Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3979 and EX28DRAFT_3980 overlap by 4 nucleotides EX28DRAFT_3980 and EX28DRAFT_3981 overlap by 17 nucleotides EX28DRAFT_3981 and EX28DRAFT_3982 overlap by 4 nucleotides EX28DRAFT_3982 and EX28DRAFT_3983 are separated by 226 nucleotides
EX28DRAFT_3979: EX28DRAFT_3979 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 186,718 to 187,866
_3979
EX28DRAFT_3980: EX28DRAFT_3980 - 2-keto-3-deoxy-6-phosphogluconate aldolase, at 187,863 to 188,480
_3980
EX28DRAFT_3981: EX28DRAFT_3981 - 2-keto-3-deoxy-galactonokinase, at 188,464 to 189,342
_3981
EX28DRAFT_3982: EX28DRAFT_3982 - Transcriptional regulators, at 189,339 to 190,028
_3982
EX28DRAFT_3983: EX28DRAFT_3983 - HAD-superfamily hydrolase, subfamily IIB, at 190,255 to 191,067
_3983
Position (kb) 188
189
190 Strain fitness (log2 ratio) -2
-1
0
1 at 187.515 kb on + strand, within EX28DRAFT_3979 at 187.515 kb on + strand, within EX28DRAFT_3979 at 187.516 kb on - strand, within EX28DRAFT_3979 at 187.517 kb on + strand, within EX28DRAFT_3979 at 187.518 kb on - strand, within EX28DRAFT_3979 at 187.665 kb on - strand, within EX28DRAFT_3979 at 187.744 kb on + strand, within EX28DRAFT_3979 at 187.745 kb on - strand, within EX28DRAFT_3979 at 187.841 kb on + strand at 187.858 kb on + strand at 187.858 kb on + strand at 188.071 kb on + strand, within EX28DRAFT_3980 at 188.072 kb on - strand, within EX28DRAFT_3980 at 188.940 kb on - strand, within EX28DRAFT_3981 at 188.940 kb on - strand, within EX28DRAFT_3981 at 188.940 kb on - strand, within EX28DRAFT_3981 at 189.040 kb on - strand, within EX28DRAFT_3981 at 189.049 kb on - strand, within EX28DRAFT_3981 at 189.222 kb on + strand, within EX28DRAFT_3981 at 189.223 kb on - strand, within EX28DRAFT_3981 at 189.383 kb on + strand at 189.383 kb on + strand at 189.383 kb on + strand at 189.383 kb on + strand at 189.384 kb on - strand at 189.443 kb on + strand, within EX28DRAFT_3982 at 189.443 kb on + strand, within EX28DRAFT_3982 at 189.502 kb on - strand, within EX28DRAFT_3982 at 189.533 kb on + strand, within EX28DRAFT_3982 at 189.964 kb on + strand at 189.964 kb on + strand at 190.017 kb on - strand at 190.048 kb on + strand at 190.048 kb on + strand at 190.048 kb on + strand at 190.049 kb on - strand at 190.060 kb on + strand at 190.060 kb on + strand at 190.061 kb on - strand at 190.061 kb on - strand at 190.113 kb on + strand at 190.114 kb on - strand at 190.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 187,515 + EX28DRAFT_3979 0.69 +0.0 187,515 + EX28DRAFT_3979 0.69 +0.6 187,516 - EX28DRAFT_3979 0.69 +0.0 187,517 + EX28DRAFT_3979 0.70 +0.2 187,518 - EX28DRAFT_3979 0.70 -0.0 187,665 - EX28DRAFT_3979 0.82 -0.5 187,744 + EX28DRAFT_3979 0.89 -0.1 187,745 - EX28DRAFT_3979 0.89 +0.4 187,841 + -0.3 187,858 + +0.4 187,858 + +0.3 188,071 + EX28DRAFT_3980 0.34 +0.5 188,072 - EX28DRAFT_3980 0.34 -0.6 188,940 - EX28DRAFT_3981 0.54 +0.1 188,940 - EX28DRAFT_3981 0.54 +0.3 188,940 - EX28DRAFT_3981 0.54 +0.1 189,040 - EX28DRAFT_3981 0.66 +0.2 189,049 - EX28DRAFT_3981 0.67 +0.4 189,222 + EX28DRAFT_3981 0.86 +0.5 189,223 - EX28DRAFT_3981 0.86 -0.3 189,383 + +1.2 189,383 + +0.0 189,383 + -0.2 189,383 + +0.1 189,384 - -0.2 189,443 + EX28DRAFT_3982 0.15 -0.1 189,443 + EX28DRAFT_3982 0.15 +0.3 189,502 - EX28DRAFT_3982 0.24 -2.3 189,533 + EX28DRAFT_3982 0.28 -0.6 189,964 + -0.3 189,964 + +0.1 190,017 - -0.2 190,048 + -0.1 190,048 + -0.0 190,048 + -0.5 190,049 - -0.8 190,060 + +1.1 190,060 + +0.2 190,061 - -0.2 190,061 - -0.4 190,113 + +0.8 190,114 - -0.8 190,284 - +0.1
Or see this region's nucleotide sequence