Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3586

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3584 and EX28DRAFT_3585 are separated by 109 nucleotidesEX28DRAFT_3585 and EX28DRAFT_3586 are separated by 122 nucleotidesEX28DRAFT_3586 and EX28DRAFT_3587 overlap by 4 nucleotidesEX28DRAFT_3587 and EX28DRAFT_3588 overlap by 6 nucleotides EX28DRAFT_3584: EX28DRAFT_3584 - Predicted periplasmic or secreted lipoprotein, at 241,802 to 242,419 _3584 EX28DRAFT_3585: EX28DRAFT_3585 - Small integral membrane protein, at 242,529 to 242,708 _3585 EX28DRAFT_3586: EX28DRAFT_3586 - Predicted esterase of the alpha-beta hydrolase superfamily, at 242,831 to 243,883 _3586 EX28DRAFT_3587: EX28DRAFT_3587 - Mg-dependent DNase, at 243,880 to 244,662 _3587 EX28DRAFT_3588: EX28DRAFT_3588 - glycine radical enzyme activase, YjjW family, at 244,657 to 245,517 _3588 Position (kb) 242 243 244Strain fitness (log2 ratio) -1 0 1at 241.951 kb on + strand, within EX28DRAFT_3584at 241.957 kb on + strand, within EX28DRAFT_3584at 241.957 kb on + strand, within EX28DRAFT_3584at 241.958 kb on - strand, within EX28DRAFT_3584at 241.958 kb on - strand, within EX28DRAFT_3584at 241.958 kb on - strand, within EX28DRAFT_3584at 242.175 kb on + strand, within EX28DRAFT_3584at 242.175 kb on + strand, within EX28DRAFT_3584at 242.176 kb on - strand, within EX28DRAFT_3584at 242.176 kb on - strand, within EX28DRAFT_3584at 242.207 kb on + strand, within EX28DRAFT_3584at 242.227 kb on + strand, within EX28DRAFT_3584at 242.227 kb on + strand, within EX28DRAFT_3584at 242.289 kb on + strand, within EX28DRAFT_3584at 242.289 kb on + strand, within EX28DRAFT_3584at 242.289 kb on + strand, within EX28DRAFT_3584at 242.289 kb on + strand, within EX28DRAFT_3584at 242.418 kb on - strandat 242.462 kb on + strandat 242.463 kb on - strandat 242.463 kb on - strandat 242.524 kb on + strandat 242.525 kb on - strandat 242.525 kb on - strandat 242.528 kb on + strandat 242.528 kb on + strandat 242.528 kb on + strandat 242.528 kb on + strandat 242.529 kb on - strandat 242.529 kb on - strandat 242.529 kb on - strandat 242.534 kb on - strandat 242.546 kb on + strandat 242.547 kb on - strand, within EX28DRAFT_3585at 242.547 kb on - strand, within EX28DRAFT_3585at 242.564 kb on + strand, within EX28DRAFT_3585at 242.564 kb on + strand, within EX28DRAFT_3585at 242.564 kb on + strand, within EX28DRAFT_3585at 242.564 kb on + strand, within EX28DRAFT_3585at 242.566 kb on + strand, within EX28DRAFT_3585at 242.567 kb on - strand, within EX28DRAFT_3585at 242.567 kb on - strand, within EX28DRAFT_3585at 242.567 kb on - strand, within EX28DRAFT_3585at 242.621 kb on + strand, within EX28DRAFT_3585at 242.622 kb on - strand, within EX28DRAFT_3585at 242.663 kb on + strand, within EX28DRAFT_3585at 242.663 kb on + strand, within EX28DRAFT_3585at 242.697 kb on - strandat 242.718 kb on + strandat 242.718 kb on + strandat 242.803 kb on - strandat 242.999 kb on + strand, within EX28DRAFT_3586at 243.038 kb on + strand, within EX28DRAFT_3586at 243.039 kb on - strand, within EX28DRAFT_3586at 243.046 kb on + strand, within EX28DRAFT_3586at 243.047 kb on - strand, within EX28DRAFT_3586at 243.047 kb on - strand, within EX28DRAFT_3586at 243.260 kb on + strand, within EX28DRAFT_3586at 243.338 kb on + strand, within EX28DRAFT_3586at 243.338 kb on + strand, within EX28DRAFT_3586at 243.367 kb on + strand, within EX28DRAFT_3586at 243.368 kb on - strand, within EX28DRAFT_3586at 243.368 kb on - strand, within EX28DRAFT_3586at 243.371 kb on + strand, within EX28DRAFT_3586at 243.471 kb on - strand, within EX28DRAFT_3586at 243.471 kb on - strand, within EX28DRAFT_3586at 243.471 kb on - strand, within EX28DRAFT_3586at 243.473 kb on + strand, within EX28DRAFT_3586at 243.473 kb on + strand, within EX28DRAFT_3586at 243.474 kb on - strand, within EX28DRAFT_3586at 243.614 kb on - strand, within EX28DRAFT_3586at 243.627 kb on - strand, within EX28DRAFT_3586at 243.717 kb on - strand, within EX28DRAFT_3586at 243.782 kb on - strandat 243.782 kb on - strandat 243.782 kb on - strandat 243.785 kb on - strandat 243.859 kb on - strandat 244.660 kb on + strandat 244.660 kb on + strandat 244.664 kb on + strandat 244.664 kb on + strandat 244.665 kb on - strandat 244.665 kb on - strandat 244.687 kb on + strandat 244.687 kb on + strandat 244.876 kb on - strand, within EX28DRAFT_3588

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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241,951 + EX28DRAFT_3584 0.24 -0.5
241,957 + EX28DRAFT_3584 0.25 -0.0
241,957 + EX28DRAFT_3584 0.25 -0.3
241,958 - EX28DRAFT_3584 0.25 +0.9
241,958 - EX28DRAFT_3584 0.25 +0.3
241,958 - EX28DRAFT_3584 0.25 +0.1
242,175 + EX28DRAFT_3584 0.60 +1.7
242,175 + EX28DRAFT_3584 0.60 -0.0
242,176 - EX28DRAFT_3584 0.61 -1.3
242,176 - EX28DRAFT_3584 0.61 -1.4
242,207 + EX28DRAFT_3584 0.66 -0.4
242,227 + EX28DRAFT_3584 0.69 +0.3
242,227 + EX28DRAFT_3584 0.69 +0.5
242,289 + EX28DRAFT_3584 0.79 +1.1
242,289 + EX28DRAFT_3584 0.79 +1.0
242,289 + EX28DRAFT_3584 0.79 -0.3
242,289 + EX28DRAFT_3584 0.79 +0.3
242,418 - -0.4
242,462 + +0.4
242,463 - +1.6
242,463 - +0.8
242,524 + +1.0
242,525 - +0.5
242,525 - +0.4
242,528 + +0.7
242,528 + -1.3
242,528 + -1.4
242,528 + +0.3
242,529 - +0.1
242,529 - +1.1
242,529 - -0.6
242,534 - -0.1
242,546 + -0.0
242,547 - EX28DRAFT_3585 0.10 -1.6
242,547 - EX28DRAFT_3585 0.10 -0.0
242,564 + EX28DRAFT_3585 0.19 -0.2
242,564 + EX28DRAFT_3585 0.19 -0.3
242,564 + EX28DRAFT_3585 0.19 +0.3
242,564 + EX28DRAFT_3585 0.19 +0.2
242,566 + EX28DRAFT_3585 0.21 -0.2
242,567 - EX28DRAFT_3585 0.21 -0.7
242,567 - EX28DRAFT_3585 0.21 -1.1
242,567 - EX28DRAFT_3585 0.21 +0.7
242,621 + EX28DRAFT_3585 0.51 -1.2
242,622 - EX28DRAFT_3585 0.52 -0.2
242,663 + EX28DRAFT_3585 0.74 +0.1
242,663 + EX28DRAFT_3585 0.74 -0.2
242,697 - -0.0
242,718 + -0.2
242,718 + -0.2
242,803 - +1.6
242,999 + EX28DRAFT_3586 0.16 +1.6
243,038 + EX28DRAFT_3586 0.20 +0.3
243,039 - EX28DRAFT_3586 0.20 -0.1
243,046 + EX28DRAFT_3586 0.20 +0.0
243,047 - EX28DRAFT_3586 0.21 +0.2
243,047 - EX28DRAFT_3586 0.21 +0.8
243,260 + EX28DRAFT_3586 0.41 -0.2
243,338 + EX28DRAFT_3586 0.48 +0.4
243,338 + EX28DRAFT_3586 0.48 +0.2
243,367 + EX28DRAFT_3586 0.51 +0.8
243,368 - EX28DRAFT_3586 0.51 +0.0
243,368 - EX28DRAFT_3586 0.51 -0.1
243,371 + EX28DRAFT_3586 0.51 -0.1
243,471 - EX28DRAFT_3586 0.61 +0.0
243,471 - EX28DRAFT_3586 0.61 +0.5
243,471 - EX28DRAFT_3586 0.61 +0.1
243,473 + EX28DRAFT_3586 0.61 +0.1
243,473 + EX28DRAFT_3586 0.61 -0.6
243,474 - EX28DRAFT_3586 0.61 +0.4
243,614 - EX28DRAFT_3586 0.74 +0.8
243,627 - EX28DRAFT_3586 0.76 +0.1
243,717 - EX28DRAFT_3586 0.84 +0.6
243,782 - -0.2
243,782 - -0.4
243,782 - -0.6
243,785 - +1.3
243,859 - +0.7
244,660 + -0.1
244,660 + -0.2
244,664 + -0.1
244,664 + +0.5
244,665 - -0.1
244,665 - +0.7
244,687 + +0.4
244,687 + -0.3
244,876 - EX28DRAFT_3588 0.25 -0.7

Or see this region's nucleotide sequence