Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3826 and EX28DRAFT_3827 overlap by 8 nucleotides EX28DRAFT_3827 and EX28DRAFT_3828 overlap by 1 nucleotides EX28DRAFT_3828 and EX28DRAFT_3829 are separated by 103 nucleotides
EX28DRAFT_3826: EX28DRAFT_3826 - Uncharacterized protein conserved in bacteria, at 30,271 to 31,266
_3826
EX28DRAFT_3827: EX28DRAFT_3827 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 31,259 to 32,179
_3827
EX28DRAFT_3828: EX28DRAFT_3828 - Amidases related to nicotinamidase, at 32,179 to 32,718
_3828
EX28DRAFT_3829: EX28DRAFT_3829 - D-xylulose kinase, at 32,822 to 34,276
_3829
Position (kb)
32
33 Strain fitness (log2 ratio)
-1
0
1 at 31.264 kb on + strand at 31.268 kb on - strand at 31.290 kb on + strand at 31.349 kb on + strand at 31.350 kb on - strand at 31.350 kb on - strand at 31.572 kb on - strand, within EX28DRAFT_3827 at 31.772 kb on + strand, within EX28DRAFT_3827 at 31.780 kb on + strand, within EX28DRAFT_3827 at 31.781 kb on - strand, within EX28DRAFT_3827 at 31.784 kb on - strand, within EX28DRAFT_3827 at 31.784 kb on - strand, within EX28DRAFT_3827 at 32.039 kb on + strand, within EX28DRAFT_3827 at 32.040 kb on - strand, within EX28DRAFT_3827 at 32.073 kb on + strand, within EX28DRAFT_3827 at 32.073 kb on + strand, within EX28DRAFT_3827 at 32.073 kb on + strand, within EX28DRAFT_3827 at 32.073 kb on + strand, within EX28DRAFT_3827 at 32.073 kb on + strand, within EX28DRAFT_3827 at 32.074 kb on - strand, within EX28DRAFT_3827 at 32.133 kb on - strand at 32.133 kb on - strand at 32.277 kb on + strand, within EX28DRAFT_3828 at 32.288 kb on + strand, within EX28DRAFT_3828 at 32.289 kb on - strand, within EX28DRAFT_3828 at 32.401 kb on - strand, within EX28DRAFT_3828 at 32.464 kb on - strand, within EX28DRAFT_3828 at 32.525 kb on + strand, within EX28DRAFT_3828 at 32.525 kb on + strand, within EX28DRAFT_3828 at 32.751 kb on + strand at 32.819 kb on + strand at 32.909 kb on + strand at 32.909 kb on + strand at 32.976 kb on - strand, within EX28DRAFT_3829 at 33.265 kb on + strand, within EX28DRAFT_3829 at 33.266 kb on - strand, within EX28DRAFT_3829 at 33.282 kb on + strand, within EX28DRAFT_3829 at 33.282 kb on + strand, within EX28DRAFT_3829 at 33.682 kb on + strand, within EX28DRAFT_3829 at 33.682 kb on + strand, within EX28DRAFT_3829 at 33.682 kb on + strand, within EX28DRAFT_3829 at 33.682 kb on + strand, within EX28DRAFT_3829 at 33.683 kb on - strand, within EX28DRAFT_3829 at 33.683 kb on - strand, within EX28DRAFT_3829
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 31,264 + +0.0 31,268 - +0.0 31,290 + -0.4 31,349 + -0.2 31,350 - +0.4 31,350 - +0.2 31,572 - EX28DRAFT_3827 0.34 -1.2 31,772 + EX28DRAFT_3827 0.56 +0.7 31,780 + EX28DRAFT_3827 0.57 -0.4 31,781 - EX28DRAFT_3827 0.57 +0.2 31,784 - EX28DRAFT_3827 0.57 -0.0 31,784 - EX28DRAFT_3827 0.57 -0.4 32,039 + EX28DRAFT_3827 0.85 +0.0 32,040 - EX28DRAFT_3827 0.85 +0.1 32,073 + EX28DRAFT_3827 0.88 +0.6 32,073 + EX28DRAFT_3827 0.88 -0.3 32,073 + EX28DRAFT_3827 0.88 +0.0 32,073 + EX28DRAFT_3827 0.88 -0.8 32,073 + EX28DRAFT_3827 0.88 +0.3 32,074 - EX28DRAFT_3827 0.88 -1.5 32,133 - +1.4 32,133 - +0.0 32,277 + EX28DRAFT_3828 0.18 -0.3 32,288 + EX28DRAFT_3828 0.20 +0.2 32,289 - EX28DRAFT_3828 0.20 -1.7 32,401 - EX28DRAFT_3828 0.41 +0.3 32,464 - EX28DRAFT_3828 0.53 +0.8 32,525 + EX28DRAFT_3828 0.64 +0.6 32,525 + EX28DRAFT_3828 0.64 +0.1 32,751 + -0.5 32,819 + +0.2 32,909 + +0.5 32,909 + -0.4 32,976 - EX28DRAFT_3829 0.11 -0.6 33,265 + EX28DRAFT_3829 0.30 +0.1 33,266 - EX28DRAFT_3829 0.31 -1.3 33,282 + EX28DRAFT_3829 0.32 -0.3 33,282 + EX28DRAFT_3829 0.32 +0.0 33,682 + EX28DRAFT_3829 0.59 +0.3 33,682 + EX28DRAFT_3829 0.59 -0.3 33,682 + EX28DRAFT_3829 0.59 +1.3 33,682 + EX28DRAFT_3829 0.59 -1.2 33,683 - EX28DRAFT_3829 0.59 +0.2 33,683 - EX28DRAFT_3829 0.59 +0.9
Or see this region's nucleotide sequence