Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3619 and EX28DRAFT_3620 are separated by 262 nucleotides EX28DRAFT_3620 and EX28DRAFT_3621 are separated by 110 nucleotides EX28DRAFT_3621 and EX28DRAFT_3622 are separated by 122 nucleotides
EX28DRAFT_3619: EX28DRAFT_3619 - amino acid carrier protein, at 278,483 to 279,913
_3619
EX28DRAFT_3620: EX28DRAFT_3620 - transaldolase, at 280,176 to 281,129
_3620
EX28DRAFT_3621: EX28DRAFT_3621 - molybdenum cofactor synthesis domain, at 281,240 to 281,827
_3621
EX28DRAFT_3622: EX28DRAFT_3622 - Arabinose efflux permease, at 281,950 to 283,272
_3622
Position (kb) 280
281
282 Strain fitness (log2 ratio) -1
0
1
2
3 at 279.211 kb on + strand, within EX28DRAFT_3619 at 279.445 kb on + strand, within EX28DRAFT_3619 at 279.520 kb on - strand, within EX28DRAFT_3619 at 279.520 kb on - strand, within EX28DRAFT_3619 at 279.520 kb on - strand, within EX28DRAFT_3619 at 279.520 kb on - strand, within EX28DRAFT_3619 at 279.520 kb on - strand, within EX28DRAFT_3619 at 279.520 kb on - strand, within EX28DRAFT_3619 at 279.567 kb on + strand, within EX28DRAFT_3619 at 279.568 kb on - strand, within EX28DRAFT_3619 at 279.740 kb on + strand, within EX28DRAFT_3619 at 279.797 kb on - strand at 279.799 kb on - strand at 279.838 kb on + strand at 279.839 kb on - strand at 279.944 kb on + strand at 279.944 kb on + strand at 279.949 kb on - strand at 280.012 kb on - strand at 280.081 kb on - strand at 280.081 kb on - strand at 280.081 kb on - strand at 280.097 kb on + strand at 280.144 kb on + strand at 280.172 kb on + strand at 280.172 kb on + strand at 280.173 kb on - strand at 280.173 kb on - strand at 280.220 kb on - strand at 280.255 kb on - strand at 280.387 kb on + strand, within EX28DRAFT_3620 at 280.452 kb on - strand, within EX28DRAFT_3620 at 280.559 kb on + strand, within EX28DRAFT_3620 at 280.580 kb on + strand, within EX28DRAFT_3620 at 280.581 kb on - strand, within EX28DRAFT_3620 at 280.690 kb on + strand, within EX28DRAFT_3620 at 280.691 kb on - strand, within EX28DRAFT_3620 at 280.691 kb on - strand, within EX28DRAFT_3620 at 280.691 kb on - strand, within EX28DRAFT_3620 at 280.692 kb on + strand, within EX28DRAFT_3620 at 280.731 kb on + strand, within EX28DRAFT_3620 at 280.731 kb on + strand, within EX28DRAFT_3620 at 280.732 kb on - strand, within EX28DRAFT_3620 at 280.793 kb on + strand, within EX28DRAFT_3620 at 280.803 kb on + strand, within EX28DRAFT_3620 at 280.812 kb on + strand, within EX28DRAFT_3620 at 280.812 kb on + strand, within EX28DRAFT_3620 at 280.813 kb on - strand, within EX28DRAFT_3620 at 280.959 kb on - strand, within EX28DRAFT_3620 at 280.969 kb on - strand, within EX28DRAFT_3620 at 281.050 kb on + strand at 281.128 kb on - strand at 281.165 kb on + strand at 281.200 kb on + strand at 281.240 kb on - strand at 281.245 kb on + strand at 281.245 kb on + strand at 281.245 kb on + strand at 281.250 kb on + strand at 281.250 kb on + strand at 281.262 kb on + strand at 281.262 kb on + strand at 281.556 kb on + strand, within EX28DRAFT_3621 at 281.556 kb on + strand, within EX28DRAFT_3621 at 281.556 kb on + strand, within EX28DRAFT_3621 at 281.563 kb on - strand, within EX28DRAFT_3621 at 281.724 kb on + strand, within EX28DRAFT_3621 at 281.735 kb on - strand, within EX28DRAFT_3621 at 281.756 kb on + strand, within EX28DRAFT_3621 at 281.756 kb on + strand, within EX28DRAFT_3621 at 281.757 kb on - strand, within EX28DRAFT_3621 at 281.818 kb on - strand at 281.838 kb on + strand at 281.838 kb on + strand at 281.838 kb on + strand at 281.839 kb on - strand at 281.849 kb on - strand at 281.881 kb on - strand at 281.950 kb on - strand at 281.958 kb on + strand at 281.958 kb on + strand at 281.959 kb on - strand at 281.959 kb on - strand at 281.986 kb on + strand at 282.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 279,211 + EX28DRAFT_3619 0.51 -0.7 279,445 + EX28DRAFT_3619 0.67 -0.4 279,520 - EX28DRAFT_3619 0.72 +0.1 279,520 - EX28DRAFT_3619 0.72 +1.6 279,520 - EX28DRAFT_3619 0.72 -0.8 279,520 - EX28DRAFT_3619 0.72 +0.2 279,520 - EX28DRAFT_3619 0.72 -0.6 279,520 - EX28DRAFT_3619 0.72 -0.5 279,567 + EX28DRAFT_3619 0.76 -0.3 279,568 - EX28DRAFT_3619 0.76 +0.1 279,740 + EX28DRAFT_3619 0.88 -0.6 279,797 - -0.1 279,799 - +0.2 279,838 + -0.8 279,839 - -0.3 279,944 + +0.0 279,944 + +0.3 279,949 - +0.2 280,012 - -0.3 280,081 - +0.6 280,081 - +0.4 280,081 - -0.2 280,097 + +0.6 280,144 + -0.1 280,172 + +1.3 280,172 + +0.2 280,173 - -0.2 280,173 - +1.0 280,220 - +0.5 280,255 - +0.9 280,387 + EX28DRAFT_3620 0.22 +0.4 280,452 - EX28DRAFT_3620 0.29 -0.9 280,559 + EX28DRAFT_3620 0.40 +0.0 280,580 + EX28DRAFT_3620 0.42 +1.0 280,581 - EX28DRAFT_3620 0.42 +0.5 280,690 + EX28DRAFT_3620 0.54 +0.7 280,691 - EX28DRAFT_3620 0.54 -0.2 280,691 - EX28DRAFT_3620 0.54 +0.8 280,691 - EX28DRAFT_3620 0.54 +1.3 280,692 + EX28DRAFT_3620 0.54 -0.1 280,731 + EX28DRAFT_3620 0.58 -0.3 280,731 + EX28DRAFT_3620 0.58 -0.5 280,732 - EX28DRAFT_3620 0.58 +0.2 280,793 + EX28DRAFT_3620 0.65 +0.5 280,803 + EX28DRAFT_3620 0.66 +1.3 280,812 + EX28DRAFT_3620 0.67 +0.2 280,812 + EX28DRAFT_3620 0.67 +3.0 280,813 - EX28DRAFT_3620 0.67 +0.8 280,959 - EX28DRAFT_3620 0.82 +0.2 280,969 - EX28DRAFT_3620 0.83 -0.3 281,050 + +0.2 281,128 - -0.5 281,165 + +1.7 281,200 + +0.7 281,240 - +1.7 281,245 + -0.2 281,245 + -1.0 281,245 + -0.7 281,250 + +0.5 281,250 + +0.2 281,262 + -0.3 281,262 + -0.0 281,556 + EX28DRAFT_3621 0.54 +0.7 281,556 + EX28DRAFT_3621 0.54 -0.1 281,556 + EX28DRAFT_3621 0.54 -0.1 281,563 - EX28DRAFT_3621 0.55 +0.7 281,724 + EX28DRAFT_3621 0.82 +0.4 281,735 - EX28DRAFT_3621 0.84 -0.5 281,756 + EX28DRAFT_3621 0.88 -0.9 281,756 + EX28DRAFT_3621 0.88 -0.7 281,757 - EX28DRAFT_3621 0.88 -0.6 281,818 - +0.1 281,838 + -0.2 281,838 + +0.6 281,838 + +0.0 281,839 - -0.5 281,849 - -0.6 281,881 - -0.2 281,950 - +0.5 281,958 + +1.9 281,958 + +0.2 281,959 - +0.5 281,959 - +0.5 281,986 + +0.2 282,069 - +0.5
Or see this region's nucleotide sequence