Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3587 and EX28DRAFT_3588 overlap by 6 nucleotides EX28DRAFT_3588 and EX28DRAFT_3589 overlap by 26 nucleotides EX28DRAFT_3589 and EX28DRAFT_3590 are separated by 262 nucleotides
EX28DRAFT_3587: EX28DRAFT_3587 - Mg-dependent DNase, at 243,880 to 244,662
_3587
EX28DRAFT_3588: EX28DRAFT_3588 - glycine radical enzyme activase, YjjW family, at 244,657 to 245,517
_3588
EX28DRAFT_3589: EX28DRAFT_3589 - glycine radical enzyme, YjjI family, at 245,492 to 247,039
_3589
EX28DRAFT_3590: EX28DRAFT_3590 - deoxyribose-phosphate aldolase, at 247,302 to 248,081
_3590
Position (kb) 245
246
247
248 Strain fitness (log2 ratio) -1
0
1
2 at 244.660 kb on + strand at 244.660 kb on + strand at 244.664 kb on + strand at 244.664 kb on + strand at 244.665 kb on - strand at 244.665 kb on - strand at 244.687 kb on + strand at 244.687 kb on + strand at 244.876 kb on - strand, within EX28DRAFT_3588 at 244.935 kb on + strand, within EX28DRAFT_3588 at 244.936 kb on - strand, within EX28DRAFT_3588 at 245.120 kb on - strand, within EX28DRAFT_3588 at 245.241 kb on + strand, within EX28DRAFT_3588 at 245.584 kb on + strand at 245.587 kb on + strand at 245.642 kb on - strand at 245.643 kb on + strand at 245.644 kb on - strand at 245.776 kb on + strand, within EX28DRAFT_3589 at 245.797 kb on - strand, within EX28DRAFT_3589 at 245.797 kb on - strand, within EX28DRAFT_3589 at 245.797 kb on - strand, within EX28DRAFT_3589 at 245.797 kb on - strand, within EX28DRAFT_3589 at 246.059 kb on - strand, within EX28DRAFT_3589 at 246.081 kb on + strand, within EX28DRAFT_3589 at 246.081 kb on + strand, within EX28DRAFT_3589 at 246.082 kb on - strand, within EX28DRAFT_3589 at 246.142 kb on + strand, within EX28DRAFT_3589 at 246.143 kb on - strand, within EX28DRAFT_3589 at 246.143 kb on - strand, within EX28DRAFT_3589 at 246.417 kb on - strand, within EX28DRAFT_3589 at 246.468 kb on + strand, within EX28DRAFT_3589 at 246.662 kb on + strand, within EX28DRAFT_3589 at 246.665 kb on + strand, within EX28DRAFT_3589 at 246.666 kb on - strand, within EX28DRAFT_3589 at 246.687 kb on + strand, within EX28DRAFT_3589 at 246.688 kb on - strand, within EX28DRAFT_3589 at 246.828 kb on + strand, within EX28DRAFT_3589 at 246.872 kb on - strand, within EX28DRAFT_3589 at 246.975 kb on - strand at 247.039 kb on + strand at 247.039 kb on + strand at 247.040 kb on - strand at 247.080 kb on + strand at 247.131 kb on + strand at 247.249 kb on + strand at 247.275 kb on + strand at 247.301 kb on + strand at 247.313 kb on - strand at 247.373 kb on + strand at 247.374 kb on - strand at 247.443 kb on - strand, within EX28DRAFT_3590 at 247.443 kb on - strand, within EX28DRAFT_3590 at 247.519 kb on + strand, within EX28DRAFT_3590 at 247.523 kb on + strand, within EX28DRAFT_3590 at 247.523 kb on + strand, within EX28DRAFT_3590 at 247.524 kb on - strand, within EX28DRAFT_3590 at 247.677 kb on - strand, within EX28DRAFT_3590 at 247.758 kb on - strand, within EX28DRAFT_3590 at 247.999 kb on - strand, within EX28DRAFT_3590
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 244,660 + -0.1 244,660 + -0.2 244,664 + -0.1 244,664 + +0.5 244,665 - -0.1 244,665 - +0.7 244,687 + +0.4 244,687 + -0.3 244,876 - EX28DRAFT_3588 0.25 -0.7 244,935 + EX28DRAFT_3588 0.32 -1.1 244,936 - EX28DRAFT_3588 0.32 -0.2 245,120 - EX28DRAFT_3588 0.54 -0.1 245,241 + EX28DRAFT_3588 0.68 +0.0 245,584 + -0.4 245,587 + -0.4 245,642 - -0.6 245,643 + -0.0 245,644 - +0.2 245,776 + EX28DRAFT_3589 0.18 -0.8 245,797 - EX28DRAFT_3589 0.20 +0.1 245,797 - EX28DRAFT_3589 0.20 -0.2 245,797 - EX28DRAFT_3589 0.20 +0.2 245,797 - EX28DRAFT_3589 0.20 -0.8 246,059 - EX28DRAFT_3589 0.37 +0.7 246,081 + EX28DRAFT_3589 0.38 -1.1 246,081 + EX28DRAFT_3589 0.38 -0.1 246,082 - EX28DRAFT_3589 0.38 -0.2 246,142 + EX28DRAFT_3589 0.42 +2.0 246,143 - EX28DRAFT_3589 0.42 -0.9 246,143 - EX28DRAFT_3589 0.42 +2.0 246,417 - EX28DRAFT_3589 0.60 +0.3 246,468 + EX28DRAFT_3589 0.63 -0.2 246,662 + EX28DRAFT_3589 0.76 -0.4 246,665 + EX28DRAFT_3589 0.76 +0.3 246,666 - EX28DRAFT_3589 0.76 -0.0 246,687 + EX28DRAFT_3589 0.77 -0.2 246,688 - EX28DRAFT_3589 0.77 +0.2 246,828 + EX28DRAFT_3589 0.86 -0.9 246,872 - EX28DRAFT_3589 0.89 +0.5 246,975 - +0.3 247,039 + +0.3 247,039 + -0.7 247,040 - -1.5 247,080 + -0.1 247,131 + +0.2 247,249 + +0.6 247,275 + -1.0 247,301 + -1.1 247,313 - -0.2 247,373 + +0.3 247,374 - -0.1 247,443 - EX28DRAFT_3590 0.18 +0.3 247,443 - EX28DRAFT_3590 0.18 -0.4 247,519 + EX28DRAFT_3590 0.28 +0.9 247,523 + EX28DRAFT_3590 0.28 +0.5 247,523 + EX28DRAFT_3590 0.28 -0.1 247,524 - EX28DRAFT_3590 0.28 -0.6 247,677 - EX28DRAFT_3590 0.48 +0.1 247,758 - EX28DRAFT_3590 0.58 -1.2 247,999 - EX28DRAFT_3590 0.89 +0.4
Or see this region's nucleotide sequence