kb on - strand at 50.217 kb on - strand at 50.242 kb on + strand at 50.246 kb on + strand at 50.246 kb on + strand at 50.246 kb on + strand at 50.246 kb on + strand at 50.377 kb on + strand at 50.377 kb on + strand at 50.378 kb on - strand at 50.378 kb on - strand at 50.381 kb on + strand at 50.382 kb on - strand at 50.414 kb on - strand at 50.414 kb on - strand at 50.415 kb on + strand at 50.415 kb on + strand at 50.416 kb on - strand at 50.446 kb on + strand at 50.446 kb on + strand at 50.514 kb on + strand at 50.514 kb on + strand at 50.514 kb on + strand at 50.514 kb on + strand at 50.514 kb on + strand at 50.515 kb on - strand at 50.553 kb on + strand at 50.586 kb on - strand at 50.586 kb on - strand at 50.586 kb on - strand at 50.596 kb on - strand at 50.599 kb on - strand at 50.696 kb on + strand, within EX28DRAFT_4075 at 50.768 kb on - strand, within EX28DRAFT_4075 at 50.787 kb on + strand, within EX28DRAFT_4075 at 50.828 kb on - strand, within EX28DRAFT_4075 at 50.901 kb on - strand, within EX28DRAFT_4075 at 51.005 kb on - strand at 51.009 kb on + strand at 51.010 kb on - strand at 51.010 kb on - strand at 51.014 kb on + strand at 51.014 kb on + strand at 51.015 kb on - strand at 51.143 kb on + strand at 51.143 kb on + strand at 51.143 kb on + strand at 51.143 kb on + strand at 51.144 kb on - strand at 51.144 kb on - strand at 51.231 kb on - strand at 51.324 kb on + strand, within EX28DRAFT_4076 at 51.325 kb on - strand, within EX28DRAFT_4076 at 51.795 kb on + strand, within EX28DRAFT_4076 at 51.907 kb on - strand, within EX28DRAFT_4076 at 51.907 kb on - strand, within EX28DRAFT_4076 at 51.948 kb on + strand, within EX28DRAFT_4076 at 51.948 kb on + strand, within EX28DRAFT_4076 at 51.948 kb on + strand, within EX28DRAFT_4076 at 52.130 kb on + strand at 52.133 kb on - strand at 52.173 kb on - strand at 52.413 kb on - strand, within EX28DRAFT_4077 at 52.799 kb on + strand, within EX28DRAFT_4077 at 52.892 kb on + strand at 52.904 kb on - strand at 52.933 kb on + strand at 52.942 kb on + strand at 52.943 kb on - strand at 52.943 kb on - strand at 52.957 kb on + strand at 52.957 kb on + strand at 52.958 kb on - strand at 52.960 kb on - strand at 52.960 kb on - strand at 53.046 kb on + strand at 53.069 kb on + strand at 53.073 kb on + strand at 53.117 kb on + strand at 53.117 kb on + strand at 53.117 kb on + strand at 53.117 kb on + strand at 53.132 kb on - strand at 53.140 kb on + strand at 53.140 kb on + strand at 53.141 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 50,157 + -0.6 50,157 + -0.3 50,216 + +0.1 50,216 + -0.4 50,216 + -0.1 50,216 + -0.6 50,216 + +0.6 50,217 - -0.2 50,217 - -0.3 50,242 + -1.2 50,246 + -0.4 50,246 + -0.1 50,246 + +0.4 50,246 + +0.5 50,377 + +0.9 50,377 + -0.2 50,378 - +0.2 50,378 - -0.5 50,381 + -0.5 50,382 - +0.7 50,414 - -0.2 50,414 - -0.5 50,415 + +0.5 50,415 + +0.5 50,416 - -0.7 50,446 + -0.0 50,446 + -0.3 50,514 + -0.2 50,514 + +0.2 50,514 + -0.1 50,514 + -0.2 50,514 + -0.3 50,515 - +0.1 50,553 + +0.3 50,586 - +0.6 50,586 - +0.2 50,586 - +0.3 50,596 - -0.6 50,599 - -0.1 50,696 + EX28DRAFT_4075 0.30 -0.3 50,768 - EX28DRAFT_4075 0.48 -0.6 50,787 + EX28DRAFT_4075 0.52 +0.4 50,828 - EX28DRAFT_4075 0.63 +1.0 50,901 - EX28DRAFT_4075 0.81 +0.4 51,005 - -0.0 51,009 + +0.8 51,010 - +0.3 51,010 - +0.4 51,014 + -1.0 51,014 + +0.1 51,015 - +0.4 51,143 + +0.3 51,143 + -0.8 51,143 + -1.1 51,143 + +0.2 51,144 - -0.0 51,144 - +0.7 51,231 - +0.5 51,324 + EX28DRAFT_4076 0.18 -0.2 51,325 - EX28DRAFT_4076 0.18 -0.6 51,795 + EX28DRAFT_4076 0.63 -0.2 51,907 - EX28DRAFT_4076 0.74 +0.2 51,907 - EX28DRAFT_4076 0.74 -1.5 51,948 + EX28DRAFT_4076 0.78 -1.0 51,948 + EX28DRAFT_4076 0.78 -0.3 51,948 + EX28DRAFT_4076 0.78 +0.0 52,130 + -0.3 52,133 - +0.6 52,173 - +1.1 52,413 - EX28DRAFT_4077 0.28 +0.1 52,799 + EX28DRAFT_4077 0.86 +0.2 52,892 + +0.6 52,904 - -0.9 52,933 + +0.3 52,942 + -0.1 52,943 - +2.0 52,943 - +0.1 52,957 + +0.2 52,957 + +0.1 52,958 - -0.3 52,960 - -0.5 52,960 - +1.7 53,046 + +2.7 53,069 + -0.9 53,073 + -0.5 53,117 + -0.1 53,117 + -0.1 53,117 + -0.1 53,117 + -0.3 53,132 - +0.5 53,140 + -0.2 53,140 + -0.1 53,141 - +0.7
Or see this region's nucleotide sequence