Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3563 and EX28DRAFT_3564 are separated by 83 nucleotides EX28DRAFT_3564 and EX28DRAFT_3565 are separated by 41 nucleotides EX28DRAFT_3565 and EX28DRAFT_3566 are separated by 67 nucleotides EX28DRAFT_3566 and EX28DRAFT_3567 overlap by 10 nucleotides
EX28DRAFT_3563: EX28DRAFT_3563 - peroxiredoxin, Ohr subfamily, at 227,078 to 227,506
_3563
EX28DRAFT_3564: EX28DRAFT_3564 - Transcriptional regulators, at 227,590 to 228,042
_3564
EX28DRAFT_3565: EX28DRAFT_3565 - transcriptional regulator, TetR family, at 228,084 to 228,725
_3565
EX28DRAFT_3566: EX28DRAFT_3566 - Uncharacterized conserved protein, at 228,793 to 229,266
_3566
EX28DRAFT_3567: EX28DRAFT_3567 - Uncharacterized conserved protein, at 229,257 to 230,033
_3567
Position (kb) 228
229 Strain fitness (log2 ratio) -1
0
1
2 at 227.167 kb on + strand, within EX28DRAFT_3563 at 227.285 kb on - strand, within EX28DRAFT_3563 at 227.414 kb on + strand, within EX28DRAFT_3563 at 227.415 kb on - strand, within EX28DRAFT_3563 at 227.485 kb on - strand at 227.485 kb on - strand at 227.560 kb on - strand at 227.568 kb on + strand at 227.578 kb on + strand at 227.602 kb on + strand at 227.904 kb on - strand, within EX28DRAFT_3564 at 227.976 kb on - strand, within EX28DRAFT_3564 at 228.187 kb on + strand, within EX28DRAFT_3565 at 228.203 kb on - strand, within EX28DRAFT_3565 at 228.203 kb on - strand, within EX28DRAFT_3565 at 228.222 kb on + strand, within EX28DRAFT_3565 at 228.222 kb on + strand, within EX28DRAFT_3565 at 228.222 kb on + strand, within EX28DRAFT_3565 at 228.353 kb on + strand, within EX28DRAFT_3565 at 228.397 kb on + strand, within EX28DRAFT_3565 at 228.398 kb on - strand, within EX28DRAFT_3565 at 228.398 kb on - strand, within EX28DRAFT_3565 at 228.549 kb on - strand, within EX28DRAFT_3565 at 228.554 kb on + strand, within EX28DRAFT_3565 at 228.631 kb on + strand, within EX28DRAFT_3565 at 228.783 kb on - strand at 228.783 kb on - strand at 228.791 kb on + strand at 228.792 kb on - strand at 228.792 kb on - strand at 229.074 kb on + strand, within EX28DRAFT_3566 at 229.095 kb on + strand, within EX28DRAFT_3566 at 229.296 kb on + strand at 229.299 kb on + strand at 229.299 kb on + strand at 229.373 kb on + strand, within EX28DRAFT_3567 at 229.374 kb on - strand, within EX28DRAFT_3567 at 229.527 kb on - strand, within EX28DRAFT_3567 at 229.570 kb on + strand, within EX28DRAFT_3567 at 229.570 kb on + strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.571 kb on - strand, within EX28DRAFT_3567 at 229.626 kb on - strand, within EX28DRAFT_3567 at 229.634 kb on + strand, within EX28DRAFT_3567 at 229.660 kb on - strand, within EX28DRAFT_3567 at 229.660 kb on - strand, within EX28DRAFT_3567 at 229.692 kb on + strand, within EX28DRAFT_3567 at 229.693 kb on - strand, within EX28DRAFT_3567
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 227,167 + EX28DRAFT_3563 0.21 -0.4 227,285 - EX28DRAFT_3563 0.48 +0.2 227,414 + EX28DRAFT_3563 0.78 +0.3 227,415 - EX28DRAFT_3563 0.79 +0.4 227,485 - -0.2 227,485 - -0.3 227,560 - +0.3 227,568 + -0.1 227,578 + -1.7 227,602 + -0.2 227,904 - EX28DRAFT_3564 0.69 +0.1 227,976 - EX28DRAFT_3564 0.85 -0.2 228,187 + EX28DRAFT_3565 0.16 -0.4 228,203 - EX28DRAFT_3565 0.19 +0.3 228,203 - EX28DRAFT_3565 0.19 -0.2 228,222 + EX28DRAFT_3565 0.21 +0.2 228,222 + EX28DRAFT_3565 0.21 +0.6 228,222 + EX28DRAFT_3565 0.21 +0.3 228,353 + EX28DRAFT_3565 0.42 +1.0 228,397 + EX28DRAFT_3565 0.49 +0.2 228,398 - EX28DRAFT_3565 0.49 -1.6 228,398 - EX28DRAFT_3565 0.49 +0.7 228,549 - EX28DRAFT_3565 0.72 -0.3 228,554 + EX28DRAFT_3565 0.73 +0.1 228,631 + EX28DRAFT_3565 0.85 +0.5 228,783 - +2.0 228,783 - +0.1 228,791 + -0.3 228,792 - +0.4 228,792 - -1.2 229,074 + EX28DRAFT_3566 0.59 +0.5 229,095 + EX28DRAFT_3566 0.64 -0.2 229,296 + -0.2 229,299 + -0.3 229,299 + -0.1 229,373 + EX28DRAFT_3567 0.15 -0.1 229,374 - EX28DRAFT_3567 0.15 +0.0 229,527 - EX28DRAFT_3567 0.35 -0.1 229,570 + EX28DRAFT_3567 0.40 +0.1 229,570 + EX28DRAFT_3567 0.40 +0.1 229,571 - EX28DRAFT_3567 0.40 +0.3 229,571 - EX28DRAFT_3567 0.40 -0.2 229,571 - EX28DRAFT_3567 0.40 -0.1 229,571 - EX28DRAFT_3567 0.40 +0.1 229,571 - EX28DRAFT_3567 0.40 -0.1 229,571 - EX28DRAFT_3567 0.40 -0.2 229,626 - EX28DRAFT_3567 0.47 -0.1 229,634 + EX28DRAFT_3567 0.49 -0.3 229,660 - EX28DRAFT_3567 0.52 -0.6 229,660 - EX28DRAFT_3567 0.52 +0.2 229,692 + EX28DRAFT_3567 0.56 +0.4 229,693 - EX28DRAFT_3567 0.56 +0.1
Or see this region's nucleotide sequence