Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3540 and EX28DRAFT_3541 overlap by 29 nucleotides EX28DRAFT_3541 and EX28DRAFT_3542 are separated by 21 nucleotides EX28DRAFT_3542 and EX28DRAFT_3543 are separated by 9 nucleotides
EX28DRAFT_3540: EX28DRAFT_3540 - 4-hydroxyphenylacetate catabolism regulatory protein HpaA, at 204,334 to 205,266
_3540
EX28DRAFT_3541: EX28DRAFT_3541 - 4-hydroxyphenylacetate permease, at 205,238 to 206,590
_3541
EX28DRAFT_3542: EX28DRAFT_3542 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, at 206,612 to 207,409
_3542
EX28DRAFT_3543: EX28DRAFT_3543 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 207,419 to 208,222
_3543
Position (kb) 205
206
207 Strain fitness (log2 ratio) -1
0
1
2
3 at 204.793 kb on - strand, within EX28DRAFT_3540 at 204.933 kb on - strand, within EX28DRAFT_3540 at 205.237 kb on - strand at 205.363 kb on + strand at 205.363 kb on + strand at 205.364 kb on - strand at 205.503 kb on - strand, within EX28DRAFT_3541 at 205.809 kb on + strand, within EX28DRAFT_3541 at 206.129 kb on - strand, within EX28DRAFT_3541 at 206.373 kb on + strand, within EX28DRAFT_3541 at 206.373 kb on + strand, within EX28DRAFT_3541 at 206.374 kb on - strand, within EX28DRAFT_3541 at 206.382 kb on + strand, within EX28DRAFT_3541 at 206.383 kb on - strand, within EX28DRAFT_3541 at 206.419 kb on + strand, within EX28DRAFT_3541 at 206.420 kb on - strand, within EX28DRAFT_3541 at 206.420 kb on - strand, within EX28DRAFT_3541 at 206.560 kb on + strand at 206.607 kb on + strand at 206.626 kb on + strand at 206.626 kb on + strand at 207.010 kb on - strand, within EX28DRAFT_3542 at 207.010 kb on - strand, within EX28DRAFT_3542 at 207.222 kb on + strand, within EX28DRAFT_3542 at 207.240 kb on - strand, within EX28DRAFT_3542 at 207.333 kb on + strand at 207.333 kb on + strand at 207.334 kb on - strand at 207.334 kb on - strand at 207.334 kb on - strand at 207.543 kb on - strand, within EX28DRAFT_3543
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 204,793 - EX28DRAFT_3540 0.49 -1.5 204,933 - EX28DRAFT_3540 0.64 -0.1 205,237 - -0.9 205,363 + -0.1 205,363 + -0.2 205,364 - -0.3 205,503 - EX28DRAFT_3541 0.20 +3.0 205,809 + EX28DRAFT_3541 0.42 -0.4 206,129 - EX28DRAFT_3541 0.66 +0.2 206,373 + EX28DRAFT_3541 0.84 +0.4 206,373 + EX28DRAFT_3541 0.84 +0.2 206,374 - EX28DRAFT_3541 0.84 -0.4 206,382 + EX28DRAFT_3541 0.85 +1.0 206,383 - EX28DRAFT_3541 0.85 +0.0 206,419 + EX28DRAFT_3541 0.87 -0.2 206,420 - EX28DRAFT_3541 0.87 +0.6 206,420 - EX28DRAFT_3541 0.87 +0.3 206,560 + -0.0 206,607 + -0.0 206,626 + -0.0 206,626 + +0.1 207,010 - EX28DRAFT_3542 0.50 +0.2 207,010 - EX28DRAFT_3542 0.50 -0.3 207,222 + EX28DRAFT_3542 0.76 -0.3 207,240 - EX28DRAFT_3542 0.79 -0.2 207,333 + -0.7 207,333 + +0.0 207,334 - +0.2 207,334 - +0.5 207,334 - +0.2 207,543 - EX28DRAFT_3543 0.15 -0.6
Or see this region's nucleotide sequence