Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4063 and EX28DRAFT_4064 overlap by 35 nucleotides EX28DRAFT_4064 and EX28DRAFT_4065 are separated by 96 nucleotides EX28DRAFT_4065 and EX28DRAFT_4066 are separated by 283 nucleotides EX28DRAFT_4066 and EX28DRAFT_4067 are separated by 43 nucleotides
EX28DRAFT_4063: EX28DRAFT_4063 - Zn-dependent oligopeptidases, at 38,445 to 40,487
_4063
EX28DRAFT_4064: EX28DRAFT_4064 - Putative SAM-dependent methyltransferase, at 40,453 to 41,247
_4064
EX28DRAFT_4065: EX28DRAFT_4065 - Universal stress protein UspA and related nucleotide-binding proteins, at 41,344 to 41,781
_4065
EX28DRAFT_4066: EX28DRAFT_4066 - Universal stress protein B (UspB), at 42,065 to 42,400
_4066
EX28DRAFT_4067: EX28DRAFT_4067 - hypothetical protein, at 42,444 to 42,851
_4067
Position (kb) 41
42 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.493 kb on - strand at 40.508 kb on + strand at 40.508 kb on + strand at 40.508 kb on + strand at 40.509 kb on - strand at 40.512 kb on - strand at 40.756 kb on + strand, within EX28DRAFT_4064 at 41.000 kb on - strand, within EX28DRAFT_4064 at 41.000 kb on - strand, within EX28DRAFT_4064 at 41.011 kb on - strand, within EX28DRAFT_4064 at 41.011 kb on - strand, within EX28DRAFT_4064 at 41.022 kb on + strand, within EX28DRAFT_4064 at 41.158 kb on + strand, within EX28DRAFT_4064 at 41.294 kb on + strand at 41.294 kb on + strand at 41.295 kb on - strand at 41.337 kb on - strand at 41.345 kb on + strand at 41.345 kb on + strand at 41.345 kb on + strand at 41.346 kb on - strand at 41.478 kb on - strand, within EX28DRAFT_4065 at 41.655 kb on - strand, within EX28DRAFT_4065 at 41.719 kb on - strand, within EX28DRAFT_4065 at 41.782 kb on - strand at 41.782 kb on - strand at 41.798 kb on + strand at 41.798 kb on + strand at 41.799 kb on - strand at 41.799 kb on - strand at 41.814 kb on - strand at 41.856 kb on + strand at 41.857 kb on - strand at 41.862 kb on + strand at 41.863 kb on - strand at 41.950 kb on - strand at 41.953 kb on - strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.064 kb on + strand at 42.065 kb on - strand at 42.065 kb on - strand at 42.112 kb on - strand, within EX28DRAFT_4066 at 42.128 kb on + strand, within EX28DRAFT_4066 at 42.130 kb on + strand, within EX28DRAFT_4066 at 42.160 kb on - strand, within EX28DRAFT_4066 at 42.191 kb on + strand, within EX28DRAFT_4066 at 42.257 kb on + strand, within EX28DRAFT_4066 at 42.258 kb on - strand, within EX28DRAFT_4066 at 42.263 kb on + strand, within EX28DRAFT_4066 at 42.264 kb on - strand, within EX28DRAFT_4066 at 42.264 kb on - strand, within EX28DRAFT_4066 at 42.267 kb on - strand, within EX28DRAFT_4066 at 42.301 kb on + strand, within EX28DRAFT_4066 at 42.302 kb on - strand, within EX28DRAFT_4066 at 42.476 kb on + strand at 42.476 kb on + strand at 42.476 kb on + strand at 42.477 kb on - strand at 42.509 kb on - strand, within EX28DRAFT_4067 at 42.534 kb on - strand, within EX28DRAFT_4067 at 42.534 kb on - strand, within EX28DRAFT_4067 at 42.605 kb on + strand, within EX28DRAFT_4067 at 42.605 kb on + strand, within EX28DRAFT_4067 at 42.606 kb on - strand, within EX28DRAFT_4067 at 42.606 kb on - strand, within EX28DRAFT_4067 at 42.606 kb on - strand, within EX28DRAFT_4067 at 42.640 kb on + strand, within EX28DRAFT_4067 at 42.640 kb on + strand, within EX28DRAFT_4067 at 42.641 kb on - strand, within EX28DRAFT_4067 at 42.641 kb on - strand, within EX28DRAFT_4067 at 42.641 kb on - strand, within EX28DRAFT_4067 at 42.650 kb on - strand, within EX28DRAFT_4067 at 42.692 kb on + strand, within EX28DRAFT_4067 at 42.692 kb on + strand, within EX28DRAFT_4067 at 42.693 kb on - strand, within EX28DRAFT_4067 at 42.694 kb on + strand, within EX28DRAFT_4067 at 42.694 kb on + strand, within EX28DRAFT_4067 at 42.732 kb on + strand, within EX28DRAFT_4067 at 42.732 kb on + strand, within EX28DRAFT_4067
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 40,493 - -0.3 40,508 + -0.8 40,508 + -0.6 40,508 + +0.7 40,509 - -2.0 40,512 - -0.6 40,756 + EX28DRAFT_4064 0.38 +0.1 41,000 - EX28DRAFT_4064 0.69 +1.3 41,000 - EX28DRAFT_4064 0.69 -1.4 41,011 - EX28DRAFT_4064 0.70 -0.2 41,011 - EX28DRAFT_4064 0.70 -0.7 41,022 + EX28DRAFT_4064 0.72 -1.8 41,158 + EX28DRAFT_4064 0.89 -1.6 41,294 + +0.3 41,294 + +0.5 41,295 - -0.5 41,337 - -0.5 41,345 + +0.1 41,345 + -0.9 41,345 + +0.7 41,346 - -1.0 41,478 - EX28DRAFT_4065 0.31 -0.7 41,655 - EX28DRAFT_4065 0.71 -0.8 41,719 - EX28DRAFT_4065 0.86 -1.3 41,782 - -1.9 41,782 - -1.3 41,798 + -0.3 41,798 + -1.9 41,799 - -0.2 41,799 - +0.0 41,814 - +1.0 41,856 + -0.1 41,857 - -0.2 41,862 + -1.0 41,863 - -0.4 41,950 - -1.9 41,953 - -0.2 42,064 + -0.1 42,064 + +0.6 42,064 + +0.2 42,064 + +0.3 42,064 + -0.2 42,065 - -1.7 42,065 - -0.6 42,112 - EX28DRAFT_4066 0.14 -0.5 42,128 + EX28DRAFT_4066 0.19 -2.7 42,130 + EX28DRAFT_4066 0.19 -0.3 42,160 - EX28DRAFT_4066 0.28 -0.4 42,191 + EX28DRAFT_4066 0.38 -0.3 42,257 + EX28DRAFT_4066 0.57 +0.1 42,258 - EX28DRAFT_4066 0.57 +2.0 42,263 + EX28DRAFT_4066 0.59 -1.5 42,264 - EX28DRAFT_4066 0.59 -1.1 42,264 - EX28DRAFT_4066 0.59 -1.7 42,267 - EX28DRAFT_4066 0.60 -0.4 42,301 + EX28DRAFT_4066 0.70 +0.2 42,302 - EX28DRAFT_4066 0.71 -0.7 42,476 + -0.3 42,476 + -0.2 42,476 + -0.2 42,477 - -0.4 42,509 - EX28DRAFT_4067 0.16 -0.5 42,534 - EX28DRAFT_4067 0.22 -0.2 42,534 - EX28DRAFT_4067 0.22 -0.5 42,605 + EX28DRAFT_4067 0.39 +0.4 42,605 + EX28DRAFT_4067 0.39 -1.5 42,606 - EX28DRAFT_4067 0.40 -0.6 42,606 - EX28DRAFT_4067 0.40 +0.3 42,606 - EX28DRAFT_4067 0.40 +0.3 42,640 + EX28DRAFT_4067 0.48 +0.5 42,640 + EX28DRAFT_4067 0.48 -0.9 42,641 - EX28DRAFT_4067 0.48 +0.4 42,641 - EX28DRAFT_4067 0.48 -1.2 42,641 - EX28DRAFT_4067 0.48 +0.0 42,650 - EX28DRAFT_4067 0.50 -0.9 42,692 + EX28DRAFT_4067 0.61 +0.6 42,692 + EX28DRAFT_4067 0.61 -0.3 42,693 - EX28DRAFT_4067 0.61 +0.0 42,694 + EX28DRAFT_4067 0.61 +0.1 42,694 + EX28DRAFT_4067 0.61 -0.4 42,732 + EX28DRAFT_4067 0.71 +0.6 42,732 + EX28DRAFT_4067 0.71 -0.3
Or see this region's nucleotide sequence